TCONS_00012926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012926
Unique NameTCONS_00012926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012926 ID=TCONS_00012926|Name=TCONS_00012926|organism=Clytia hemisphaerica|type=transcript|length=1097bp
attcattttctgaaaatagaTTTATTAACAGTTAAAAATTCACTTCTTTT
TAAGAAAGTTTCATTATTAAATGGACTGTGGAAAAGTTAGGGTCAGTGTT
TTGTTCTTTGCAAAAGTACGAGAGATTACAAGCAAAAGTTCCATTGACAT
AGAGTTTACATCACAAGTAAAATCAGCAGACATCATCAATCAGATTCTGG
AATTATACCCAACGTTGAAGCAGATACAANAGCAGACATCATCAAACAGA
TTCTGGAATTATACCCAACGTTGAAGCAGatacaaaataatttaataatt
gCATTGAACCAAAATTACATTGATAATTTAGATGAAACTTTGAGTCTCAA
AGAGGGTGACGAGATAGCACTTATCCCTCCTATCAGTGGTGGATAAAATA
CGAAGCAAATGAAGCATTCAACAGACACAGAATTGATCATTATAACAAAA
GAGAAACTTGATATTAACGTGGCTCTTGATTTTATAGTTCTACCGTGTAC
TGGTGGCACATCTTGTTTTGTTGGCACCACAAGAAACTCTTTCAAAGGAA
ATGTTGTGAAAACACTATTTTACGAAGCCTATGAACCAATGGCAATCAAA
GAACTTGTTAATGTTTGCCAACAGATTCGAAACAACTATGATGTGGGTAA
TATTTGCATTATGCATCGGTTAGGTGAGGTTCAGGTCAAGGAATCAAGTG
TAATAGTGGCTGTTTCTTCAACCCATAGGAAAGAAGCTATCCAAGCAACT
GAATGGGGGATTAACGAGCTAAAAGCAAGAGTCCCTATTTGGAAGAAAGA
AATATATGAAGATGAATCAAGTTCTTGGAAAGAGAACAAAGAAGCTTTCT
GGATACAGAAAGATGGATAAGGATTATCAAGACAACTGAAAAAAGATACA
ATTTAGATCTAGAAATTACGTCTGAAATTGTCATTGTATAAACTTATGTA
TGAATTCCTTTCTCCTTTACCTAGACAACAATGTATAAAGCTTATCATCA
AAGcttagattttttatttacaaaacattttatttaagtattcctagtta
accctattcatactatgGGGGGGGGGAGCTTTTTCTGTTTGGAGGTG
Run BLAST on NCBI

protein sequence of TCONS_00012926-protein

>TCONS_00012926-protein ID=TCONS_00012926-protein|Name=TCONS_00012926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MKHSTDTELIIITKEKLDINVALDFIVLPCTGGTSCFVGTTRNSFKGNVV
KTLFYEAYEPMAIKELVNVCQQIRNNYDVGNICIMHRLGEVQVKESSVIV
AVSSTHRKEAIQATEWGINELKARVPIWKKEIYEDESSSWKENKEAFWIQ
KDG
Run BLAST on NCBI

transcript from alignment at sc0000157:253014..254110

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012926 ID=TCONS_00012926|Name=TCONS_00012926|organism=Clytia hemisphaerica|type=transcript|length=1097bp|location=Sequence derived from alignment at sc0000157:253014..254110 (Clytia hemisphaerica)
CACCTCCAAACAGAAAAAGCTCCCCCCCCCcatagtatgaatagggttaa
ctaggaatacttaaataaaatgttttgtaaataaaaaatctaagCTTTGA
TGATAAGCTTTATACATTGTTGTCTAGGTAAAGGAGAAAGGAATTCATAC
ATAAGTTTATACAATGACAATTTCAGACGTAATTTCTAGATCTAAATTGT
ATCTTTTTTCAGTTGTCTTGATAATCCTTATCCATCTTTCTGTATCCAGA
AAGCTTCTTTGTTCTCTTTCCAAGAACTTGATTCATCTTCATATATTTCT
TTCTTCCAAATAGGGACTCTTGCTTTTAGCTCGTTAATCCCCCATTCAGT
TGCTTGGATAGCTTCTTTCCTATGGGTTGAAGAAACAGCCACTATTACAC
TTGATTCCTTGACCTGAACCTCACCTAACCGATGCATAATGCAAATATTA
CCCACATCATAGTTGTTTCGAATCTGTTGGCAAACATTAACAAGTTCTTT
GATTGCCATTGGTTCATAGGCTTCGTAAAATAGTGTTTTCACAACATTTC
CTTTGAAAGAGTTTCTTGTGGTGCCAACAAAACAAGATGTGCCACCAGTA
CACGGTAGAACTATAAAATCAAGAGCCACGTTAATATCAAGTTTCTCTTT
TGTTATAATGATCAATTCTGTGTCTGTTGAATGCTTCATTTGCTTCGTAT
TTTATCCACCACTGATAGGAGGGATAAGTGCTATCTCGTCACCCTCTTTG
AGACTCAAAGTTTCATCTAAATTATCAATGTAATTTTGGTTCAATGcaat
tattaaattattttgtatCTGCTTCAACGTTGGGTATAATTCCAGAATCT
GTTTGATGATGTCTGCTNTTGTATCTGCTTCAACGTTGGGTATAATTCCA
GAATCTGATTGATGATGTCTGCTGATTTTACTTGTGATGTAAACTCTATG
TCAATGGAACTTTTGCTTGTAATCTCTCGTACTTTTGCAAAGAACAAAAC
ACTGACCCTAACTTTTCCACAGTCCATTTAATAATGAAACTTTCTTAAAA
AGAAGTGAATTTTTAACTGTTAATAAAtctattttcagaaaatgaat

