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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012780 ID=TCONS_00012780|Name=TCONS_00012780|organism=Clytia hemisphaerica|type=transcript|length=1513bp
GTTcttattagtttgttttttaaattctctattaataatggagtcgttga
tttcttatacattttgaaatttcttcgctttgcgaaaacagaacgctcgt
tccgcaagcccttttatgttgatttcaTTATATTccttattttgaaaaac
tatcACCGTTTGTTGTTCCTTGGTTGGCTCTAGCTTGCTTTTTTTCCTCA
GGTGAATTCAAAGAAAGATAGTGCAGAATACAAAACAAAAGTCGGTACGA
AAACCGCCACGTCATCCAACAAAGCCGACACATCGTCCAATAAACCGACA
AACTTATTACAAAGTGAAGATGAAGATAAAGAgacgaaacaaaaacaaac
cgaCGGAAAATATCGATTCCTTTTCTCAGGATTAACAGTTCAGGAGAAGA
TTGAATATGGGGCGGTGGTTGAGCAGTTGGGCGGTGAATTTCTTGATGTT
CAATATTTTTCCACGCAGTGCTCACACGTTATCGTCAACGCGCCCACAAG
GAGTGAGAAATATCTAGCAGCCGTTTCCAGTGGAAAATGGATCTTGCATA
AATCCTACTTGGAAGCTAGCCGGGAAGCTGGTCGCTTTGTGGACGAGGAA
GATCATGAGTGGGGTGCTGACCTAGAATTACAACAATTCGAATCGTCTGG
GAAACGTTTACGAATGGAATTAATCGAAAAACGTCTTGAAGATCCgaaat
tcaacattttcaaaggaTGGAACGTGTTGATGTGTATCGAAACATCCAAA
GTGCCGGGCGTTAAACGAATTGTCGAAGCGGGCGGAGGGTGTATATTGGC
CACAAGACCACcctttgaaaataaagaaggtGCAACACATCTTTTTCTGA
CGGaTCCACGACTTGCAGAGAAATATGAGTTGAATTGCCAACAATTTCAA
GACGATGGATTGTGGGTTCTTCGCCTCGAATATATCTCTGATTTCCTCAC
CATACACCCGAAACCCTCTGCGCTCAACTACGTCATCGCCGAACTGAAAA
AAGACGACGAATCTACTACCAAAAGAACGTCTGTGGCGGCAGTTGCCGGT
AAACGTAAAGCCACCCGTGTCGCTACACCACAGAAAGATAAACGTTTGCG
AAGAGAGACTTCAAATAGATAGTTTCTATCTAATaagttatgtttttttt
tttgctttaaagtTGATAAAGAAGACTCCCTCTAAATCTTCTTACGGTAC
TCTTAGGTTAGGATCAAAATCTTCTTTCAACTTTAGTTCAGTAATCAGCG
ACTTCTTCATAATAAGTCGTTGATGTATTACACATCCTGAAGGTAGcact
tttgtgaaagttttgagCCTTACTGGGGGATGATTGAcaatttacattta
aaaatgctctaaaaatagaATTCTGAGGTTCCAATTATTTGGCAATgtat
attctcaattttttggcCAATGTTATTAAGAATATTCTCATAGAGAGAGa
acattcttatgaaaaatcgtGTAATTCGACTTTCATGTaaccaaaaatat
tcttcgaaCCAGA Run BLAST on NCBI transcript from alignment at sc0000156:75442..81503+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012780 ID=TCONS_00012780|Name=TCONS_00012780|organism=Clytia hemisphaerica|type=transcript|length=6062bp|location=Sequence derived from alignment at sc0000156:75442..81503+ (Clytia hemisphaerica)
GTTcttattagtttgttttttaaattctctattaataatggagtcgttga
tttcttatacattttgaaatttcttcgctttgcgaaaacagaacgctcgt
tccgcaagcccttttatgttgatttcaTTATATTccttattttgaaaaac
tatcACCGTTTGTTGTTCCTTGGTTGGCTCTAGCTTGCTTTTTTTCCTCA
GGTGAATTCAAAGAAAGATAGTGCAGAATACAAAACAAAAGTCGGTACGA
AAACCGCCACGTCATCCAACAAAGCCGACACATCGTCCAATAAACCGACA
AACTTATTACAAAGTGAAGATGAAGATAAAGAgacgaaacaaaaacaaac
cgaCGGAAAATATCGATTCCTTTTCTCAGGATTAACAGTTCAGGAGAAGA
TTGAATATGGGGCGGTGGTTGAGCAGTTGGGCGGTGAATTTCTTGATGTT
CAATATTTTTCCACGCAGTGCTCACACGTTATCGTCAACGCGCCCACAAG
