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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012746 ID=TCONS_00012746|Name=TCONS_00012746|organism=Clytia hemisphaerica|type=transcript|length=3276bpRun BLAST on NCBI transcript from alignment at sc0000147:375780..398762- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012746 ID=TCONS_00012746|Name=TCONS_00012746|organism=Clytia hemisphaerica|type=transcript|length=22983bp|location=Sequence derived from alignment at sc0000147:375780..398762- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012746 vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3) HSP 1 Score: 756.903 bits (1953), Expect = 0.000e+0 Identity = 421/1099 (38.31%), Postives = 643/1099 (58.51%), Query Frame = 1
Query: 13 ERLGSIWSIEKQHSKEAGKKPSFFRAMLLYAFPTMVRAGLFAFAQICLRILQPFLLKQVIDSISNKSKQED-----AVYWGLGLVATLLITPNLHPHVFLVQELLGTDIKSAGLTLIFKKALRVHQGGISKITTGKLVTLVSTDAQKLQEGLYLFHSLWVGPLVIIATTAILWQALGPSCLAGISILILMIPLQSFFGKTFAKLRSKTVGKTDQRVNTMNEIISSMQVTKMYTWENSFAKMISDIRKKETNCVMRSAMLKAFNMAFSMSSNYIVLFATFSTYYFHGSGHVTLGLLFQAMSLFFLVRTESLLLFPIGFQLLMESKIGCQRIAQFLLTEEMEEKSEVKKTSEPKM-DFDNVTASWTEESE-EILKSVSFSVNEKNKLMMLVGPVGSGKSSILNAALREMSIKKGSINTQGKVVYTSQQSWIFSSTIRQNIIFGNEFDVERYKRVIDACALKTDLKLFEKGDLTLVGERGVSLSGGQKARIGLARAVYQNADIYLLDDPLSAVDTKVARHIFEKCINGXXXXXXXXXXTHQIQYLQHASSIYTMKEGNAV-KISLEEIVELGIDIGQ--DEDDVAEDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMATLACSTSFERSSIRYRLSRSNSRKSINSMVFAEEELDNEANSKEEKQTKQGAVKADIYYQYYKDGLGWFVTLCLFLGIVFVQVLFTMTDYFMASWARSEEQRARNEPITDSFIFTDNPTNNIY--TFAVLAFLTLICNYLRTAGYFISLVKCSRVAHNSMFDAVLKSPIYFFDTNPVGQILNRFSRDIFQMDDELPWKSFDAINNGVLMTTLVAVNIVSMPYLLIIVVPLAVIFYKFREYYMKTSRQIRRLEASSRSPLYTHISATFSGLTTIRAFDKQDKIMEEFFTCQDYQASAWIVFVRASRWFCYRLDMMAAIFGVVAVLATTIAVRYTDVDPGLAGISLSYVMILPGLFQWAIRQSTEVSNLMVAVERVREYSQLEAEEDVGNNEKIPKGWPSRASITASKASFQYHHTLPAVLKQVNFEIKEGEKIGIVGRTGAGKSSLLNMLFRMGKNNGAIKIDGYDIQNLKLQTLRNAISVIPQ 3273
E L W E ++ +KPS RA++ + + + G+F + +++QP L ++I+ N + A + L LI LH F + G ++ A +I++KALR+ + K TTG++V L+S D K + H LW GPL IA TA+LW +G SCLAG+++LI+++PLQS FGK F+ LRSKT TD R+ TMNE+I+ +++ KMY WE SF+ +I+++RKKE + ++RS+ L+ N+A S++ I++F TF+TY GS +T +F A++L+ VR L FP + + E+ + +RI FLL +E+ +++ + KM + TA W + SE L+ +SF+V +L+ +VGPVG+GKSS+L+A L E++ G ++ G++ Y SQQ W+FS T+R NI+FG +++ ERY++VI ACALK DL+L E GDLT++G+RG +LSGGQKAR+ LARAVYQ+ADIYLLDDPLSAVD +V+RH+FE CI +L K+ +LVTHQ+QYL+ AS I +K+G V K + E ++ GID G +D+ +Q + TL T F SS+ S+ +SR S+ ++ +N + E+ +G V Y Y++ G W V + L L QV + + D++++ WA +Q N + T+ N Y ++ L T++ R+ F LV S+ HN MF+++LK+P+ FFD NP+G+ILNRFS+DI +DD LP D I + + +V+V + +P++ I +VPL +IF R Y+++TSR ++RLE+++RSP+++H+S++ GL TIRA+ +++ E F QD + AW +F+ SRWF RLD + A+F ++ + I + +D G G++LSY + L G+FQW +RQS EV N+M++VERV EY+ LE E ++ P WP I +F Y P VLK + IK EK+GIVGRTGAGKSSL++ LFR+ + G I ID + L LR +S+IPQ
Sbjct: 58 EELQGFWDKEVLRAENDAQKPSLTRAIIKCYWKSYLVLGIFTLIEESAKVIQPIFLGKIINYFENYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRLRVAMCHMIYRKALRLSNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVTALLWMEIGISCLAGMAVLIILLPLQSCFGKLFSSLRSKTATFTDARIRTMNEVITGIRIIKMYAWEKSFSNLITNLRKKEISKILRSSCLRGMNLASFFSASKIIVFVTFTTYVLLGSV-ITASRVFVAVTLYGAVRLTVTLFFPSAIERVSEAIVSIRRIQTFLLLDEISQRNRQLPSDGKKMVHVQDFTAFWDKASETPTLQGLSFTV-RPGELLAVVGPVGAGKSSLLSAVLGELAPSHGLVSVHGRIAYVSQQPWVFSGTLRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTTLSGGQKARVNLARAVYQDADIYLLDDPLSAVDAEVSRHLFELCICQILHEKITILVTHQLQYLKAASQILILKDGKMVQKGTYTEFLKSGIDFGSLLKKDNEESEQPPVPGT------------------------PTLRNRT-FSESSV---WSQQSSRPSLKDGALESQDTENVPVTLSEENRSEGKVGFQAYKNYFRAGAHWIVFIFLILLNTAAQVAYVLQDWWLSYWA--NKQSMLNVTVNGGGNVTEKLDLNWYLGIYSGLTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILNRFSKDIGHLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPWIAIPLVPLGIIFIFLRRYFLETSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFAVRLDAICAMFVIIVAFGSLILAK--TLDAGQVGLALSYALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKEAPWEYQKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDLRKKMSIIPQ 1122 The following BLAST results are available for this feature:
BLAST of TCONS_00012746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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