|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012858 ID=TCONS_00012858|Name=TCONS_00012858|organism=Clytia hemisphaerica|type=transcript|length=905bp
CTTTGGCTACTACCCGGAGCCTTCGAAATCGTGGCTCATCGTCAAAGAAA
GCAAGCTTGAGAAggtccgtgaaacttttgaaggTACCAAAATTAAACTG
ACAACCTCTGGACGAAAATACCTTGGTGGCTTCATTGGAAGAGCAGAAGG
AAAAGATGAATACGTGAACGGGCTTGTCCAACAGTGGTGCTCTCAGCTAA
AAGTACTGTGTGATATTGCCAAGTCCGAACCGCAATCTGCCTACGTAGCT
TTTATCGCTGGTTTCAAGCACAAACTCACATACCACATCTTAACAATCCC
TGATATGCACCAATACCTTGCACCTTTCGACCTTATCCTCGACACGATAT
TCATTCCAGCTATCACCGATGGTCATCATTGCTCCACCGATGAGCGCCTT
TTACTATCACTGCCACCAAGAAAAGGCGGTCTTTCAATCCCTATCTTTAC
CACGTGGTCAATAACAGAATTCTCCAGCTCACAGAAAGTAGCTTCCAACC
TGTCCAGCCGAATAAAGAACCAAAACGCAAGCAACGTCGACATACCTGAC
GACGCTAAAGTCAAGAAAGAAATCACCAAGTCGAAGGAAGATCGAGAAAA
CGATACATTGAATGTACTTAGGGAGAGGATGAGCGTTGAGCAGCGAAAAG
CAAACGAACTCGCTTCTTGCAAAGGTGCTTCAAGCTGGTTAACGATCATA
CCGGTTGAAAGCGAAGGCTTCTGTCTGAACAAAAGAGAATTTGTTGATGG
CCTTTGCTTGAGGTACAGATGGACACCGAAATACCTTCCGATCAATTGTG
CATGTGGCCTTCGATTCGATGTCGACCATGCCCTTTCGTGTCCGAAAGGA
GGTTTCATCCACCAACGCCATGACGTGATGAGAAACCTCTTGGCCAACCT
CCTTT Run BLAST on NCBI protein sequence of TCONS_00012858-protein >TCONS_00012858-protein ID=TCONS_00012858-protein|Name=TCONS_00012858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
FGYYPEPSKSWLIVKESKLEKVRETFEGTKIKLTTSGRKYLGGFIGRAEG
KDEYVNGLVQQWCSQLKVLCDIAKSEPQSAYVAFIAGFKHKLTYHILTIP
DMHQYLAPFDLILDTIFIPAITDGHHCSTDERLLLSLPPRKGGLSIPIFT
TWSITEFSSSQKVASNLSSRIKNQNASNVDIPDDAKVKKEITKSKEDREN
DTLNVLRERMSVEQRKANELASCKGASSWLTIIPVESEGFCLNKREFVDG
LCLRYRWTPKYLPINCACGLRFDVDHALSCPKGGFIHQRHDVMRNLLANL
L Run BLAST on NCBI transcript from alignment at sc0000156:435107..436011 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012858 ID=TCONS_00012858|Name=TCONS_00012858|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at sc0000156:435107..436011 (Clytia hemisphaerica)
AAAGGAGGTTGGCCAAGAGGTTTCTCATCACGTCATGGCGTTGGTGGATG
AAACCTCCTTTCGGACACGAAAGGGCATGGTCGACATCGAATCGAAGGCC
ACATGCACAATTGATCGGAAGGTATTTCGGTGTCCATCTGTACCTCAAGC
AAAGGCCATCAACAAATTCTCTTTTGTTCAGACAGAAGCCTTCGCTTTCA
ACCGGTATGATCGTTAACCAGCTTGAAGCACCTTTGCAAGAAGCGAGTTC
GTTTGCTTTTCGCTGCTCAACGCTCATCCTCTCCCTAAGTACATTCAATG
TATCGTTTTCTCGATCTTCCTTCGACTTGGTGATTTCTTTCTTGACTTTA
GCGTCGTCAGGTATGTCGACGTTGCTTGCGTTTTGGTTCTTTATTCGGCT