GTAAAAGAAAGAGTATTTTTATTCGAGGTTTcgtttgaaaaagtaaaaca
gaAACGATGATggaaatgaaaatctaaaataatcTTTACTATGCTTAATT
GTTAATCCCCGCCCTCATAGTGATCAAAATTGCTAGTTAGGCTAGTCTGG
TAAAGGCTAGATTCAAGCTCTACCTTcactgttttcttcttttaaacTCG
GCTCATATCTTTGCAACAATAAATGAAATAGAAaggaaaaaccatcaaaa
aatggaaaagatGTCATTCCTTGAGAGAACTACAAATTTATTTACGTTTA
GGAGTGAGAAATATCTAGCAGCCGTTTCCAGTGGAAAATGGATCTTGCAT
AAATCCTACTTGGAAGCTAGCCGGGAAGCTGGTCGCTTTGTGGACGAGGA
AGATCATGAGTGGGGTGCTGACCTAGAATTACAACAATTCGAATCGTCTG
GGAAACGTTTACGAATGGAATTAATCGAAAAACGTCTTGAAGATCCgaaa
ttcaacattttcaaaggaTGGAACGTGTTGATGTGTATCGAAACATCCAA
AGTGCCGGGCGTTAAACGAATTGTCGAAGCGGGCGGAGGGTGTATATTGG
CCACAAGACCACcctttgaaaataaagaaggtGCAACACATCTTTTTCTG
ACGGGTAAGCTTTAAACTTCAACACTCTGGAATATCTTTTTGACGAGTAC
AAACCgctattctatcaaaatttttagcctgttttgtctccgctgcagat
gatattgagacagactctaatttttcaatttttgttttttaacaaTGTGT
ATAGTTTGAAGTACAATACCAATGCCCTGAAGTATCAGCTGTATCGTTTA
TGAATTTGTGTATAGAATTGCTAATTTAAtggaaatctttcaaaaaatct
ctccaaaGACCAATTTTTTCGTCCATATTTCAATTTCTGATGACATTTGC
ACTTAATTCAAGGGATAGCATTGCTGTATGATATCAAAAACTCAATTCTT
ACACGACATTAACATTTTATGTACCAGCGGATTTCAGCATTTTTGGGAAA
GTAATTCCTCTTTTTTACCATCTTTCAGTCTTTTTTCTTCAGTCATTTTT
CTCCCATCGCAACCACGATCCAAGATCAATTAATTAATGACTTCCTGTAA
TTTTCATTCGCTGAGTCTAATGATTCATTCATGTTACTTCAATTAAGGTT
TTCGtaatcaatgacgtcatcgatatCATAAATTAGTGATATTTGACTTA
TGATGCTAAGACGTTTTCATATCATACCATGCTTGTCGATAAAAAGATCC
CATTATGTTGATTGAAACCTTTGATCTTTAGCACGTGTTgttattgggct
attccattttagatccatacaggggggggcggacaaacatttccaggggg
taatcagaggaagatttccagggggtaatcagAGGaggatttccaggggg
taatcagAAGAAGATTTCCAGATAAAAAGCTATTCTGAAACTTCCAGGAA
GTAAAATGCTGATTTGAGTCCACCCTGAATTTCAGGTTTGaataagaatt
tttccaagggatTTGCAAACTTTGTCTTTTCCCAAGGAGCATCtacattt
tgaagaattttagtTTGGTATGAAAAAGTTCGTCCACCCCAGTACCCCTG
TATGGAGATTAAATGGAACAGCTCATTGAGGGATGAGACATATATGATGC
TGCGCAAGCATTGTCGATTTGTGCATCCTTCGCTCATTAGTCGTTTTCAA
TAACTTCGTTTATTTTTCAGatgaactttttgagtttaaagcccaaagaT
GTTCACcgttgtttcactttttttgtaattacttaaagaatttgatgttt
tagaggcccaaatgttcttaacttgttctaaatACTTTGGCCAtcaagcc
ttatgctcttatatagttttttatctttgaaaaacATGTATGTCATTACT
TTTAAAACTCGTTATCACGTATGAATTTATTTGTTTAGAtcatcttcagt
tttttttacAGACACTATGAACTTTGTCTGTAtcagacccgatatctacg
gagATTTTGAAATCAATTCCGTACCCAGCTAAGTTACACTTTTATACGCG
AGGTACACTATGGtacatagcctggatatccaggctgtaaactatttcac
agtctagtttttgatattttatgttctggtttacagcctggtctccctag
agcgatttgcattctctttaagagaatgcagtccgcttgcttgcgctcac
ttcgctaaaaccgtaagggccaatctacacggcgtggagcaaaaataata
aattctaaAGCAAGTgaagtgaagatagggctttctgttacatgaaaaca
tgaaaaagaagaaaacagagccaagttcattttccaagaaaacatggttg
gtcatgataatgcatgcaaacttttttatggactttggtgtaatctttgg
atgttttaaatagttttagatcttgtgagactgctttttattaatttctg
ttttgctgccctgggttggctaggaaacatgggttttcactttcattctt
tagggagaccaagctctataattttagaactttgtatgttgaggtaaatt
