TCONS_00012816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012816
Unique NameTCONS_00012816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012816 ID=TCONS_00012816|Name=TCONS_00012816|organism=Clytia hemisphaerica|type=transcript|length=2516bp
ACGCAAGCAAAGAGAACGGGAAAGAGAAATCCGTGAAAGGCAGGAGCGAG
AAAGGCGCCAACGTGAGAGAGAGGATAGAGAAAGGGAACGTAGAGATAGG
GAACGCAGAGAACGTGACCGACAACGCCGTCGACGTTCTTCCGAGCCTGA
CCGAGTGGACCGCAACGCGGAAAGACGTAAAATCATGGAAGAAGTTGACC
GTCGAATGAAGAATAGTTCAGGCTCCGAAGCTGCCAATTCTCCTCTTCGA
GAAAACCCTGACGAAAGCAGTGATTCTGAAATTGAACGTGTCGAACGGGA
ACAAGAACGCCGCAAACAACTTGAACGTGAAAGACGTGAACAGAGACGTA
AGAAATCAGAGGAACGTGAAACAAGACGTAACGAACGTCGTCGTAAATCG
CCGTCGGTTTCCGCAGAAGAGATGGATCAGGAATCAGATGAGGAAGAGGA
AAAAGAGCAACGTTCAAGACGCAAAGTATTACCGCCCAAAAAGAAAAGAT
CACCATCTTTCTCAGAAGATGACAAGAAGAAACGCGCACAAACTTCAGAC
GAAGACCTCTTAGAACGTGAAGACAGAGATGTCGATAAGAAACGCCGCCA
AAGCCGACAACGTAAACGTGATACGTCATCCGATTTTTCCGATTTAAATA
AACAGAAGAAATCGGGTTCACCCTCTCCACGGCGTAAACAGAAGAAACAG
AGATCGGAGGATGATGAATCGGAAGAAGAGAGACGTTCCACGTCGAAAGG
ACGGAAAACGCGAAAAGAGGTTTCACCGGAGATTTCTGAAAATGAGGATG
AAGAAGATGAGACAACGACGAGGAAAGTTGTTGTCAAAAAACGATCACCC
TCCCCATCGCTATCCCCTGAAAAATCACCTTCCCCAAAACCATCATCACG
GCGTAAACAACGTAGTCCGTCACCGGCTGTTCGACGTAAGAGAAGTCCTA
CGCCCGACAACGATccagaagaagatgaaaaagaggttgaagaagaagaa
gaagaaccgAGCGAATCGGAAGCGGAGAGCTCTCGAAGTAGTCGGAAGAA
ACATCGAAGTCACAAAGAGTCGAGAAAAGAAAGGAAACATCACAAGAAAC
ACAAATCaaggaaatccaaaaaatccaagaaaagCAGACGACGTTCCACA
TCATCAGAAGAGTCGAGCGCCGAAGAACAATCCAATAGTGAGGATGAACT
TCGTGAAAGAGCATTGAAAAGCATGAGTGGAAAGAAAAGTCGTGGTTCAT
CTGATGAAAGCGATTAAAGATGGAGAAATATTTCAACTCTCCGCCTAAAA
TGATCGTTTgtgataatgatgatgatgatagaTTAAACAGTTGTCACGCG
CGACCTGTCACATGAACGGATTGCTCGAGATTGATCAATTTGATATGTTG
TGTATGGATAGACAGTGAGATTTTTGTGATAAATGGTATGGTGTGATTTC
TTGACGAAAAGCACGCAACAGACGTCTCTTAAAGAAAGGCTCCATCAGGT
CATCTGTTGTCGAAATGATTTTGCAATGTTCTCTCAGATATTCACTCCCA
AAAAAAGTCGTACACTTCTCTTACAAGAGGGGGATGTAATAGAGTGCTTC
TCAAGTTGGATGACACCTAATCGCAGGGGATTTAACCTAGCTGATTTTTT
TAGAAAGGGGTCAAGGTTTCTGTTCTTTTAGCATTATGAGAATACTGCAA
ACTGGAGGGCGTTTCCACCAATGACCTTTGTTCATCAATAACGGACAGAT
AAGGAAGGAAGGGGAGATGCTGTTTCCCTTTTATCATGAACGATTTTCTA
TTATGGTTTGGTTTGACTTATCTGATTACTCTACTCacgaaacaaaaaca
atttggGGATCGGTTCAAAGGAACAAGCCAGTTTGGTGAAATAACAATTT
AATTAAtatttcttgaaaacttttcatactttttttctttacagtacaaa
