TCONS_00012901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012901
Unique NameTCONS_00012901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012901 ID=TCONS_00012901|Name=TCONS_00012901|organism=Clytia hemisphaerica|type=transcript|length=1193bp
TAGAAACTGACCAAGATTCAACAAGGATTCTGGGAACTCGCCTATGGAAT
CAATCCAATATTACACCACAAAGTGTACCTTGGTGGGCAATTAAGCCCGT
TAATGCTGACAACCTGATCATCATCAATGAAGCAATGAAGTTCTTTCAGA
TTGCCATCTTTGCAACTCTGGTGAATCCAGCTTCGGCTGCACCATCAAAC
AGAGCCTCATTCACCAAAGAGATGAACAGGGCCATCAAAAAGATCCCCAC
GATTGCAGTAATACCAACGCAAAATCTACCCACGGTTGTTTTGGGTGTCA
AATCTCCGAAACCCACGGTCGTCATGGTTATAATCAACATCCATACTGTG
TCCTGTAGacagaaaacgaaagtgaaagtaatttatttcatttactGACA
CAACCCAACTTTTTTAGGGATAGATCTAAGAGAAAATGTTAAGTAGTCAC
TATCAGCTATCAAATAGCATAGGATAATATTCAACACGATTTAGAAATAT
CTTTCAATGAACAtgagaaatttattttattatccATGTCGTAGTGCGGA
GTGCCTCCAATTAGTCTCcccaattattttttcaaagattgtttcttaag
agctctgaccatagtgaatttttcatatttgccgTGTGCAAAATATAGAT
CTacctgatgtaaccaacaattacttcaaaatttcaatgaaaaaatttga
cgaagaagaaaatgaagacttttgcgaagaagagtatttcaacatTGCAG
ACCTTATTTAcagcgaagaaaaaacattttgaaaatttttttgcgttgaa
tggtgtatctttaaccaaactaaaaatagattttcggaaattatttataa
aagcttctttgtctcaatcAGTGTTGGCCGGGCTTGTAGAACATCAATAA
ATTAAGTTGGTCTCGCATATCATAACGTGAACTATATCTCATCATAACGC
ATCATATTTTGAAGCTCTATATTCAGGTCACATTTTCATGATTGTGACat
catcatttgaaaatttgtgtgATAAGGCAGGTTTGATCAGTTGATAGCTT
GCTTAagtgtttttgaaactttttggatCATTCTTTTTGAATTACACACT
CTACAGCCCTTGAGATTTGAAGAGTTTGTTTCCACAAAATTTGGAGACAA
AACCTCTGAATGATCTGTTTGATAAGGGCTATCAACAATTGAG
Run BLAST on NCBI

transcript from alignment at sc0000157:206464..212052-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012901 ID=TCONS_00012901|Name=TCONS_00012901|organism=Clytia hemisphaerica|type=transcript|length=5589bp|location=Sequence derived from alignment at sc0000157:206464..212052- (Clytia hemisphaerica)
TAGAAACTGACCAAGATTCAACAAGGATTCTGGGAACTCGCCTATGGAAT
CAATCCAATATTACACCACAAAGTGTACCTTGGTGGGCAATTAAGCCCGT
TAATGCTGACAACCTGATCATCATCAATGAAGCAATGAAGTTCTTTCAGA
TTGCCATCTTTGCAACTCTGGTGAATCCAGCTTCGGCTGCACCATCAAAC
AGGTAATTCCCTTGACGGTACATAATCAACAGTGTCCTCGTGTTCCCCAT
CCGTACACACCAACAAACTACTTATCAAATTCTCCAAATCACAAATATCC
TGCCGTGTTTTGTAATAAATATCATCTAAAGCATTGTTCATGATCTGAGC
TTGGTTTTTCAGTAATTTAAATGCTACTATAAGTTCATTTTTACGTATAA
CTTGTGAGTCGTCATTTTGATGTTTTTGTATGAAATCTTGTACGTTTTTA
CGACTCCGTGTGACATAACGATCTATTTGCTCCATTTTGAGTCCACCATA
ATTGTTATTTTTGTTGTTATGGCTACCGCCATTTAATTGGGGTCGTGTAA
CGTTTGAGAAGTTGATATTTTTCGGGGACGTGTAGTGGCAATTACCATTG
TTTTGAATACGCATATGTGAATCTTTGATTTCATCGTGACTTTTGGTAGT
GATTGATGTCTTCGGTTCCTTCTGGAAAAGATATTGTATATTGGATTTAT
TCGTTGGCAAAGAACCATAGCGATTACTTGTTTAGAACACTCGAATTACA
AAAGTCATGATTCGATTAGTCGAACTGAACGAACCCAATTTATAATCGAA
