TCONS_00012689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012689
Unique NameTCONS_00012689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1006

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012689 ID=TCONS_00012689|Name=TCONS_00012689|organism=Clytia hemisphaerica|type=transcript|length=1006bp
AATAAACGTAGTTTGATAACATATTACATCATAACACCATAGTAAGATCC
ATCTCCATatcaacaataaaaaatttatatctctacacaaaaaaagagaa
attctcATAGGACGATCAATTTAcagttttaacattttttatgaTGTTTT
TGTTCTGTTTATAGTGTTTCATCATCATAACAGAGTAAGGATTATAAGAA
ATTTGATGATATATGATATAGAAGAGAATGTCTAAGGAGCTTAGAGAGAA
GTTAAAGGAAGCGTTCCTTTCCATTGATGTTTCGCAAGACGGCTCAATAG
ATTGGGAAGAATTACAAATTTGCTGTAAAAATATTGAACTGAAGCTAGAC
GATACGGATAAAGACGATTTCCAACGTTACAGTAAATGTCCTGTAAATTA
TAACNACGGATAAAGACGATTTCCAACGTTACAGTCAATGTGCTGTAAAT
TATAACAAAGAAGTTAGAGAAGGACTCGATTTCAACCAATTTTCAGACTT
TGTTCGGAATCGTTTAAGAAAGACATTTAATGCTGTAGACACAAATCGAA
ATGGATTTATTGATCACAATGAAATTGTACAAGTGTTGCAAAAAACTGGC
ATAAAAGTTAGCAGCCGTAAAATTAATGCTATTCTAAATGCAATGGATAA
TGACGGTGACCAAAGAATCAGTTTTGATGAATTTTGTACCTTTTTTGGTG
ATGTTCCATCACCCAACATGCAGTTTATTGCTAACCTATGGTCTACAGGT
GAAGGACTAGATTTTGGTTCTGATGTTGTACCTATTAGTATACCTCCTGC
TGAAATGCCACTTTATCAGTTCATGATTGCAGGTGGGGTTGCTGGAATAG
CCTCAAGAACGTTGACTGCGCCTTTGGAAAAGTTGAAGATTATTGCACAg
ACTTCTTCAAACCAAACGACTAAACTATCACAAACATTTACACACATTTA
TCGACACGAAGGAATGAGAGGATTCTTCGCTGGAAATTTTGCCAATTGTG
TTCGTG
Run BLAST on NCBI

transcript from alignment at sc0000147:320147..321334+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012689 ID=TCONS_00012689|Name=TCONS_00012689|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at sc0000147:320147..321334+ (Clytia hemisphaerica)
AATAAACGTAGTTTGATAACATATTACATCATAACACCATAGTAAGATCC
ATCTCCATatcaacaataaaaaatttatatctctacacaaaaaaagagaa
attctcATAGGACGATCAATTTAcagttttaacattttttatgaTGTTTT
TGTTCTGTTTATAGTGTTTCATCATCATAACAGAGTAAGGATTATAAGAA
ATTTGATGATATATGATATAGAAGAGAATGTCTAAGGAGCTTAGAGAGAA
GTTAAAGGAAGCGTTCCTTTCCATTGATGTTTCGCAAGACGGCTCAATAG
ATTGGGAAGAATTACAAATTTGCTGTAAAAATATTGAACTGAAGCTAGAC
GATACGGATAAAGACGATTTCCAACGTTACAGTAAATGTCCTGTAAATTA
TAACNACGGATAAAGACGATTTCCAACGTTACAGTCAATGTGCTGTAAAT
TATAACAAAGAAGTTAGAGAAGGACTCGATTTCAACCAATTTTCAGACTT
TGTTCGGAATCGTTTAAGAAAGACATTTAATGCTGTAGACACAAATCGAA
ATGGATTTATTGATCACAATGAAATTGTACAAGTGTTGCAAAAAACTGGC
ATAAAAGTTAGCAGCCGTAAAATTAATGCTATTCTAAATGCAATGGATAA
TGACGGTGACCAAAGAATCAGTTTTGATGAATTTTGTACCTTTTTTGGTG
ATGTTCCATCACCCAACATGCAGTTTATTGCTAACCTATGGTCTACAGGT
GAAGGACTAGATTTTGGTTCTGATGTTGTACCTATTAGTATACCTCCTGC
TGAAATGCCACTTTATCAGTTCATGATTGCAGGTGGGGTTGCTGGAATAG
CCTCAAGAACGTTGACTGCGCCTTTGGAAAAGTTGAAGATTATTGCACAg