GGACAGGTTGGAAGCTACTTTCTGTGAGCTGGAGAATTCTGTTATTGACC
ACGTGGTAAAGATAGGGATTGAAAGACCGCCTTTTCTTGGTGGCAGTGAT
AGTAAAAGGCGCTCATCGGTGGAGCAATGATGACCATCGGTGATAGCTGG
AATGAATATCGTGTCGAGGATAAGGTCGAAAGGTGCAAGGTATTGGTGCA
TATCAGGGATTGTTAAGATGTGGTATGTGAGTTTGTGCTTGAAACCAGCG
ATAAAAGCTACGTAGGCAGATTGCGGTTCGGACTTGGCAATATCACACAG
TACTTTTAGCTGAGAGCACCACTGTTGGACAAGCCCGTTCACGTATTCAT
CTTTTCCTTCTGCTCTTCCAATGAAGCCACCAAGGTATTTTCGTCCAGAG
GTTGTCAGTTTAATTTTGGTAccttcaaaagtttcacggaccTTCTCAAG
CTTGCTTTCTTTGACGATGAGCCACGATTTCGAAGGCTCCGGGTAGTAGC
CAAAG Coding sequence (CDS) from alignment at sc0000156:435107..436011 >TCONS_00012858 ID=TCONS_00012858|Name=TCONS_00012858|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000156:435107..436011 (Clytia hemisphaerica)
AAGGAGGTTGGCCAAGAGGTTTCTCATCACGTCATGGCGTTGGTGGATGA
AACCTCCTTTCGGACACGAAAGGGCATGGTCGACATCGAATCGAAGGCCA
CATGCACAATTGATCGGAAGGTATTTCGGTGTCCATCTGTACCTCAAGCA
AAGGCCATCAACAAATTCTCTTTTGTTCAGACAGAAGCCTTCGCTTTCAA
CCGGTATGATCGTTAACCAGCTTGAAGCACCTTTGCAAGAAGCGAGTTCG
TTTGCTTTTCGCTGCTCAACGCTCATCCTCTCCCTAAGTACATTCAATGT
ATCGTTTTCTCGATCTTCCTTCGACTTGGTGATTTCTTTCTTGACTTTAG
CGTCGTCAGGTATGTCGACGTTGCTTGCGTTTTGGTTCTTTATTCGGCTG
GACAGGTTGGAAGCTACTTTCTGTGAGCTGGAGAATTCTGTTATTGACCA
CGTGGTAAAGATAGGGATTGAAAGACCGCCTTTTCTTGGTGGCAGTGATA
GTAAAAGGCGCTCATCGGTGGAGCAATGATGACCATCGGTGATAGCTGGA
ATGAATATCGTGTCGAGGATAAGGTCGAAAGGTGCAAGGTATTGGTGCAT
ATCAGGGATTGTTAAGATGTGGTATGTGAGTTTGTGCTTGAAACCAGCGA
TAAAAGCTACGTAGGCAGATTGCGGTTCGGACTTGGCAATATCACACAGT
ACTTTTAGCTGAGAGCACCACTGTTGGACAAGCCCGTTCACGTATTCATC
TTTTCCTTCTGCTCTTCCAATGAAGCCACCAAGGTATTTTCGTCCAGAGG
TTGTCAGTTTAATTTTGGTAccttcaaaagtttcacggaccTTCTCAAGC
TTGCTTTCTTTGACGATGAGCCACGATTTCGAAGGCTCCGGGTAGTAGCC
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012858-exon-sc0000156-1491911889:435107..436011 | TCONS_00012858-exon-sc0000156-1491911889:435107..436011 | Clytia hemisphaerica | exon |
| TCONS_00012858-exon-sc0000156-1510915933:435107..436011 | TCONS_00012858-exon-sc0000156-1510915933:435107..436011 | Clytia hemisphaerica | exon |
| TCONS_00012858-exon-sc0000156-1575043694:435107..436011 | TCONS_00012858-exon-sc0000156-1575043694:435107..436011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:435107..436011 . |
Blast
The following BLAST results are available for this feature:
|
