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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012707 ID=TCONS_00012707|Name=TCONS_00012707|organism=Clytia hemisphaerica|type=transcript|length=7259bpRun BLAST on NCBI transcript from alignment at sc0000147:5656..39583- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012707 ID=TCONS_00012707|Name=TCONS_00012707|organism=Clytia hemisphaerica|type=transcript|length=33928bp|location=Sequence derived from alignment at sc0000147:5656..39583- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012707 vs. Swiss-Prot (Human)
Match: MTMRD (Myotubularin-related protein 13 OS=Homo sapiens GN=SBF2 PE=1 SV=1) HSP 1 Score: 503.827 bits (1296), Expect = 5.461e-146 Identity = 267/708 (37.71%), Postives = 424/708 (59.89%), Query Frame = 2
Query: 182 MSRLADYFFIVGVEDTSELANGKELKGTVVQKFPDQDWKDAPSPQGLEVFCQPTGWQVSSKPKEPTFQVTILTDVSGKRSYLACLCYFEQVSQKRDSHVXXXXXXXXXXXXDVKEAITASEYAVEEFYYVPRCLCVVSRNRYYQTLKNCLITIFNAYLNNQTELLEKMIGCMIGFVHVPPPGGPKLTFSIGGSDNQVIHPQLTANLPATQDSIAIIFHQLGIHSMLQVFTALVTECKIVLLSSSYSHLIMAAEALISLLYPQTFNHVFIPVLPAALLDFVSAPTPFLMGVHTSYGEYLPELFDVVHVNIDEGYVTVPDSINLSVIPEPYYTQILKTLKMILTPSLYTLDILLPVSDPAPSLV-LQDKQLRAVFIKFFAEITAGYRACLTLIRVHPEPIISFNKLAFMEKRGFLGDDFISKVLD--SFSTMLQTRGPPYRVIDMFDRLVVEFLPSKEKEEKSIQQLLSELISIVDELMTNEVSLESPDENKIPNISPELLMKPMKG---------FPLLSETKINSYITKNENSTQQAKAFQAPVEEPTQVP-----MSSYDKPTTHFINQRRLEVIKDCIQYIYDNKISEARKAIPSVKRALTSKGAQLALCNELEIRVRNDNSLLEHDQYNLLVYLINSALQDDNTVNSTNVAARIVPLVAAFHRKLGPSVIQFAYTSVQDHSIWSNSQFWEEAFYNEAQRRLIELY 2254
M+RLADYF +VG D + +G+ L G ++Q+FP +DW D P PQG+E+FCQP GWQ+S + K+PTF V +LTD+ R Y +CL ++E + ++ + E V I +E + P+ L +VSR Y + + CL I+ Y+++ LE +I + + VP GG + FS+G D Q+I L +LP T S+A++F QLGI ++L +F A++TE K++ S+S+ L A AL SL++P +++ +IP+LPA LL+ +S+PTPF++GVH+ + + EL DV+ ++D G + +P+ I+LS +PEP Q L +IL P L D P A S + DK++RAVF++ FA++ GYR+CL LIR+H EP+I F+K AF+ +RG + +DF++KVL +F+ + RGPPYR D+FD LV + + EE + +++ + + ++L NE N P+++ + + +P +G FP ++E ++ I +N Q A +E+ VP +S DK TT F + +RLEV+++CI +I++NKI E K +P+ RAL K A+ L +EL + V+ + ++L+H Q++ ++ ++N LQD +++ N+AA ++PL +AF+RKL P V QFAYT VQDH IW+N QFWE FYN Q ++ LY
