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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012806 ID=TCONS_00012806|Name=TCONS_00012806|organism=Clytia hemisphaerica|type=transcript|length=835bp
GCTTGTGGCATCCTTTATATCCCATTCTACCTCAAGACGAACATATTTTA
CAGAATCTTGATACCTTAGCGATTTCAAAAGAACACCAGCAGTCTTTGAA
AAGAATATATGGATTTATTGAAATCGATCGTCCTTCAAGATACACACTAA
GTTTTCTATTTGATGGAGCTTTAGAAGTGATTTTCTTGTTCGCTGGTTTT
TCAATCCCCTCCAAATGGGATCAACATTTCAAAGAGATTTTTCATTTCGA
ACAAAACAACAAGAAAGATTTCTTTTCATCATCTGAACATGAAGTTTTCT
TAAAGCGAGGCTATTATGCTGTTGAGATTGTGTCATTGTCAAATGTCAAA
GTATCGTGGAAAAACAAACATGATTCACTGTCAATATTAAAGTCAACTGT
TATCTTTCACCAAAAGACAACTGAAAACAGCTATTTTTCATACCTTACCT
CCAAGCATTTTTTCAAAGACCACTATCCATTGAAAGATCTCACAGAAGAA
AAGAAACTGTCTTTTTACAATTATTCACAGCTTGAAAAATATACTCCAAA
TCAAATTAAAGCCTTCTCTATTTTGCCTACTTTACATGTTCTGACCGATG
TCTTCAGcaagaccaaagaaactaacGTCACTTTGGTTTTATTAGATAAC
GAAAGCTCTGATGGAAACTATGAGCAATTGCTGGAATCCACAAAAGATGT
TCCTTCAAAGTATATCCTAACCAAAAACAAGAAATTCAGCAAAGTGAAGA
TCTTGAACGAAGGATTGAAGGCGGTCCCGAAAGATGGAATCGCCATGATT
CTAgatcttcacctccaaatccCTTTGGATTTCTT Run BLAST on NCBI protein sequence of TCONS_00012806-protein >TCONS_00012806-protein ID=TCONS_00012806-protein|Name=TCONS_00012806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
LWHPLYPILPQDEHILQNLDTLAISKEHQQSLKRIYGFIEIDRPSRYTLS
FLFDGALEVIFLFAGFSIPSKWDQHFKEIFHFEQNNKKDFFSSSEHEVFL
KRGYYAVEIVSLSNVKVSWKNKHDSLSILKSTVIFHQKTTENSYFSYLTS
KHFFKDHYPLKDLTEEKKLSFYNYSQLEKYTPNQIKAFSILPTLHVLTDV
FSKTKETNVTLVLLDNESSDGNYEQLLESTKDVPSKYILTKNKKFSKVKI
LNEGLKAVPKDGIAMILDLHLQIPLDF Run BLAST on NCBI transcript from alignment at sc0000156:500990..502505+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012806 ID=TCONS_00012806|Name=TCONS_00012806|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at sc0000156:500990..502505+ (Clytia hemisphaerica)
GCTTGTGGCATCCTTTATATCCCATTCTACCTCAAGACGAACATATTTTA
CAGAATCTTGATACCTTAGCGATTTCAAAAGAACACCAGCAGTCTTTGAA
AAGAATATATGGATTTATTGAAATCGATCGTCCTTCAAGATACACACTAA
GTTTTCTATTTGATGGAGCTTTAGAAGTGATTTTCTTGTTCGCTGGTTTT
TCAATCCCCTCCAAATGGGATCAACATTTCAAAGAGATTTTTCATTTCGA
ACAAAACAACAAGAAAGATTTCTTTTCATCATCTGAACATGAAGTTTTCT
TAAAGCGAGGCTATTATGCTGTTGAGATTGTGTCATTGTCAAATGTCAAA
GTATCGTGGAAAAACAAACATGATTCACTGTCAATATTAAAGTCAACTGT
TATCTTTCACCAAAAGACAACTGAAAACAGCTATTTTTCATACCTTACCT
CCAAGCATTTTTTCAAAGACCACTATCCATTGAAAGATCTCACAGAAGAA
AAGAAACTGTCTTTTTACAATTATTCACAGCTTGAAAAATATACTCCAAA
TCAAATTAAAGCCTTCTCTATTTTGCCTACTTTACATGTTCTGACCGATG
TCTTCAGcaagaccaaagaaactaacgtaggttttaattttgtttaatgT
AAAATTATTGCCTTCTCTGTCATCTCAGTAGAGCTTATCTGGTGCTAAAT
TCTATTATACTGTAATTTGagtataaaaaaattgttttcttttgaaagga
GAAAAAGTGCGGTATTTTGATTCGTGTTTATTGTTTAATAATATTGAAGG
ATTTTAGGGGAACACACAGAGTGCCACTTTTGATAGTAATTGTGAACTAC
AATCtgcgccgaaatatttggcacataAAAGGGGAActccctcaaaactt
taaaactgcaagtgatttttaagtgctttgaagtacagttcggaagtaga
gttttaactctgagttttaacattagactcaggaccttaggatctcagga
tctaaaagctcaaaaatgttccaataaggctgagaatatagcctggaagc
cacttaatcaaaccgaaaaatccaatgaagcaaactggaagtactgaaac
tgcaattctcgcacgacctttaaattctgaacaacgttaaaatacccaag
attgccaatatatttcggcgctgattgtagtgtttttttctattttatta
aagttcgaaaatcttgtACAAATCTTCCATGGCAAAGGAAGGAAAGGCGT
AGAGGCAAAACTTGGGAGAATATATCTCAATCAAGTTTTTCGAATTCTGC
GTTTCAGGTCACTTTGGTTTTATTAGATAACGAAAGCTCTGATGGAAACT
ATGAGCAATTGCTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCTA
ACCAAAAACAAGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGAA
GGCGGTCCCGAAAGATGGAATCGCCATGATTCTAgatcttcacctccaaa
tccCTTTGGATTTCTT Coding sequence (CDS) from alignment at sc0000156:500990..502505+ >TCONS_00012806 ID=TCONS_00012806|Name=TCONS_00012806|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at sc0000156:500990..502505+ (Clytia hemisphaerica)
TTGTGGCATCCTTTATATCCCATTCTACCTCAAGACGAACATATTTTACA
GAATCTTGATACCTTAGCGATTTCAAAAGAACACCAGCAGTCTTTGAAAA
GAATATATGGATTTATTGAAATCGATCGTCCTTCAAGATACACACTAAGT
TTTCTATTTGATGGAGCTTTAGAAGTGATTTTCTTGTTCGCTGGTTTTTC
AATCCCCTCCAAATGGGATCAACATTTCAAAGAGATTTTTCATTTCGAAC
AAAACAACAAGAAAGATTTCTTTTCATCATCTGAACATGAAGTTTTCTTA
AAGCGAGGCTATTATGCTGTTGAGATTGTGTCATTGTCAAATGTCAAAGT
ATCGTGGAAAAACAAACATGATTCACTGTCAATATTAAAGTCAACTGTTA
TCTTTCACCAAAAGACAACTGAAAACAGCTATTTTTCATACCTTACCTCC
AAGCATTTTTTCAAAGACCACTATCCATTGAAAGATCTCACAGAAGAAAA
GAAACTGTCTTTTTACAATTATTCACAGCTTGAAAAATATACTCCAAATC
AAATTAAAGCCTTCTCTATTTTGCCTACTTTACATGTTCTGACCGATGTC
TTCAGcaagaccaaagaaactaacGTCACTTTGGTTTTATTAGATAACGA
AAGCTCTGATGGAAACTATGAGCAATTGCTGGAATCCACAAAAGATGTTC
CTTCAAAGTATATCCTAACCAAAAACAAGAAATTCAGCAAAGTGAAGATC
TTGAACGAAGGATTGAAGGCGGTCCCGAAAGATGGAATCGCCATGATTCT
AgatcttcacctccaaatccCTTTGGATTTCTTGTGGCATCCTTTATATC
CCATTCTACCTCAAGACGAACATATTTTACAGAATCTTGATACCTTAGCG
ATTTCAAAAGAACACCAGCAGTCTTTGAAAAGAATATATGGATTTATTGA
AATCGATCGTCCTTCAAGATACACACTAAGTTTTCTATTTGATGGAGCTT
TAGAAGTGATTTTCTTGTTCGCTGGTTTTTCAATCCCCTCCAAATGGGAT
CAACATTTCAAAGAGATTTTTCATTTCGAACAAAACAACAAGAAAGATTT
CTTTTCATCATCTGAACATGAAGTTTTCTTAAAGCGAGGCTATTATGCTG
TTGAGATTGTGTCATTGTCAAATGTCAAAGTATCGTGGAAAAACAAACAT
GATTCACTGTCAATATTAAAGTCAACTGTTATCTTTCACCAAAAGACAAC
TGAAAACAGCTATTTTTCATACCTTACCTCCAAGCATTTTTTCAAAGACC
ACTATCCATTGAAAGATCTCACAGAAGAAAAGAAACTGTCTTTTTACAAT
TATTCACAGCTTGAAAAATATACTCCAAATCAAATTAAAGCCTTCTCTAT
TTTGCCTACTTTACATGTTCTGACCGATGTCTTCAGcaagaccaaagaaa
ctaacGTCACTTTGGTTTTATTAGATAACGAAAGCTCTGATGGAAACTAT
GAGCAATTGCTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCTAAC
CAAAAACAAGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGAAGG
CGGTCCCGAAAGATGGAATCGCCATGATTCTAgatcttcacctccaaatc
cCTTTGGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012806-exon-sc0000156-1491911889:500990..501615 | TCONS_00012806-exon-sc0000156-1491911889:500990..501615 | Clytia hemisphaerica | exon |
| TCONS_00012806-exon-sc0000156-1510915933:500990..501615 | TCONS_00012806-exon-sc0000156-1510915933:500990..501615 | Clytia hemisphaerica | exon |
| TCONS_00012806-exon-sc0000156-1575043694:500990..501615 | TCONS_00012806-exon-sc0000156-1575043694:500990..501615 | Clytia hemisphaerica | exon |
| TCONS_00012806-exon-sc0000156-1491911889:502297..502505 | TCONS_00012806-exon-sc0000156-1491911889:502297..502505 | Clytia hemisphaerica | exon |
| TCONS_00012806-exon-sc0000156-1510915933:502297..502505 | TCONS_00012806-exon-sc0000156-1510915933:502297..502505 | Clytia hemisphaerica | exon |
| TCONS_00012806-exon-sc0000156-1575043694:502297..502505 | TCONS_00012806-exon-sc0000156-1575043694:502297..502505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:500990..502505 + |
Blast
The following BLAST results are available for this feature:
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