acttgtttttaatagTTTAAATGTTTAGTAGATACATATCATGAGAATTT
TTCATAGCTTAGAAGACTTAGCCTTGTTTTATTAtcattatatatatttt
tctcctatgAATAGCTCTTAGTAGTCttgttatctttttcttttctctcc
cagaaaaaaaaaccttcAGAAAAGCAAAGTAATTTTTATCAgtgcttatt
aatagtaatgGCACTATGCGAAAAGAACCCTCGTTCCTTAGTGAGTTTTG
TGTCTGCCATTCTGatttaattttcaaacattttgttCGTCTTGCTAGGC
Tgtaaactgaaagattttacaagaaaattttctcaatatattttatttat
ttttttgaaaaagtttaatttttaaagccgTGTTTTTCTTACGTCATTTG
TTTTACAATTTTCTTCACAACAGATTGGCTTTGATCAGGTCAAGTCGCTT
TTGAGTGACATGTTTTATTTCGCTTCTCAgcttgttttaaatagttttta
aagtgaaattttATTATGGAAAAATTCCAGAAGTAATAAATTCAGCATTA
TTGTTTCAACGAACAT
Run BLAST on NCBI

transcript from alignment at sc0000156:218981..224015-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012816 ID=TCONS_00012816|Name=TCONS_00012816|organism=Clytia hemisphaerica|type=transcript|length=5035bp|location=Sequence derived from alignment at sc0000156:218981..224015- (Clytia hemisphaerica)
ACGCAAGCAAAGAGAACGGGAAAGAGAAATCCGTGAAAGGCAGGAGCGAG
AAAGGCGCCAACGTGAGAGAGAGGATAGAGAAAGGGAACGTAGAGATAGG
GAACGCAGAGAACGTGACCGACAACGCCGTCGACGTTCTTCCGAGCCTGA
CCGAGTGGACCGCAACGCGGAAAGACGTAAAATCATGGAAGAAGTTGACC
GTCGAATGAAGAATAGTTCAGGCTCCGAAGCTGCCAATTCTCCTCTTCGA
GAAAACCCTGACGAAAGCAGTGATTCTGAAATTGAACGTGTCGAACGGGA
ACAAGAACGCCGCAAACAACTTGAACGTGAAAGACGTGAACAGAGACGTA
AGAAATCAGAGGAACGTGAAACAAGACGTAACGAACGTCGTCGTAAATCG
CCGTCGGTTTCCGCAGAAGAGATGGATCAGGAATCAGATGAGGAAGAGGA
AAAAGAGCAACGTTCAAGACGCAAAGTATTACCGCCCAAAAAGAAAAGAT
CACCATCTTTCTCAGGTAAATAAGAAAACAATTGTTTAATATTCAGACCT
AGACATGAAGGGAAATGAATTTGTTGTTAAATATTGGGTGTTTGGTAAGG
TATTGTTGTTTGAGAAAGGCACGCAAATAGTAAGATAACTCTTTGCTTCT
AGCATATTCAATTGTTTGTGAGTGATCAAATAAGTCAAATAAGATCGTTA
TCATGTTTCTATTACACCTAACAGAAGATGACAAGAAGAAACGCGCACAA
ACTTCAGACGAAGACCTCTTAGAACGTGAAGACAGAGATGTCGATAAGAA
ACGCCGCCAAAGCCGACAACGTAAACGTGATACGTCATCCGATTTTTCCG
ATTTAAATAAACAGAAGAAATCGGGTTCACCCTCTCCACGGCGTAAACAG
AAGATACAGAGAGCGGAGGATNGATAAACGGAAGAAATCGGGTTCGCCCT
CACCAAGGCGTAAACAGAAGAAACAGAGATCGGAGGATGATGAATCGGAA
GAAGAGAGACGTTCCACGTCGAAAGGACGGAAAACGCGAAAAGAGGTTTC
ACCGGAGATTTCTGAAAATGAGGATGAAGAAGATGAGACAACGACGAGGA
AAGTTGTTGTCAAAAAACGATCACCCTCCCCATCGCTATCCCCTGAAAAG
TATGTTTTTAGTCCTCCAACCAGTCTTTATATTTGTATTTAGAATTTCCT
TTTTCTTCTCGTTCAAGGTTAAAAAAATCCTAAATGAGCCAAAACCTTCG
ATCGAAAAACATCCCTGGGTAACTCGTATAACTCCCTACTCCGTCAGGTC