Sbjct: 1 MARLADYFIVVGY-DHEKPGSGEGL-GKIIQRFPQKDWDDTPFPQGIELFCQPGGWQLSRERKQPTFFVVVLTDIDSDRHYCSCLTFYEA-----EINLQGTKKEEIEGEAKVSGLIQPAEV------FAPKSLVLVSRLYYPEIFRACLGLIYTVYVDSLNVSLESLIANLCACL-VPAAGGSQKLFSLGAGDRQLIQTPLHDSLPITGTSVALLFQQLGIQNVLSLFCAVLTENKVLFHSASFQRLSDACRALESLMFPLKYSYPYIPILPAQLLEVLSSPTPFIIGVHSVFKTDVHELLDVIIADLDGGTIKIPECIHLSSLPEPLLHQTQSALSLILHPDLEVADHAFPPPRTALSHSKMLDKEVRAVFLRLFAQLFQGYRSCLQLIRIHAEPVIHFHKTAFLGQRGLVENDFLTKVLSGMAFAGFVSERGPPYRSCDLFDELVAFEVERIKVEENNPVKMIKHVRELAEQLFKNE--------NPNPHMAFQKVPRPTEGSHLRVHILPFPEINEARVQELIQENVAKNQNAPP-ATRIEKKCVVPAGPPVVSIMDKVTTVFNSAQRLEVVRNCISFIFENKILETEKTLPAALRALKGKAARQCLTDELGLHVQQNRAILDHQQFDYIIRMMNCTLQDCSSLEEYNIAAALLPLTSAFYRKLAPGVSQFAYTCVQDHPIWTNQQFWETTFYNAVQEQVRSLY 685 HSP 2 Score: 428.713 bits (1101), Expect = 1.111e-121 Identity = 342/1088 (31.43%), Postives = 531/1088 (48.81%), Query Frame = 2
Query: 2642 SAMKLAADLMGEWDKKTEEEKGQLIYEEESIIFSLTKLFVQHMMYLRVPTNACVEMXXXXXXXXXXXXXXXXXAGGGGANELQIDDTASIARAAPSIMDNQSTYFXXXXXXXXXXXXTADMLDGRMGFGES----VQDSASNFIRRFIERVCSEAGVTEQHLRNLTENIPMLVGMHIESLEEVYRETKDTP-TYKAKITKPNLLPGENFCQIEGMRCFLIADGRELGIREENKTRLSVNETFDDERELNIGAMNGGPCLLPAEGALFLTNYRVIFKGTPLDQFASEMTVTRAFPIGSLIKEKKVTKAVNIQMSHQIQTCDMYLQIRSSTMQLMKLAFDEEVIPETIENFRMLLRRSRWPLSVYNTFAF--NYEAPPVLHRTYSQRQRALRRTHKSINAHLKKKGVDSV--------------------KGRSASDDLEAEEMQQV-----LLEQENRGADRLKESPICKDYERLGLCEITKISASP----WRISMANFHYNVCRSYPAVVVIPSKVSDDSLIKVAKNHRLNRFPTAVWRHKRTKGTLLRSGALNRSVLTAVLRT--GLGGRQTMGNHSANITDDEQFFTEIVNASHLYQ--HKGQTQTVSSGAALSLQAMSD---------------DFASMFEGSD---AFQRSAAEISEIKNWEPANLYIFTRGTPKVN-KMESSQKXXXXXXXXXXXXXXKASFSKLSKVCCPSSISNESH--FLSSFEESKWXXXXXXXXXXXCAVANLIVIQGSSCLVSLGDGSEVTSQVISLVQILSDPYYRTIAGFKVLIEKDWLAFGYRFSYRGNHTXX-XXXXXXXXXXXXLDCVHQIIEQYPHAFEFNNYFIKLIAYHQTSMRFNTFFLDSEHERYQNGWFPDSEKVNPMTVKSDTSVKGKTNLVRNKKEANLRXXXXXXXXXXXXXXXXXXVSLWDYLDIQGNKYTLFQSFLYHPNLHKGILQPFCNISNLEVWDYLTVENLFTGPTYDVEMMADFEMANPGTXFTGPTYDVEMMADFEMANPGTESSASADIDREDLQRCVTGCYGSTQEFPRDEVTYLLSELVRLRDEMDQSNRQWTDTWSDLDV 5719
