TCONS_00012679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012679
Unique NameTCONS_00012679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012679 ID=TCONS_00012679|Name=TCONS_00012679|organism=Clytia hemisphaerica|type=transcript|length=2107bp
tttaaagaaaaaaacatagaaaGATAATCACAAACCTCTATCCTTTTAAA
CATATTGATCAGGTTTATCCCTGACTGTTGATTTGACTTGATTTGTTaaa
taattccaaaaattttatagttgaaaaatttttcgcgaaCAAGCTGAGGT
TCGGACCTATAACTTCTAGTTTTAGAAATGCAAAATCGACTTCTTGGAAA
AGCAAAGAAGATAACTATTGTAcaatcaaaaacgaaagtgaaagttgatt
cgaaattattttttctgagtttttcaaaaaaataaaaatattgatcaaCC
ACCCAGGACAAGCCAGGAGAATGTCTCTGTTTCACTATGTAACATACAAA
TATATTATCATCAAGGATAAACGGCTTGGAATAGCCTACTATATATTGGC
ATTTCTCATAATATTTTATACATTGGTTCAGCTCTTGGTCAACAAATCAT
ATTTACAGTATGATTCCTCACCAAGTGGAAACATGAGAATCCTTGTCAAC
ACGCCCACAAAACTTCAAAACGATGAAAATGAATATAATATCAATCCTGA
TTATTGCAAACAAAAGGAAAGTGCAAACAGTACAATATGTAGAAAACTAG
ATGGGTTATCAATTAACTGGCCAATTGAATCACGTTCTGTTACTCTTGCT
ACAtttattaaagaaaaatggCAAAGACCAAAAGATTGTCAATATGCTCT
TGTTTATGATCCAGAAAATCCAGTAAAATATGAAGATTTGAGGGACGTCG
ATTACTATGCAGTAAATCCTGAGTTTGCTTTGATCAAGGTTGAACATTCG
TTTACAGCCTTTTCTGGCCAGCTGACACATTCACATCGCAGGATGTCTGG
ATCACTTGTTGATATGAATGGCAATACAATCAAAAGACTGAATTCTAATG
GAGTATCGAAGGTTGACAAGATTTTActcaaagattttttgattgCAGCC
AACGTGTCTTTAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGCGTAC
CTTTCGTCAAAACGGTTTAATACTTCATGTCTCGATCATGTATAAAAATT
CTGAGAAAATGTTGTATGGCGTCAATATTCCTGAATATACGTACCATGTC
AGAAGAGTACCGTTTTCCGATTATCGCTTGAAACAAGAAATTCCTATTGC
TAATAATGAGGGAAATATTTGTGAACGAATCATCAAGAAACGATATGCTG
TTAGAATTGAATTTCACCAAGGAGGAAAAATTGGTCAATTTTCATCAGCA
AATCTAGTCTTCCAATTGGTTTCAGTGATGGGTTTGTTAACACTGACAGC
AACGGTTATTGATGTTATAGCTCTTTATATTGTTCCAAACAAAGATAATT
ATAGGCAATACGTTTTTGATGAATCACCGGAATTTTCAGAGCAAGAAAAA
caaactttgaaagaaaatgtaaaTGATGAACAATCGAAGAAAGAtcaatg
aaattatttttagaCGCTATTCGAATTTTGAATATCTATTGTAACAGGTG
GGGGGGGGCATTCAAAAAATCTTATCTTATTcttctatgaaatgaaattt
ttaatttttttttgaaaaattagaacGCTTCGATGTTTTAGTATTGACCC
CACTTCCACgaatgtatttgtttttaattttgagaattttgaatATCTAT
AGTAAGACTGGGTCATTTTGAATAAAGGGAGAAATCTGACTTAATTCGAA
CTCGCTCTGCCCGTTTAAAGGCAATAACCCTTTGTTTGGCTAAAAATTgg
ttatttttcatctttcaaaagGCTTTTCCATTTTCAAGGTTATTTTAGCG
TGTTTGAATGATAGGCGATCAAAGCACTTCTCCAGCTAAAGGCTATGGAA
