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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012769 ID=TCONS_00012769|Name=TCONS_00012769|organism=Clytia hemisphaerica|type=transcript|length=1331bp
CGAAAAAAGAAATAGTCCTGAAAGTTTTGGTACCGGACtctaaaatatat
atttacCCCCCTCTCCTCCGTCATTGATGGCTATCTACATGTCTTTCATC
TTTTTATTTCAGTCAAATAGAAAAAGAACCGCATTGAAAACAAATGAACC
AATCATGAGTACACTACCATCCGCACCGATGAACGTTTTGTCCAATGTAA
ACGTACCAGGTATAATCTTATTCAATAGTGAAGATGGCTtggcaaaattt
caagaatcaACATTGAAACATGCAATGTTTAATAATTCGGAATATTACAA
GATGATTCCTACCAAATACACCAATCGGGATGCTCAAACGGCGCTGGTTT
GGCTTTTTAATGCATTGCAATTCACCATCAATTTTCTCATTGCAAACTAT
CCACCTAGATCACAGAAGATGAACGATTTATACGCGTCCTTTGAAACGTA
TGACGCTGATACTAATCCAGTTCTGATAAAATATGGTGAATTAATCGAAC
TANCGCGTCCTTTGAAACGTATAACCCTGATACTAATCCAGTTCTGATAA
AATATGGTGAATTAATCGGACTTAGAAACGTTATAAGATACTTCAGGAAT
AATCCGCTGACACCAAGAGGTTTGACAATGTTAGACATGCGTAATTTAAT
TGTAACTGCGCAACCCTTTATGGCCGTACGTCACTATGCGTCACCATCTG
TCGTCCATCACGGACCAGTCGATCGCGACAATGTTACGTTAGACTCAACG
CAGACAATGATGAAAGGCTTATTAAATGTTGACATAAAATGGCAAGGTGT
TGGCTTTTTAgcttttatggaaatttcggaTATATGGCCTGGTTTAGGAG
AAGGGCACGTGGTCGCAGCAGTGGCAGCCGTCAACGGAAGACATGTTTTG
CTGTATCCTACTATGGTAGAACTTTTCCCGTTGTGGGTAAGAGATGATAT
CTTGTACCAAGCAATGTCAAAGATTGATAAACGAGACGGAAAGCAGAGAG
GACTcattgaaatttatttgaatttaCCTTAAATTACACAGGGAGAgatc
aaaataaatttgaatcgTTGTTTCGCTGATTGATACAAACGTGAATGGAa
tcaaaaaacctaaaaaacttATATGGAGCCCTATGACAGAGAAAATATGA
GCGGTATAGCTTCGTGGAAATTGACTCATCTTTTGCATTTACTGTGTTGT
TTGTTGCAATATAAAGGCTCCTTCTTTCGAAATGGTCCGCGGCCAAAGCA
AGTTTCTCACATTGAcaatattgtatattttttgtaaaatcttaaGAGAC
GTGTGAAATATCGATATGACTTATTTTCCCA Run BLAST on NCBI protein sequence of TCONS_00012769-protein >TCONS_00012769-protein ID=TCONS_00012769-protein|Name=TCONS_00012769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MAIYMSFIFLFQSNRKRTALKTNEPIMSTLPSAPMNVLSNVNVPGIILFN
SEDGLAKFQESTLKHAMFNNSEYYKMIPTKYTNRDAQTALVWLFNALQFT
INFLIANYPPRSQKMNDLYASFETYDADTNPVLIKYGELIELXRPLKRIT
LILIQF Run BLAST on NCBI transcript from alignment at sc0000147:487559..488889 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012769 ID=TCONS_00012769|Name=TCONS_00012769|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at sc0000147:487559..488889 (Clytia hemisphaerica)
TGGGAAAATAAGTCATATCGATATTTCACACGTCTCttaagattttacaa
aaaatatacaatattgTCAATGTGAGAAACTTGCTTTGGCCGCGGACCAT
TTCGAAAGAAGGAGCCTTTATATTGCAACAAACAACACAGTAAATGCAAA
AGATGAGTCAATTTCCACGAAGCTATACCGCTCATATTTTCTCTGTCATA
GGGCTCCATATaagttttttaggttttttgatTCCATTCACGTTTGTATC