CAAACAGCCCTTCTTCACAATCGATACTTTTACTTACATTTTAGTGATGT
GCAGAAAGACGTTCACATGTTAAAGCGAACTTGATTGCTTACGGATCGCC
TTTCAGTTCAATTTCTTTCATGGTATAAAAATCTGAGATTATTCCTTTCA
ATATTAGATCACCTTCCCCAAAACCATCATCACGGCGTAAACAACGTAGT
CCGTCACCGGCTGTTCGACGTAAGAGAAGTCCTACGCCCGACAACGATCC
AGAAGAAGATGAAAAAGAGGTCTGTTGCTTTAATTTATTTTTGAAAACTA
ACCGTACATAGTTTTATAAAAAGTAAAATCCACATGATTTAGGCGAAATT
TTATGACTTGTATACCTATTCAACCATCTTGAAAATTGAATATCTATTGA
TTAAACAGAAATTTCATCTTATTTTGATTATTGTAGTTTAGATAATGAGA
AAATTTGAAAATTTGTCTGCTTGTTTTATGTGACACGCTGTATGCAAAGC
TTAAAGCTAATTTTTATTACCGAAACAAGCTGAGATCTGTAGTTTACTGC
GAGTCCGCCAGTTTCAACGACGCTGCCATTCAATGACCAATATATATTAA
TACAGTGTTCAAAGTTCTTCCATCTCATTCTCAATGAAGTATCTAAAGAG
ACTTTTCCGTCTCAAAATTCCACGTAATTCACCAAAATTTCAAGAATATG
TCCTAATTTTTTCTTTTTAAAATCCATTTTCCGTCTTGCTTCCGCCTTGC
TTCCGCCTTGCTTTGACCACGGTATTAATAATAATAGTACTCACAGAATG
AAAATACCCAAACATGGTTTTGTAACAATGGGGTGTTCAACCTATCCGCC
CTTCTTATTATGTAGTCTAAATTTTTCTGTCTGGCTCTTCTCTTTAGGTT
GAAGAAGAAGAAGAAGAACCGAGCGAATCGGAAGCGGAGAGCTCTCGAAG
TAGTCGGAAGAAACATCGAAGTCACAAAGAGTCGAGAAAAGAAAGGAAAC
ATCACAAGAAACACAAATCAAGGAAATCCAAAAAATCCAAGAAAAGCAGA
CGACGTTCCGTAAGTGTTGCTAACGGGTCTAAGATATTTTTGCGAAAACC
CTGCTTACTAATAAACACCAACCAATCAAATATTTTATTATAATGATCAT
GTTAAAATTATGATCTGAAAATATATCTTTATTGATGTGCAAGCGAAACC
GTTAACCGGTATTTGCGACGACGGGAACCGTCTAGTCTATTACTATCGTT
TTCTAAGTTTTTATCTAGCCCCTTGAGAATTGTAAGAATTTTCGTTTGAC
TTTTGGTTTCAGACTTTCGACTTAAAAATTCTTTAACGTTTGCTATTTCA
CTTTTTACTGAAAACATGCATACATGATTTAACATTTCCTTCAACGAGAC
TTCTCTTTTAAATGACAAAAAGCATTTTAAGTGTTTATCATATTGAGAGG
AATTCGAAAGTCTGGTTTAAAATATTTCGGTGAGGTATAATCTCAAGGAT
ATTTGGTGTGTTTTTCTGTGGTTGCGTTCTTACTTGGTTCTTAACATGTT
TTCATGTTTTCTAAAATTTCATTACGACTGCTGTCAATCATTAGATAACA
GTCATAACACTTTTCTGAGGCTGGCTTATTTGTTCTAAGGCAAATAATTT
TAGACACTATCGGAGAATTTGACGCTCAAGAAACATTCATTTTTTAAGTG
AGCATTCCTTTTAAAAGACTAGCTATTACGAGGCTTAAGATCATGATATG
GTCAAGTTCAAGGAATTATTACATGGCAATCCATGTTTTGTCAACTAATA
AAAACGCAGTGGCAATTGTCAGTCTTAACTCATTATGATTTAATCATTCA
TCTGATAAAGTGATCACAAATGTTCGAGATCTTGTTCAAAGGTTTATTTA
AATTGAATTGTATGTACTTAATCTCGTTTGAGAGTTTATGTGATTTCAAC
CCCTGAATGAATCGTCACATACGCTAAAGTTTTTACCTGTATAATCTCTG
AGTTCAGGGCTTCGTCCATCCGATATCAATAAGAATGGTCAGCTTCCTTC
CATTGATTCCATAAGTTTAAACTTCTTGACTTGGCCTGCCATGTGGTGAT
GTAAACTAGTGTTTGTTTACTGATAACAGAGACGCTCGTCTCATTCTGTT
TCTGTCTATACATTTCTACTTAGTTGAGGTATATGAGGCCTACCCATCTT
