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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012866 ID=TCONS_00012866|Name=TCONS_00012866|organism=Clytia hemisphaerica|type=transcript|length=561bp
CAGAGATTTTCAAACGCCTACGATTCCACACCTTCACCTGGGATGTATAA
TGATCCACGCCGCGCCCTTGAAATCTGTAACAGAATAAGTGGAATGAAGA
AAAGTCCGTTCGGTCAAACTTCAACGCGATTTCGAAAAGACCACCATGTT
CGCAAAACACCAGgaCCTGGAACTTACAATCATAAAGACATAGCTACAGA
TTTAAAGAAGCAAGCAAAGTCCTGGAGAATACGAGGTCAAATCGAACATT
CAACAATCGAGNTCGTTTGGCACCATTAGATTGTAAAGATGATCATCCAG
GTATCAACTCTATATGATGACAGCTACATCGAATAACGGCAAAATAACCA
AAATCCTCGATATTTTGAACTTCATTGTGGTCTTAGCTGACGCTACGGAA
CCTTTCTATTCTGCAGGCTGACCCGAAAGCAAAGTAGACCTGGCTTACCC
TGCAAAGAAATAAACTTTTCTTCTCATGTGAAAAAAACCCATTCCATGGT
ATCTATAGATACTTATTCTCGCTTAATATCGAGTGTAAATTAGTTTGAAA
ATGCATTAAAC Run BLAST on NCBI transcript from alignment at sc0000157:48441..55517+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012866 ID=TCONS_00012866|Name=TCONS_00012866|organism=Clytia hemisphaerica|type=transcript|length=7077bp|location=Sequence derived from alignment at sc0000157:48441..55517+ (Clytia hemisphaerica)
CAGAGATTTTCAAACGCCTACGATTCCACACCTTCACCTGGGATGTATAA
TGATCCACGCCGCGCCCTTGAAATCTGTAACAGGTAGGTACTGTTTGGTT
TTTATGCTCCTTCGAAGCTAGGTTAAGACTTTCCAcattacaaaattttt
gaatacttcggatatttttaatttcttttgaaatgctcctaatttcacca
ttttgtaagtatttttatgCAATTCCTTAAGACATTGGATGTTTTAGTGC
CCTTAAgcctttaaaatattcttaacttgatCTTAGTATTTCAGCCATTT
TAGCCTGATGATCATAGATANTAAATATCGCTGTAACAACAAATTTACGT
AATATATATAAACATGTGTATACGTAATTGAAAAAGGACGCAAAATTAGG
GCTATTAGCCAATAAGATAATGAGAAATTTTAACTAATCTGAGAAAACCT
TTTTCATTTAGTTACCAAGATATCATGAAATTGTCACTAAACAAGAAACA
AAGAAGGTAAATTTTATCTATCCTCTTTATGAGGGTGAATTGAAAGATTA
GTTGTACTAACCAATCTACAGGGTTAAACAGTTGTAAGAAACCCTGGATG
TGAcaataattactttttaaaccAAATGTTCCGACCATTAGCAATTTTAT
GTATCTATCTGATAATTGTAATTATAATTAAAATGGTGTTAAAACGATGC
TTTCATGCCTAAAATANTTTTTATGTTATTTGGAATTTCTCCTCTCGATT
TTAGAATAAGTGGAATGAAGAAAAGTCCGTTCGGTCAAACTTCAACGCGA
TTTCGAAAAGACCACCATGTTCGCAAAACACCAGGTAATGAGTTATAGTA
CTGATTCTACCAGGAGTCTTATTTAGGCTCGGTAAGATGCGAATTTCGTC
AGTCTAAGACACANTGAAGCGAAGAAAGTAAATGATAATGCTACAGAAAG
ACCATCTTTCGGATCACAAGCTAAAGTATGCACAAATATCATATTTCTTT
ACACACTAGATGAGCTAATTACTCACAGATTTTTTCCGTGGAAGTGTTTC
CAGTTTTGAAGTCGGCAAGTCCGCCATGATGTTTTCtaatttactttttc
aaaagaatcgTTCGAATCTTGGAGCATTCGGATCGCGCTTTTTAcgacca
gaattgaaaacaagatggaGCGGAGGGCTTGTCAGCTTTAAACTGGTCAC
GCTTCTTTTTATATGGGAAGCCTGATTATCAAGTAGTTAGTGAAAAACTA
TNACTATACTAATAAGTTTAGTACGCAAGTGGACAGATTCGTAAAAATGA
TTACTTTAGGCACGCACAAAGTTTGTTAAACAAGTTAAAGAAATGAATTA
CAAAAGTCCTATGTATTAAATATGCTATGCAAAGGTTGTAGTCCTAACAA