Coding sequence (CDS) from alignment at sc0000157:253014..254110

>TCONS_00012926 ID=TCONS_00012926|Name=TCONS_00012926|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000157:253014..254110 (Clytia hemisphaerica)
TTATCCATCTTTCTGTATCCAGAAAGCTTCTTTGTTCTCTTTCCAAGAAC
TTGATTCATCTTCATATATTTCTTTCTTCCAAATAGGGACTCTTGCTTTT
AGCTCGTTAATCCCCCATTCAGTTGCTTGGATAGCTTCTTTCCTATGGGT
TGAAGAAACAGCCACTATTACACTTGATTCCTTGACCTGAACCTCACCTA
ACCGATGCATAATGCAAATATTACCCACATCATAGTTGTTTCGAATCTGT
TGGCAAACATTAACAAGTTCTTTGATTGCCATTGGTTCATAGGCTTCGTA
AAATAGTGTTTTCACAACATTTCCTTTGAAAGAGTTTCTTGTGGTGCCAA
CAAAACAAGATGTGCCACCAGTACACGGTAGAACTATAAAATCAAGAGCC
ACGTTAATATCAAGTTTCTCTTTTGTTATAATGATCAATTCTGTGTCTGT
TGAATGCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007256XLOC_007256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012926-proteinTCONS_00012926-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012926-exon-sc0000157-1491911889:253014..254110TCONS_00012926-exon-sc0000157-1491911889:253014..254110Clytia hemisphaericaexon
TCONS_00012926-exon-sc0000157-1510915933:253014..254110TCONS_00012926-exon-sc0000157-1510915933:253014..254110Clytia hemisphaericaexon
TCONS_00012926-exon-sc0000157-1575043694:253014..254110TCONS_00012926-exon-sc0000157-1575043694:253014..254110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:253014..254110 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.5169	11.883	5.48699	3.78954	5.60918	5.85398	3.23328	4.89074	5.06167	4.01631	4.9687	3.04007	2.92592	1.09276	5.37386	4.76096	6.84356	6.52042	0.628172	1.31315	5.09352	5.12732	15.6449	13.8278	2.59004	4.01055	3.93098	2.8278	7.30769	7.54379
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003448Mopterin_biosynth_MoaE
Vocabulary: Biological Process
TermDefinition
GO:0006777Mo-molybdopterin cofactor biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006777 Mo-molybdopterin cofactor biosynthetic process
Blast
[Close]
BLAST of TCONS_00012926 vs. Swiss-Prot (Human)
Match: MOC2B (Molybdopterin synthase catalytic subunit OS=Homo sapiens GN=MOCS2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.153e-42
Identity = 72/141 (51.06%), Postives = 96/141 (68.09%), Query Frame = 1 
Query:  430 ELIIITKEKLDINVALDFIVLPCTGGTSCFVGTTRNSFKGNVVKTLFYEAYEPMAIKELVNVCQQIRNNYDVGNICIMHRLGEVQVKESSVIVAVSSTHRKEAIQATEWGINELKARVPIWKKEIYEDESSSWKENKEAFW 852
            ++I  T EKL ++     ++ P  G  S FVGTTRN+F+G  V +L YEAY PMA  E+  +C  IR  + V +I + HRLG V V E+S+I+AVSS HR  +++A  + I+ LKA+VPIWKKEIYE ESS+WK NKE FW
Sbjct:   45 DVINFTAEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYE-ESSTWKGNKECFW 184
The following BLAST results are available for this feature:
BLAST of TCONS_00012926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOC2B7.153e-4251.06Molybdopterin synthase catalytic subunit OS=Homo s... [more]
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