AATCAGCGAAACAAcgattcaaatttattttgatcTCTCCCTGTGTAATT
TAAGGtaaattcaaataaatttcaatgAGTCCTCTCTGCTTTCCGTCTCG
TTTATCAATCTTTGACATTGCTTGGTACAAGATATCATCTCTTACCCACA
ACGGGAAAAGTTCTACCATAGTAGGATACAGCAAAACATGTCTTCCGTTG
ACGGCTGCCACTGCTGCGACCACGTGCCCTTCTCCTAAACCAGGCCATAT
AtccgaaatttccataaaagcTAAAAAGCCAACACCTTGCCATTTTATGT
CAACATTTAATAAGCCTTTCATCATTGTCTGCGTTGAGTCTAACGTAACA
TTGTCGCGATCGACTGGTCCGTGATGGACGACAGATGGTGACGCATAGTG
ACGTACGGCCATAAAGGGTTGCGCAGTTACAATTAAATTACGCATGTCTA
ACATTGTCAAACCTCTTGGTGTCAGCGGATTATTCCTGAAGTATCTTATA
ACGTTTCTAAGTCCGATTAATTCACCATATTTTATCAGAACTGGATTAGT
ATCAGGGTTATACGTTTCAAAGGACGCGNTAGTTCGATTAATTCACCATA
TTTTATCAGAACTGGATTAGTATCAGCGTCATACGTTTCAAAGGACGCGT
ATAAATCGTTCATCTTCTGTGATCTAGGTGGATAGTTTGCAATGAGAAAA
TTGATGGTGAATTGCAATGCATTAAAAAGCCAAACCAGCGCCGTTTGAGC
ATCCCGATTGGTGTATTTGGTAGGAATCATCTTGTAATATTCCGAATTAT
TAAACATTGCATGTTTCAATGTtgattcttgaaattttgccaAGCCATCT
TCACTATTGAATAAGATTATACCTGGTACGTTTACATTGGACAAAACGTT
CATCGGTGCGGATGGTAGTGTACTCATGATTGGTTCATTTGTTTTCAATG
CGGTTCTTTTTCTATTTGACTGAAATAAAAAGATGAAAGACATGTAGATA
GCCATCAATGACGGAGGAGAGGGGGgtaaatatatattttagaGTCCGGT
ACCAAAACTTTCAGGACTATTTCTTTTTTCG Coding sequence (CDS) from alignment at sc0000147:487559..488889 >TCONS_00012769 ID=TCONS_00012769|Name=TCONS_00012769|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000147:487559..488889 (Clytia hemisphaerica)
TCAGAACTGGATTAGTATCAGGGTTATACGTTTCAAAGGACGCGNTAGTT
CGATTAATTCACCATATTTTATCAGAACTGGATTAGTATCAGCGTCATAC
GTTTCAAAGGACGCGTATAAATCGTTCATCTTCTGTGATCTAGGTGGATA
GTTTGCAATGAGAAAATTGATGGTGAATTGCAATGCATTAAAAAGCCAAA
CCAGCGCCGTTTGAGCATCCCGATTGGTGTATTTGGTAGGAATCATCTTG
TAATATTCCGAATTATTAAACATTGCATGTTTCAATGTtgattcttgaaa
ttttgccaAGCCATCTTCACTATTGAATAAGATTATACCTGGTACGTTTA
CATTGGACAAAACGTTCATCGGTGCGGATGGTAGTGTACTCATGATTGGT
TCATTTGTTTTCAATGCGGTTCTTTTTCTATTTGACTGAAATAAAAAGAT
GAAAGACATGTAGATAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012769-exon-sc0000147-1491911889:487559..488889 | TCONS_00012769-exon-sc0000147-1491911889:487559..488889 | Clytia hemisphaerica | exon |
| TCONS_00012769-exon-sc0000147-1510915933:487559..488889 | TCONS_00012769-exon-sc0000147-1510915933:487559..488889 | Clytia hemisphaerica | exon |
| TCONS_00012769-exon-sc0000147-1575043694:487559..488889 | TCONS_00012769-exon-sc0000147-1575043694:487559..488889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:487559..488889 . |
Blast
The following BLAST results are available for this feature:
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