+AM LAA+ + W ++ + +L+ EES +FS F M+ L VP + N+L + +AP ++ S S++ +S GS A+ D GF +S + +S FI RFI++VC+E+GVT+ H+++L IP +V MHIE+LE V+RE++ P K KI +P LLPGE EG+R L DGRE + AEGALFLT YR++F+GTP DQ E TV R+FPI S+ KEKK+T +Q + Q LQI S++ QL+K+AFDEEV PE +E F+ L + R+P S+++TFAF P ++ ++ + R K+I K+ G ++ G + DD+ + ++ L E ++L E +DY+RLGL I+ S+ +RI+ +N Y++CRSYP ++V+P V D SL +VA+ +R NR P W++ R+ LLRSG + + + ++ T S++ + E++ ++NA ++Q T TV ALS + D + G D +F S+ +++ + A LYIF + N K+E + V V+ H++ QVKASF KL + C PS+I +S FL + +S+W Q+ ++QL+ V+ ++ GSS LV L +G ++T+QV SLVQ+LSDP+YRT+ GF++L+EK+WL+FG++FS R + T AP F QFLDCVHQ+ QYP FEFN Y++K +A+H S RF TF LDS++ER ++G L +K E + + V +W+ +D + +F ++LY P L L+P N+S+L+ WDY E L TGP+YD M+ T P+ D ++ + A P ++ +R V CY D +T L SE+ +L +++Q+ +W W + V
Sbjct: 712 TAMDLAAEQLRLWPTLSKSTQQELVQHEESTVFSQAIHFANLMVNLLVPLDT-------------------------SKNKL-------LRTSAPGDWESGSN----SIVTNSIAGSVAESYDTESGFEDSENTDIANSVVRFITRFIDKVCTESGVTQDHIKSLHCMIPGIVAMHIETLEAVHRESRRLPPIQKPKILRPALLPGEEIV-CEGLRVLLDPDGREEATGGLLGGPQLLP----------------------AEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQNQLQQNMQ-----EGLQITSASFQLIKVAFDEEVSPEVVEIFKKQLMKFRYPQSIFSTFAFAAGQTTPQIILPKQKEKNTSFRTFSKTIVKGAKRAGKMTIGRQYLLKKKTGTIVEERVNRPGWNEDDDVSVSDESELPTSTTLKASEKSTMEQLVEKACFRDYQRLGLGTISGSSSRSRPEYFRITASNRMYSLCRSYPGLLVVPQAVQDSSLPRVARCYRHNRLPVVCWKNSRSGTLLLRSGGFHGKGVVGLFKSQNSPQAAPTSSLESSSSIEQEKYLQALLNAVSVHQKLRGNSTLTVRPAFALSPGVWASLRSSTRLISSPTSFIDVGARLAGKDHSASFSNSSYLQNQLLKRQ-AALYIFGEKSQLRNFKVEFALNCEFVPVEFHEIRQVKASFKKLMRACIPSTIPTDSEVTFLKALGDSEWFPQLHRIMQLAVVVSE-VLENGSSVLVCLEEGWDITAQVTSLVQLLSDPFYRTLEGFQMLVEKEWLSFGHKFSQRSSLTLNCQGSGFAPVFLQFLDCVHQVHNQYPTEFEFNLYYLKFLAFHYVSNRFKTFLLDSDYERLEHG-----------------------TLFDDKGEKHAK----------------KGVCIWECIDRMHKRSPIFFNYLYSP-LEIEALKPNVNVSSLKKWDYYIEETLSTGPSYDWMML---------TPKHFPSEDSDLAGE---AGPRSQ------------RRTVWPCYDDVSCTQPDALTSLFSEIEKLEHKLNQAPEKWQQLWERVTV 1669 HSP 3 Score: 107.457 bits (267), Expect = 9.321e-23 Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 2
Query: 6119 RNFKGTLYKRGHLLKQWKPRWFVLDAERNHLTYYDSEADTQLQGYIDLGELRTCRLMQVPPGAAKVGDARSYFELETTKRVYQLLAPNGDTAKEWVERLNA 6421
R+F+GTLYKRG LLK WKPRWFVLD ++ L YYDS DT +G+IDL E+ GA K +++F+L+T+KRVY A +G +A++W++++ +
Sbjct: 1744 RSFEGTLYKRGALLKGWKPRWFVLDVTKHQLRYYDSGEDTSCKGHIDLAEVEMVIPAGPSMGAPKHTSDKAFFDLKTSKRVYNFCAQDGQSAQQWMDKIQS 1844 The following BLAST results are available for this feature:
BLAST of TCONS_00012707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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