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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012872 ID=TCONS_00012872|Name=TCONS_00012872|organism=Clytia hemisphaerica|type=transcript|length=2019bpRun BLAST on NCBI protein sequence of TCONS_00012872-protein >TCONS_00012872-protein ID=TCONS_00012872-protein|Name=TCONS_00012872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp VKTKIGGREVEVISESQFINNIPRTESIFLIKQENMSTPAGTGSPRFNDIRun BLAST on NCBI transcript from alignment at sc0000157:67922..91307+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012872 ID=TCONS_00012872|Name=TCONS_00012872|organism=Clytia hemisphaerica|type=transcript|length=23386bp|location=Sequence derived from alignment at sc0000157:67922..91307+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000157:67922..91307+ >TCONS_00012872 ID=TCONS_00012872|Name=TCONS_00012872|organism=Clytia hemisphaerica|type=CDS|length=33288bp|location=Sequence derived from alignment at sc0000157:67922..91307+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012872 vs. Swiss-Prot (Human)
Match: KCC2G (Calcium/calmodulin-dependent protein kinase type II subunit gamma OS=Homo sapiens GN=CAMK2G PE=1 SV=3) HSP 1 Score: 645.966 bits (1665), Expect = 0.000e+0 Identity = 322/545 (59.08%), Postives = 397/545 (72.84%), Query Frame = 1
Query: 136 RFNDIYELKDELGKGAFSIVKRCIHRENRMEFAAKIFNTRKLSSRDLQKLEREARICRMLKHPNIVRLHASIPEDGVHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVLHCHQLNIVHRDLKPENLLLASKEKGAAVKLADFGLAVEVDGEKPAWHGFAGTPGYLSPEVLRKEPYGKPVDVWACGVILYILLVGYPPFWDEDQHRLYAQIKAAAYDYPSPEWDSVTKEAKELIDLMLTVDPKRRISASDALKHKWISERHVCASTFHRQETINGLKKFNARRKLKGAMLTTLLVSAGTKVLGAFGQKKXXXXXXXXXXXXXXXXXXXXXXXXNI--PAGMQMRSGTVMEKKMTASVSEAESIEIVDGEAAAKDKLMNDKVHK------ESEDDVILPNEDDEMRA-------KEQEIIKLTQRLIASITIGDFETYSKLVDFRLTCFEPHGKGNLVEGLDFHKYYFDNVLKPSNSPVNTTILSPHVILLSDESACISYIRLTQKIDHNNQPYTVQNEETRVWQRKGSNWLCVHFHIS 1725
RF D Y+L +ELGKGAFS+V+RC+ + + E+AAKI NT+KLS+RD QKLEREARICR+LKHPNIVRLH SI E+G HYLVFDLVTGGELFEDIVAREYYSEADASHCI QILESV H HQ +IVHRDLKPENLLLASK KGAAVKLADFGLA+EV GE+ AW GFAGTPGYLSPEVLRK+PYGKPVD+WACGVILYILLVGYPPFWDEDQH+LY QIKA AYD+PSPEWD+VT EAK LI+ MLT++P +RI+A ALKH W+ +R AS HRQET+ L+KFNARRKLKGA+LTT+LVS + KKS ++S+ + ++ PA T ME + T + + I+ G + + D+ K S D P+ + + ++QEIIK+T++LI +I GDFE Y+K+ D LT FEP GNLVEG+DFHK+YF+N+L ++ P++TTIL+PHV ++ +++ACI+YIRLTQ ID +P T Q+EETRVW R+ WL VH+H S
Sbjct: 9 RFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLVSRNFSAAKSLLNKKSDGGVKKRKSSSSVHLMPQSNNKNSLVSPAQEPAPLQTAMEPQTTVVHNATDGIK---GSTESCNTTTEDEDLKARSPEGRSSRDRTAPSAGMQPQPSLCSSAMRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCS 550 The following BLAST results are available for this feature:
BLAST of TCONS_00012872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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