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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012834 ID=TCONS_00012834|Name=TCONS_00012834|organism=Clytia hemisphaerica|type=transcript|length=1510bpRun BLAST on NCBI protein sequence of TCONS_00012834-protein >TCONS_00012834-protein ID=TCONS_00012834-protein|Name=TCONS_00012834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp MLYCYNKGCGKEFNENENCQESCQHHPGAPVFHDAYKGWSCCKKRSTDFTRun BLAST on NCBI transcript from alignment at sc0000156:309945..335526- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012834 ID=TCONS_00012834|Name=TCONS_00012834|organism=Clytia hemisphaerica|type=transcript|length=25582bp|location=Sequence derived from alignment at sc0000156:309945..335526- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:309945..335526- >TCONS_00012834 ID=TCONS_00012834|Name=TCONS_00012834|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0000156:309945..335526- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012834 vs. Swiss-Prot (Human)
Match: CHRD1 (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.340e-42 Identity = 82/187 (43.85%), Postives = 113/187 (60.43%), Query Frame = 1
Query: 91 LYCYNKGCGKEFNENENCQESCQHHPGAPVFHDAYKGWSCCKKRSTDFTEFLNIPGCSKGFHNXXXXXXXXXXXXXTPDISEVITDGLPK----LMKQKDPDTVLERPSDGTPSIKLNFNISQSLKTALQKLKEKLKQNSGEQDDNDDSIKVGAPCKHSGCEMKFLGEDRTHGECTYHPGYPVFHEG 639
L CYN+GCG+ F+ N ++C +HPG PVFHDA KGWSCCK+R+TDF++FL+I GC+KG HN EKP P K T + E + + PK +++ P ++RPS P L IS SLK AL KLK ++++++D IK+G CK+ GC + G + C YH G P+FHEG
Sbjct: 3 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPPEPVKPEVKTTEKKE-LCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEG 188 HSP 2 Score: 96.2857 bits (238), Expect = 8.484e-22 Identity = 57/132 (43.18%), Postives = 73/132 (55.30%), Query Frame = 3
Query: 813 KFWTCCNKRTSDFNEFLKQSGCSVGTCVWMKPSEIAEKKSVCRYDWHQTSKNVIISIYAXXXXXXXXXXXXNQTSMKASVAFNGGVNVFDLEVNLNGVIVPEKSNVEYLGTKCEIKLIKRDQFSWPKLEFVA 1208
K+W+CC ++TSDFN FL Q GC+ G +W K + +K CR+DWHQT V IS+YAK PE VE N T + + F G FD V L GVI ++S V TK EI + K + W LE A
Sbjct: 190 KYWSCCRRKTSDFNTFLAQEGCTKGKHMWTK-KDAGKKVVPCRHDWHQTGGEVTISVYAKNSLPELSRVEANSTLLNVHIVFE-GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPA 319 The following BLAST results are available for this feature:
BLAST of TCONS_00012834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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