ATCATACNTCGATAATTAAGTCCCACGTGGTGAACGAATTAATGAAAGAG
ACTTGGGTTGgtgaaaaaagttatttttttgatGTAAAATAATGCTACTA
CAGNTAGTCCTAACAAATCATACGTCGCTGTTTACTGGTTGAGAAGATAT
TACTCTACTTCAGTGTGGTCTTTTAAATCAACATCATCTGGCGTTGATAT
TCGAGTATAAACTTTGTACCGATAGCAGAAAGCTACGGGTATGTGTGGGA
TACCTTAGGATAGGTAAACTTTTTCATTTCCGGGTAAACTTTCTTTGTGC
ATtcagtgttgcaacttttccgTCCAGCTGAGATACAAATACGCTATTTC
CGTCCTTCCAGCAGTAATGATTTTGTTCAAAGGACTCACTAAACCAaaga
ttttttaacaaattccGTCCATAGTTACAAAACCTGGTTGCAACACTAAT
TTACGGGATCCTTCTGCTGTTTTTACGGGCATGCCGGCAATGTTTTTTTG
CTGCGTACAAATTGCGTAAACAACACAGAACGGCTCTGAGACTGACCACC
TAACAAGCTGAAGCGACTTTTTACCTATCCAGTGTAGTTCTTTCTCCGTT
GTTAGAGTGGCAATAAGTTTCCTACATCCTACAGTATGATTCGACTTTAT
GAACCGTGAAATTCTTTCTATACCTATCACTCATCACATCCTAAACATCG
AGTAATCATAGATAGCTACTCGGTTGTACCATAGTTATATCTTCACTAAT
GCCACCGACAGGTATGGAGTCCCCAGAGCTAATCATTTCATAATTCACAT
TGCCATTCAAATGTCTGGATATATCACCACTCACATCATCTAAAATATCC
CTGGTAACATTTTGATCGACATTGTTGTGATTATATGGTGAATTTTCATA
AGGATCATTTATAATGGGTTCTACCGTaaatttgcatttataaaaACTAC
CTTTATGTCTCACAGTCCATTCTCGATAGCTCAATGAAGCAGCATTGTCT
ACCATTGACATTTGATCTGGATCAACTTCTTCTTTGATGCGTATCTTCGA
TGGTGGCTCTATGGTCGCTTTTTGTTCATTTATGCACATTGAAGCACCTG
ATAATGTATTTCCGGAACTGTACACTTCCCGAGGAAGTAGTGTATTTTGA
TCACTTTCACCCATAGAATTCTCATATAAAGAATCTGTTGGCTCCTTCTT
AGAATGTTGTATATCGTTTTCCTGCATATTTGATTGGTCTAATACACACA
TAGAAGGAGGACATTGTTCATCTCTCTTCTTCTGTTCCGCTATTTTAGAT
TTGATATCTCGAACTTGTTTTTGACTTAGCCCAGCAAAATCATCTTTCAC
TCTGGTATAAATCTTTTTATAACCAGCTGGTTTATCTTTGTTAAGATTAT
CAACAATAGCTTTGATTTGACTTTTCTTGATCacctaaaaatgaaaacaa
aagtaacaAATAGTCAATTTGTTGGAGTGTTACCTTCCGTTcgcatacag
ttgacgctctctaatttcgACGTTGTACTATTAGATATGATCCATTACTC
GATTGCTCCATTGAAAGTCTCCTTCAATAATATTGTCTCATAAACAACAC
TCTTGAAAATTCCAATCCTCCTTgaaagtcgaattagagagcatcgattg
agaatttttttttttttttagacatCTAAGCTAAGGAAGATTAGAATTCG
GACTGACGACTTCTCTATTACCTTTGGTTTCTCAGTTGTTGTTCATATTT
CTTGGCATCCTTTTAAGCTTTTTCGGCACAACAGAAATCTCTTTCAAAAA
GCCGATCAATACAAAAAGCAAACTTTTACCAATCTAACCCTAACGCCAAA
AGGGTATTCGTCTCCAGTTTACAAAAGAGAATGGGaacgaaaatcttttt
gaatttgTGAATATGTCACTGTTTTTCAAGTCTAGTGCAGCCTCAGTAAG
CCTCATGTCANTGAAGCACCTGATAATGTATTTCCGGAACTGTACACTTC
CCGAGGAAGTAGTGTATTTTGATCACTTTCACCCATAGAATTCTCATATA
AAGGATCTGTTGGCTCCTTCTTAGAATGCTGTATGTCGTTTTCCTGCATA
TTTGATTGGTCTAATACACACATAGAAGGAGGACATTGTTCATCTCTCTT
CTTCTGTTCCGCTATTTTAGATTTGATATCTCGAACTTGTTTTTGACTTA
GCCCAGCAAAATCATCTTTCACTCTGGTATAAATCTTTTTATAACCAGCT
GGTTTATCTTTGTTAAGATTATCAACAATAGCTTTGATTTGACTTTTCTT
GATCacctaaaaatgaaaacaaaagtaacaAATAGTCAATTTGTTGGAGT
GTTACCTTCCGTTcgcatacagttgacgctctctaatttcgACGTTGTAC
TATTAGATATGATCCATTACTCGATTGCTCCATTGAAAGTCTCCTTCAAT
AATATTGTCTCGTAAACAACACTCTTGAAAATTCCAATCCTCCTTgaaag