TAAGATTTAAGCAGCTGATTTAAGGCATAATTAAAGGCATTTAAGGCATG
ACCCCTGCTTAAAATTTCAGTCAATCCAGGTTTAGCCTTGTTCTTAAATT
ATTCTTACTTTGCGGCGATTTTGACTTTGAGCCTGTTCTTATACTCTAGG
GGCTGAGTTAGGTCCCGTATGCGCATCGGCGTATAGTCATTTTTTCTTTT
GATCATGAAAATATAGTCCTTGAAGAGTCAGAAAACGTGTGTGGCGTTAT
TTGGATCAGGCTCAAATTTCCATAATGGCGGATTTTAGATTTCAACCCTT
TTTAGCCCTCAAAATTAGCTTAAAACCCTGCATATTATATACCAATCGAT
TAGAAATGTTATACTGATTAAGAAAAAGGTCAGAACTATGGTCTGAAAAT
TTCGTTATCAAGAAATACGAAGTACTTACGTTTTCTAAGTTTTGAAAACG
AAAGTACTTCATAGCTAGAGATAGAAAAATTTTCAGACCATGATTCTGAC
CTTTTTCTTAATCAGCATAAAATTTCTGATCGATTGGTATATAATATGCA
GGGTTTTAAGCTCAAAAAATATTTTTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTAAGCCAATCAAA
TGTTACAGCCACGCAAATTTGGAACCAAAAGTAGTCATTTCAAAAAATCA
AAATCGAAAGTGCTTCATATCTCCAGATAACGAAACTTTCAGACCATGGT
TCTGACATTTTTCTTAATCAACATAAAATTTGTGATCGATTGGTATATAA
TATTACTATGTTTAAAGTTAAAAAAAATTTTTTTTCAAGCAATAGGGCTT
GAAAGGGTTGAAAATCTAAAATCCGCCATTATGGAAATTTGTGCCTGATC
CAAATAACGCCACACAAGTTTTCTGACTCTTCAAGGACTATACTTTCATG
ATCAAAAGAAAAAATGACTATACGCCGATGTGCATACGAGACATAACTCA
GCCCCTAGAGTATTATTAAAAAGAAGATAAATTATTCTACCTCTTCTTTG
GTCTCCTTCTTTTCAACACTCTTCTTCTTTTTATTCTGTTCTTGAATATT
CTTCAAATCGACAGACACATTATCTATTTTGTCATCCAGTTCATTGAATT
TGCTGCTCAAATCAGTCATCATATTTTTCATGTCTTCTATCATAAATTCT
TGGGCGAAATAATTTCCTCCACGAGCTAGAATGAAGAAATAAGAAATGAA
GTAAATTCAAAAACAGTTGGGTCCTTGTAAGTAAGTAAGTGTGCGACCGC
AGTCGAGGACAACCCAAAGGCTCCCTTTTCGTATAGCTGTCTACCCAGCT
AGGATAGGGTGCCACTCCTTTACTTGGACTTCTCCACTTACCCTTAATCC
GTCTCTTTAGTTGCTGAGCATCAAGCAGAGAGGCATCAAGTACCATTGGG
AATCTTTGGTATGATCCGGCTGGGGATCGAACCCACAACCTTGTGCACCG
TAGCTGGATGCTCTACCTTCATGCTACGGTCGATTGTAGTAATCCGATCT
TCTATAGGCCAAAACGAATTAGGCAAATCAGGGGCCAAAATTTATGATCA
ACCTACGACTCTTGCGTTGAGCCCTGTCCGTAACGTTATGAACTGCATGT
TTTTTTATGTAAGCATTACATTTATAAGCATATGCAGGCTCAGTTTTTTC
GAAAAATAGCTCAATTATTTAAGAACAATAGAATGCTAGGCATAATGCAC
GCCTGTTAAAGGGTAGTAGACATGTAATTGCCAGCGAGGGTATTCACTCA
TTGCCTAAAGGGCTACATACACTACACAGTATATTATCGGGCAATACATA
TTCCAGCAATATAGGGGGTTTGTTTACAGAAAGAAAATTCTTTTTAAAAT
TTTTTAAAAGCACCTGTTGTTTACTTCATACATTACGGGCCGCAAACTAT
ATTGTCAAATGTTGCTCACCAATATATTGTGCAGTCTAAGTGATGGCCTC
GCTTATCTCAAGTATAACCGTTCGATCTAAATTGCTCACCGTTTTTGATT
TTCCTCCATTCATTTACCGCATGAAACATATCGGTCTCCAATAATTTTCC
TTTGATTTTGTTCATCAAGTCTTGATGGGTGGTCCGGTCGTTTCGGAAGC
CTCCGATGAAAGATGCGGACTCTCCCGAACGCCGGATATGTTTGTTTCGG
TGTGCGTAATATTTGTACCATAACCCAATTGCATTCAAAGCGGTTATCTT
TCGATGTCTTGTTAAATCTGTAAATTTGAAATGATAGGTATTGTGATTTA
TCACAAGCAAAAAGTGACGCTCACTTTTTTGGCAACATTTTGAGGCTCGA
GTGGTCTCAGAGTTTTAACTCAAGACAAAAAGTACGAGGACCTTTCGTAT
TTTGTGAGCGCTAGACATTTTAAATGTGACCTGATAAATCAATGTCAGAT
TCCCGTCACAATATGACATGCCTACATGACTTATTATACAAGAAAATTGA
CCTTTCTCTCCATTAAAACGAAGGTGGATAATTAATGCACCTTTTTCTCC
TTATCCCGGTAGTGTCCGCTCTTATTTTGTAAACTGCGGGAGTCAAGACT