gtaattattataaatattATGCTTCTTTTCTAAtaatattaaaattttat
tcGTTTTTTGGTTAcgaattttgtcaaatttttcttGCAGTGGTGTTTGT
TTAATACCTTCAATTTTATGGAGGAAATTTTATGCCACTGGTTTCAGGGT
TGGTAATATATAAGTGACCTTTAACTTTGTAGACTTCTTCAAACCAAACG
ACTAAACTATCACAAACATTTACACACATTTATCGACACGAAGGAATGAG
AGGATTCTTCGCTGGAAATTTTGCCAATTGTGTTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007127XLOC_007127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012689-exon-sc0000147-1491911889:320147..321046TCONS_00012689-exon-sc0000147-1491911889:320147..321046Clytia hemisphaericaexon
TCONS_00012689-exon-sc0000147-1510915933:320147..321046TCONS_00012689-exon-sc0000147-1510915933:320147..321046Clytia hemisphaericaexon
TCONS_00012689-exon-sc0000147-1575043694:320147..321046TCONS_00012689-exon-sc0000147-1575043694:320147..321046Clytia hemisphaericaexon
TCONS_00012689-exon-sc0000147-1491911889:321229..321334TCONS_00012689-exon-sc0000147-1491911889:321229..321334Clytia hemisphaericaexon
TCONS_00012689-exon-sc0000147-1510915933:321229..321334TCONS_00012689-exon-sc0000147-1510915933:321229..321334Clytia hemisphaericaexon
TCONS_00012689-exon-sc0000147-1575043694:321229..321334TCONS_00012689-exon-sc0000147-1575043694:321229..321334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:320147..321334 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	2.4761	10.9512	10.5954	1.71097	0.674584	0.0847996	0.252756	0.206311	0.176837	0.631776	0.182729	0	0	0	0	0	0	0.164405	0	0	0	0.967065	1.41082	0	0	0	0
Blast
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BLAST of TCONS_00012689 vs. Swiss-Prot (Human)
Match: SCMC1 (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.280e-24
Identity = 56/186 (30.11%), Postives = 104/186 (55.91%), Query Frame = 1 
Query:  475 LDFNQFSDFVRN---RLRKTFNAVDTNRNGFIDHNEIVQVLQKTGIKVSSRKINAILNAMDNDGDQRISFDEFCTFFGDVPSPNMQFIANLWSTGEGLDFGSDV-VPISIPPAEMPLYQF---MIAGGVAGIASRTLTAPLEKLKIIAQTSSNQTTKLS--QTFTHIYRHEGMRGFFAGNFANCVR 1005
            LDF +F  ++++   +++  F ++D N +G I+ +EIVQ LQ  G+ +S ++   IL ++D DG   + ++E+  +F   P  +++ I   W    G+D G  + +P      E    Q+   ++AGG+AG  SRT TAPL++LKI+ Q   +++ K++    F  + +  G+R  + GN  N ++
Sbjct:   75 LDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEWRDYFLFNPVTDIEEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGSKSDKMNIFGGFRQMVKEGGIRSLWRGNGTNVIK 260
The following BLAST results are available for this feature:
BLAST of TCONS_00012689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCMC13.280e-2430.11Calcium-binding mitochondrial carrier protein SCaM... [more]
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