ttgttttttctaaaattttgagcttggatatccaggctatctGGTACAGA
GCACTGAGTTCGGCCCATAATAATGATGCAAAAACCGCGCCGAATctgaa
aatagattttatttttgacatagtcattactctcgatgtatTGAGTTCCA
GTctcatcaacctttgcgtttatctcttttgcacgttaatcgcatcattt
aacaaaatatatataacaacttgcacgtatctttaattgagccacattga
attgtgggattgcaactcgtacaaatgtcaaaaaaagtgaaaagtaataa
ttatgacgttcgTGTTGCGGGGCGCTATTAATTCTGTCACGATCTTGAAT
TATACATCACTCAAATTTTCAACGTGATAAGCTTCTTACTTATATACTTA
ACTTTTGTCATTGACAAATAAGCTTAACCAATGACCCTGGATGTTGATTA
GAAATCCACAATTCGGTCTAACTGTTTTCGATTAATCCCATATATAAACC
TTTTATCGGTTTTTAATGACCCCTTATCtacaatttttctttcattctcT
CTGTTCACCACTTGGCTTGTATCAGATTTCATTAACCGCCGATCTACCCT
TTCctcttttaaccattttttataagattgtTGATGTACTTTGATTGATT
GTGAtgtaccttaagagaagaaattttggcgaatgagcccactcgccaat
tttggtgcaatttggcggaatttattttggcaatttaataaaatttctaa
atttggcgagaattaattttggcgaacaacccatttttgttcaatatttt
agctgaaaaaagagataaaaagggttttaggagaaatagagactaaACTG
AAAGAaacttaaatttggcgagaatttattttgCCGAATGACCTATAAAT
TTAAACCATTTTAAGAATGCAATCAACTATTTGGAAGAATCTGTTGTTCT
TACAAAACCTCTCTTAACCTCGAGTCAAGTGATGTGACGTCAAATACAGT
ATAAAAAAGCTCTGATTGAACCGGGGGTGAATTTGAAAGCGCATGTTTTT
TATACTTTCCTTCTTTCAATCATATTATCTTAATATTTCTCTATCACAAA
CAGCCTCTATTCCAAACTGAAACAGTTACTTTTCTCTTCTCGGATTTCAG
ATCtgattttgtttgtttacacgttttatttataaaaataaattacataa
gaacataagacttcgatggccaaaatattaagaacaagctacgaacattt
taaggcttcatggactctaaaacacgcaatttcttaggaaattgcacaaa
aatactcacaaaatggtgaaattaagaacattctaagaacattttaggcc
taaaactcaagaacatccgaaggcttcaagagttttggatgttcttataa
aaaaatgtgtagtttGTTTTGACTGCGAAATCCACGAATTAGACACTCGA
TGACGTTATAAACACTTTATTCTTTGTGTAACAGAAACTCCTAATCAGAT
TCAAAATGAACGGTTAAAGGTTGACTCTGCATCCAAACTCGCTGTCATTA
TAATTGATGGGCAATAGGTCATGCAAATGGGCCTTCTTAGAATCGATGTT
TTAACTGCCTAAAAAGCTGTCGAATGCACATGATAAGATATCCATTTTGT
TTAACCACATTCAGACATTTTTCGATCAAAAACAGATTTAACAAATAAAT
TTGTTCCATGTTGATAAAGTACAGACCGGATTGTATAGAGATTCGTCTCC
gctttttgtattttcttaggCTTCTGTCCATCCTCtaacgaaaaagtttc
ttacaGTACAGTATAGTATGTTATATCTAAAGAGGTCTGCGAATCAGATA
GTTATTTCTTGAACGGTCCCTAGACGTGGATTTCGACGGAACGTGCATGT
TGTTTATTTTCGGAGAGGTTTCATGTGATAATGGAGAAGCTAATGATGAA
TTTAATTAATAGAACGGGAAGTTTTAgttgtaaattaaaaaaatgattga
tTTCCTGATTGAATTGTACTAATGGCTTTCGGTCAGCACTCTGACCTATT
GCGTTAGAAATCAAGTCACGGCAAATTTTGGAGCTTTTTGAGCTGCTTTC
ATTATTGAAGCAACTTTGGTTAAGAGACTATGTTTGCCTTTAAACCCTAA
AGTTTCATAGTTCTTACCGTCTTTGGAATTCTAAAACTAAATGTGAAGTA
AATGTGGATGAAACATAACGCTCATTGTCTTTGTTATTTCCATCCTGCTT
CACCCTTTACCTTTCAATTAAGCCTTccttttgattgaattttgtttttc
agaTCCACGACTTGCAGAGAAATATGAGTTGAATTGCCAACAATTTCAAG
ACGATGGATTGTGGGTTCTTCGCCTCGAATATATCTCTGATTTCCTCACC
ATACACCCGAAACCCTCTGCGCTCAACTACGTCATCGCCGAACTGAAAAA
AGACGACGAATCTACTACCAAAAGAACGTCTGTGGCGGCAGTTGCCGGTA
AACGTAAAGCCACCCGTGTCGCTACACCACAGAAAGATAAACGTTTGCGA