TTAATTTTACCTAGACTAGATTCTTGCTGAATTCATTGAAGTATCTAGAC
GCCATCCAATCTTTCAAAAAGTTGGAAGTGGATCCCGGGCAAAGCTTTAC
CAAAATAAAATGCTACTTTAAGCTTTTCAAAAATAATTTTATACTCTTTC
TTCTCTTTTTTCACAGACATCATCAGAAGAGTCGAGCGCCGAAGAACAAT
CCAATAGTGAGGATGAACTTCGTGAAAGAGCATTGAAAAGCATGAGTGGA
AAGAAAAGTCGTGGTTCATCTGATGAAAGCGATTAAAGATGGAGAAATAT
TTCAACTCTCCGCCTAAAATGATCGTTTGTGATAATGATGATGATGATAG
ATTAAACAGTTGTCACGCGCGACCTGTCACATGAACGGATTGCTCGAGAT
TGATCAATTTGATATGTTGTGTATGGATAGACAGTGAGATTTTTGTGATA
AATGGTATGGTGTGATTTCTTGACGAAAAGCACGCAACAGACGTCTCTTA
AAGAAAGGCTCCATCAGGTCATCTGTTGTCGAAATGATTTTGCAATGTTC
TCTCAGATATTCACTCCCAAAAAAAGTCGTACACTTCTCTTACAAGAGGG
GGATGTAATAGAGTGCTTCTCAAGTTGGATGACACCTAATCGCAGGGGAT
TTAACCTAGCTGATTTTTTTAGAAAGGGGTCAAGGTTTCTGTTCTTTTAG
CATTATGAGAATACTGCAAACTGGAGGGCGTTTCCACCAATGACCTTTGT
TCATCAATAACGGACAGATAAGGAAGGAAGGGGAGATGCTGTTTCCCTTT
TATCATGAACGATTTTCTATTATGGTTTGGTTTGACTTATCTGATTACTC
TACTCACGAAACAAAAACAATTTGGGGATCGGTTCAAAGGAACAAGCCAG
TTTGGTGAAATAACAATTTAATTAATATTTCTTGAAAACTTTTCATACTT
TTTTTCTTTACAGTACAAAACTTGTTTTTAATAGTTTAAATGTTTAGTAG
ATACATATCATGAGAATTTTTCATAGCTTAGAAGACTTAGCCTTGTTTTA
TTATCATTATATATATTTTTCTCCTATGAATAGCTCTTAGTAGTCTTGTT
ATCTTTTTCTTTTCTCTCCCAGAAAAAAAAACCTTCAGAAAAGCAAAGTA
ATTTTTATCAGTGCTTATTAATAGTAATGGCACTATGCGAAAAGAACCCT
CGTTCCTTAGTGAGTTTTGTGTCTGCCATTCTGATTTAATTTTCAAACAT
TTTGTTCGTCTTGCTAGGCTGTAAACTGAAAGATTTTACAAGAAAATTTT
CTCAATATATTTTATTTATTTTTTTGAAAAAGTTTAATTTTTAAAGCCGT
GTTTTTCTTACGTCATTTGTTTTACAATTTTCTTCACAACAGATTGGCTT
TGATCAGGTCAAGTCGCTTTTGAGTGACATGTTTTATTTCGCTTCTCAGC
TTGTTTTAAATAGTTTTTAAAGTGAAATTTTATTATGGAAAAATTCCAGA
AGTAATAAATTCAGCATTATTGTTTCAACGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007195XLOC_007195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012816-exon-sc0000156-1575043694:223501..224015TCONS_00012816-exon-sc0000156-1575043694:223501..224015Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1575043694:223126..223291TCONS_00012816-exon-sc0000156-1575043694:223126..223291Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1575043694:222867..223058TCONS_00012816-exon-sc0000156-1575043694:222867..223058Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1575043694:222447..222558TCONS_00012816-exon-sc0000156-1575043694:222447..222558Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1575043694:221657..221818TCONS_00012816-exon-sc0000156-1575043694:221657..221818Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1575043694:218981..220349TCONS_00012816-exon-sc0000156-1575043694:218981..220349Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1510915933:223501..224015TCONS_00012816-exon-sc0000156-1510915933:223501..224015Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1510915933:223126..223291TCONS_00012816-exon-sc0000156-1510915933:223126..223291Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1510915933:222867..223058TCONS_00012816-exon-sc0000156-1510915933:222867..223058Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1510915933:222447..222558TCONS_00012816-exon-sc0000156-1510915933:222447..222558Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1510915933:221657..221818TCONS_00012816-exon-sc0000156-1510915933:221657..221818Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1510915933:218981..220349TCONS_00012816-exon-sc0000156-1510915933:218981..220349Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1491911889:223501..224015TCONS_00012816-exon-sc0000156-1491911889:223501..224015Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1491911889:223126..223291TCONS_00012816-exon-sc0000156-1491911889:223126..223291Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1491911889:222867..223058TCONS_00012816-exon-sc0000156-1491911889:222867..223058Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1491911889:222447..222558TCONS_00012816-exon-sc0000156-1491911889:222447..222558Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1491911889:221657..221818TCONS_00012816-exon-sc0000156-1491911889:221657..221818Clytia hemisphaericaexon
TCONS_00012816-exon-sc0000156-1491911889:218981..220349TCONS_00012816-exon-sc0000156-1491911889:218981..220349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:218981..224015 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.34706	2.25347	7.61488	10.7016	46.2856	37.1768	22.8281	22.7152	13.947	18.532	17.218	13.9882	14.1888	16.7164	11.9712	14.0846	15.5097	14.1272	9.24765	7.72008	12.1857	14.3672	6.68835	7.49533	25.6791	23.3961	16.5978	15.2493	5.70685	6.00307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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