tcgaattagagagcatcgattgagaatttttttttttttttagacatCTA
AGCTAAGGAAGATTAGAATTCGGACTGACGACTTCTCTATTACCTTTGGT
TTCTCAGTTGTTGTTCATATTTCTTGGCATCCTTTTAAGCTTTTTCGGCA
CAACAGAAATCTCTTTCAAAAAGCCGATCAATACAAAAAGCAAACTTTTA
CCAATCTAACCCTAACGCCAAAAGGGTATTCGTCTCCAGTTTACAAAAGA
GAATGGGaacgaaaatctttttgaatttgTGAATATGTCGCTGTTTTTCA
AGTCTAGTGCAGCCTCAGTAAGCCTCATGTCAGCCTGTTTTTTAATTAAG
ATGTATATAATAAAACCATTTTAACATACCTTTTTCCCCTTATAATACAA
TACATCTTCTTCAGCAGTGAATTTTCCATTGGATCGCCAGAATTTAATGA
CAGcattcttttgtattttactTCTAGCTTTGACGGGAACAGCAAAAGTC
TTTTTAGCTAATGCAACCAAAGTTTCATATTCTTCATCGCCAACTGCGTG
AATGCTGCTCATTTTGTTTAATGAAACGTTCGTTTTTTGGACCTTTAATA
CTGTAAAGCTTTGATAAAAAAGCAGACGAAAATATAACAGTAAAAGTCTA
TTATCTTGAACATTGGGAACAGGctcttttttaactttctttgaaaaatg
ccaTAATATTTGCCAAAACTCTTCATTGCTTCTTAAATTTCCACAAAGAA
AATCGGTCTAAtcccaaaaaagttgaaaaggatATGTACAAACTGGGTAC
CCCCCAGACAAAAAGATTCTAATTGATAGGGTTTGCTATATGTACGACTA
CAATACATGCATCTTTGTCATCTAAAGAAGGGAAAGAGCGCTACCCAGGG
CTACAccataaaaaaaatatcactaagttttttacaaaattcaaaatagt
cTATAAAGTTATTTACAAGGGAAGGGAATCGAAAATAAATTGCACCTTGA
GCTACACCTCTAAAACGAAATTATCCCAGAAACAAATGTTACtgtatttc
ataaaatttattAATAAAACAGTAAACTACACACTACATACTTTTCTCTA
TCACACAACATGAGTTTTCTCTCATTACATTTCtcaacagaaaaaaaaca
cattcaCAAAATATTATTGCAAAATGAGTCGACTTCATTTacataacaaa
agaaaaaaaaactgtcaAATATTTGCCGATATTATTATGAAAGAATTAAC
CAATCAACACTTAATTATGATAATTTATGCAACCGTGTCTGTAATGTATG
ATAATTATGACGTTattctctctttttctttgaaaaggaCCTGGAACTTA
CAATCATAAAGACATAGCTACAGATTTAAAGAAGCAAGCAAAGTAAGTTG
AAAGTATTATATTTGTACAGTGaagtaaaatagaaaaatattcaGTAAAC
TTTCATGCATATATTTTGGCATCTTCTTGCGCACACTTTGTTGAAAGTTT
CATATCGTCCACTTTTAAGTTATCtggttgaaattcaaaaatttttatac
gACACGCTAAAGTTCTGAAGGTGGcgaaattttaacatctggaaggttta
gattacggaattttgcaagaccgcgcCAAGGACTTTACAGCGGGAGGTTT
GAaccccagccctcgttttcggggATTTTTGGTCAAACCAAAATACTTTC
AGGTTTACACGCAAGGTTACAATCAAGGTCATAATATATTGAGAATTTTG
GTTATTTTAACGTTTTTCAAGAAGTTCTGGCGAGAAAGTCGATTTTGGGC
TATCTCTTTAATTTAATCGAATATTTCAATTTGGGAGGGGTTGGAAGACT
TCCAGGCTATATTCTGAGTCTTATTGGACTATTTTTGAACTTTTGGATCC
TCATATTTATCCTAAGGTCTTCCTAAAGTCTTAAGTCTCATGTTAAAACt
ctacccttccaacctactttagagcacttacaaatcgattgtggttcaaa
aacttcccggtggatttcccttttttctcaaatattatgaccttgattgt
ctctGAATCCACCAGGAGATACGGCACGTCAAAGGTTGACNGCTTACCTA
AAGAGGTAACTTTATCAATtactaaaaataatgaaaacggTAGGTAATTT
GAAACTCTGAGTATGTGTGGCTATAAAAAGAATATAACGCCTGACTCCTC
AAACAGCCAAGACTATCTTTTACTACATTGTACCAAGAATGATAGACAAA
ATTTCATCTTGNATGGGATTTGGCccctcctttagagctttagcgtgggc
ggtcGCCAATCTGCCATCGGAATGTTCGTTTTTTCgttgttcgtctgttc
gtccatTCGTCCgagatcggctcattagtttttttctgattttttttgca
tattgatgcaaaatggcagtacccaaaaagtgacggtgccccatttttga