AGAGAGACTTCAAATAGATAGTTTCTATCTAATaagttatgttttttttt
ttgctttaaagtTGATAAAGAAGACTCCCTCTAAATCTTCTTACGGTACT
CTTAGGTTAGGATCAAAATCTTCTTTCAACTTTAGTTCAGTAATCAGCGA
CTTCTTCATAATAAGTCGTTGATGTATTACACATCCTGAAGGTAGcactt
ttgtgaaagttttgagCCTTACTGGGGGATGATTGAcaatttacatttaa
aaatgctctaaaaatagaATTCTGAGGTTCCAATTATTTGGCAATgtata
ttctcaattttttggcCAATGTTATTAAGAATATTCTCATAGAGAGAGaa
cattcttatgaaaaatcgtGTAATTCGACTTTCATGTaaccaaaaatatt
cttcgaaCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012780-exon-sc0000156-1491911889:75442..75941 | TCONS_00012780-exon-sc0000156-1491911889:75442..75941 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1510915933:75442..75941 | TCONS_00012780-exon-sc0000156-1510915933:75442..75941 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1575043694:75442..75941 | TCONS_00012780-exon-sc0000156-1575043694:75442..75941 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1491911889:76243..76595 | TCONS_00012780-exon-sc0000156-1491911889:76243..76595 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1510915933:76243..76595 | TCONS_00012780-exon-sc0000156-1510915933:76243..76595 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1575043694:76243..76595 | TCONS_00012780-exon-sc0000156-1575043694:76243..76595 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1491911889:80844..81503 | TCONS_00012780-exon-sc0000156-1491911889:80844..81503 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1510915933:80844..81503 | TCONS_00012780-exon-sc0000156-1510915933:80844..81503 | Clytia hemisphaerica | exon |
| TCONS_00012780-exon-sc0000156-1575043694:80844..81503 | TCONS_00012780-exon-sc0000156-1575043694:80844..81503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:75442..81503 + |
Blast
BLAST of TCONS_00012780 vs. Swiss-Prot (Human)
Match: TOPB1 (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 1.035e-37 Identity = 79/225 (35.11%), Postives = 130/225 (57.78%), Query Frame = 1
Query: 358 KYRFLFSGLTVQEKIEYGAVVEQLGGEFLDVQYFSTQCSHVIVNAPTRSEKYLAAVSSGKWILHKSYLEASREAGRFVDEEDHEWGA----------DLELQQFESSGKRLRMELIEKRLEDPKFNIFKGWNVLMCIETSKVPGVKRIVEAGGGCILA--TRPPFENKEGATHLFLTDPRL-AEKYELNCQQFQDDGLWVLRLEYISDFLTIHPKPSALNYVIAE 993
+Y F S L QE+I+Y ++E+LGG ++ Q F C+H++V P R+EKYLA+V++GKW+LH+SYLEA R AG FV EED+EWG+ +++ ++ + R R ++ +++ F GW V++ ++ S+ G KR++++GG +L + P F+ ATHLF +L + +N + ++ LR EYI+D+L P NY + E
Sbjct: 1267 QYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVPLFKE---ATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPE 1488
The following BLAST results are available for this feature:
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