ACGTCTTTTTATCGATCGTAAAAGGTCCGTCAAATCTAATTATCAATACG
CCCTTAATAGTACTTGACTGTATACTAGTAAAGGACATGTTGATTATTAG
ATTTTTACGGATCAGATACTTAACCTCTTCTCTTCACAGTCCTTACCTTG
GTTTTCAACGTAAGCTAATATTCTTTTCTCTCTTCTTTGCAACATCAGAG
CCTCATTCACCAAAGAGATGAACAGGGCCATCAAAAAGATCCCCACGATT
GCAGTAATACCAACGCAAAATCTACCCACGGTTGTTTTGGGTGTCAAATC
TCCGAAACCCACGGTCGTCATGGTTATAATCAACATCCATACTGTGTCCT
GTAGACAGAAAACGAAAGTGAAAGTAATTTATTTCATTTACTGACACAAC
CCAACTTTTTTAGGGATAGATCTAAGAGAAAATGTTAAGTAGTCACTATC
AGCTATCAAATAGCATAGGATAATATTCAACACGATTTAGAAATATCTTT
CAATGAACATGAGAAATTTATTTTATTATCCATGTCGTAGTGCGGAGTGC
CTCCAATTAGTCTCCCCAATTATTTTTTCAAAGATTGTTTCTTAAGAGCT
CTGACCATAGTGAATTTTTCATATTTGCCGTGTGCAAAATATAGATCTAC
CTGATGTAACCAACAATTACTTCAAAATTTCAATGAAAAAATTTGACGAA
GAAGAAAATGAAGACTTTTGCGAAGAAGAGTATTTCAACATTGCAGACCT
TATTTACAGCGAAGAAAAAACATTTTGAAAATTTTTTTGCGTTGAATGGT
GTATCTTTAACCAAACTAAAAATAGATTTTCGGAAATTATTTATAAAAGC
TTCTTTGTCTCAATCAGTGTTGGCCGGGCTTGTAGAACATCAATAAATTA
AGTTGGTCTCGCATATCATAACGTGAACTATATCTCATCATAACGCATCA
TATTTTGAAGCTCTATATTCAGGTCACATTTTCATGATTGTGACATCATC
ATTTGAAAATTTGTGTGATAAGGCAGGTTTGATCAGTTGATAGCTTGCTT
AAGTGTTTTTGAAACTTTTTGGATCATTCTTTTTGAATTACACACTCTAC
AGCCCTTGAGATTTGAAGAGTTTGTTTCCACAAAATTTGGAGACAAAACC
TCTGAATGATCTGTTTGATAAGGGCTATCAACAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007237XLOC_007237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012901-exon-sc0000157-1575043694:211851..212052TCONS_00012901-exon-sc0000157-1575043694:211851..212052Clytia hemisphaericaexon
TCONS_00012901-exon-sc0000157-1575043694:206464..207454TCONS_00012901-exon-sc0000157-1575043694:206464..207454Clytia hemisphaericaexon
TCONS_00012901-exon-sc0000157-1510915933:211851..212052TCONS_00012901-exon-sc0000157-1510915933:211851..212052Clytia hemisphaericaexon
TCONS_00012901-exon-sc0000157-1510915933:206464..207454TCONS_00012901-exon-sc0000157-1510915933:206464..207454Clytia hemisphaericaexon
TCONS_00012901-exon-sc0000157-1491911889:211851..212052TCONS_00012901-exon-sc0000157-1491911889:211851..212052Clytia hemisphaericaexon
TCONS_00012901-exon-sc0000157-1491911889:206464..207454TCONS_00012901-exon-sc0000157-1491911889:206464..207454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:206464..212052 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.819309	0.923784	1.32107	0.590119	0.24759	0.292082	0.500048	0.653657	0.469279	0.484203	0.341661	0.585799	0.395667	0.101304	0.239154	0.539784	0.996528	0.69773	0	0.356677	0.558635	0.425986	0.352564	0.400524	0.433312	0.317599	0.206055	0.272222	0.426544	0.659151
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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