agaaaaaaaattgggcgaatttgggccaaaaagtgcctgaAAATATTCTC
CTTACTTCTTCTGAATTTAGTCCTCTAAACTACTACTTATTCACACTATA
TGCAATTAAAAGATCTTGAAAGCAATTCTTGAAGCAGAGTCTCAAAAANA
AAAgagtttctcaaaatttgtgctAGTGCGTCGCGGGAGGAGGATAAAGT
TgttctttcaatttttaaggTGTTTTAAGTTGCAAAAATTTGAGTAATAA
TtcccatttttttccaaaaattttgccCCTCCCCCTCACTTCAAATTGCT
CGCCGGGGCATGGGTAGGAGATACGTTAAATGATGGTGTCCTTTAAAGAT
CGTTTTTATTACTAGTAAAATATGTCACTTATAGGTCCTGGAGAATACGA
GGTCAAATCGAACATTCAACAATCGAGNTCGTTTGGCACCATTAGATTGT
AAAGATGATCATCCAGGTATCAACTCTATATGATGACAGCTACATCGAAT
AACGGCAAAATAACCAAAATCCTCGATATTTTGAACTTCATTGTGGTCTT
AGCTGACGCTACGGAACCTTTCTATTCTGCAGGCTGACCCGAAAGCAAAG
TAGACCTGGCTTACCCTGCAAAGAAATAAACTTTTCTTCTCATGTGAAAA
AAACCCATTCCATGGTATCTATAGATACTTATTCTCGCTTAATATCGAGT
GTAAATTAGTTTGAAAATGCATTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012866-exon-sc0000157-1491911889:48441..48523 | TCONS_00012866-exon-sc0000157-1491911889:48441..48523 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1510915933:48441..48523 | TCONS_00012866-exon-sc0000157-1510915933:48441..48523 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1575043694:48441..48523 | TCONS_00012866-exon-sc0000157-1575043694:48441..48523 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1491911889:49195..49274 | TCONS_00012866-exon-sc0000157-1491911889:49195..49274 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1510915933:49195..49274 | TCONS_00012866-exon-sc0000157-1510915933:49195..49274 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1575043694:49195..49274 | TCONS_00012866-exon-sc0000157-1575043694:49195..49274 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1491911889:53678..53732 | TCONS_00012866-exon-sc0000157-1491911889:53678..53732 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1510915933:53678..53732 | TCONS_00012866-exon-sc0000157-1510915933:53678..53732 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1575043694:53678..53732 | TCONS_00012866-exon-sc0000157-1575043694:53678..53732 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1491911889:55175..55517 | TCONS_00012866-exon-sc0000157-1491911889:55175..55517 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1510915933:55175..55517 | TCONS_00012866-exon-sc0000157-1510915933:55175..55517 | Clytia hemisphaerica | exon |
| TCONS_00012866-exon-sc0000157-1575043694:55175..55517 | TCONS_00012866-exon-sc0000157-1575043694:55175..55517 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:48441..55517 + |
Blast
The following BLAST results are available for this feature:
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