AACCTTGGAGACAAGTTAGAGGAGGGGATGTCAAGAAATTGGTGTGATCC
CATCCGCACTATAGGCAGAAAGTTATAGTTTCAAAGAGGAGATGGATTTA
GTAAATGTTTAAACTTTTTGATCACTACTGGCCATTGATATATCGATAGT
GACTTTTCAACGAATTATAACGAGATCAAGTATGTAAGGTTTTCAGAAAG
TAGTTCAATGCAACAGAATTTAAACCAATTCCATCCACCTtaaaaagtat
ccaaaat
Run BLAST on NCBI

transcript from alignment at sc0000147:234352..239148+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012679 ID=TCONS_00012679|Name=TCONS_00012679|organism=Clytia hemisphaerica|type=transcript|length=4797bp|location=Sequence derived from alignment at sc0000147:234352..239148+ (Clytia hemisphaerica)
tttaaagaaaaaaacatagaaaGATAATCACAAACCTCTATCCTTTTAAA
CATATTGATCAGGTTTATCCCTGACTGTTGATTTGACTTGATTTGTTaaa
taattccaaaaattttatagttgaaaaatttttcgcgaaCAAGCTGAGGT
TCGGACCTATAACTTCTAGTTTTAGAAATGCAAAATCGACTTCTTGGAAA
AGCAAAGAAGATAACTATTGTAcaatcaaaaacgaaagtgaaagttgatt
cgaaattattttttctgagtttttcaaaaaaataaaaatattgatcaaCC
ACCCAGGACAAGCCAGGAGAATGTCTCTGTTTCACTATGTAACATACAAA
TATATTATCATCAAGGATAAACGGCTTGGAATAGCCTACTATATATTGGC
ATTTCTCATAATATTTTATACATTGGTTCAGCTCTTGGTCAACAAATCAT
ATTTACAGGTATGCTCGTCCGTCTATTATCTCTCCAGTCCAGTCACAATa
agtcttttgtttttatataccAGATTCTCCCATCCCATCATCACTCATTA
TCCAACATAATAGAACGTAATCAAATCTCAGTCAAATACAATCGAATCCG
TAAATTGCGGTAATACTGTATTCAATTAGGATTCTATCGTTTTGGAcagt
tgaaaatttcaatcggtcgattgcgtttgatttggttcgactggttagTT
GGATCATCAACTATTCCATCCGTTtaattgagattgtctggccaTTATCA
ACCATTTTTTGTGTCAATATCATCTGTCTCAATAATACTCATTTTTGTTT
AGCATTAAtaaagcttgttttagcctttttcattttattaaagattattt
tttatcatatCATGATAATATAATGCATACGTatgggtgcatgtcactag
tccgattTTTTCTAGTCAGACAGTAAAATAGtctgaatctataaaataaa
ttcacaatttagaaatctttttttccgacgtcacttttgtccgagaACGA
GCCATTattcactgagataatattaattaAAGTTCAATTTGGCggcataa
ttagaaataaagtaCCACTAACTTTAAttacagccccccccccaaaaaaa
aaaaaaagaaaaaaaaagaacaaaaggatttaaggatttttagggtgatg
aattttgtttttaatgtttagTATGATTCCTCACCAAGTGGAAACATGAG
AATCCTTGTCAACACGCCCACAAAACTTCAAAACGATGAAAATGAATATA
ATATCAATCCTGATTATTGCAAACAAAAGGAAAGTGCAAACAGTACAATA
TGTAGAAAACTAGATGGGTTATCAATTAACTGGCCAATTGAATCACGTTC
TGTTACTCTTGCTACAtttattaaagaaaaatggCAAAGACCAAAAGATT
GTCAATATGCTCTTGTTTATGATCCAGAAAATCCAGTAAAATATGAAGAT
TTGAGGTAATTAACAAAGCTGCACTAATCACACAGAttaaattttggtaa
atttagagGAATGTTTTCAAATATCATTACAGCAGGTTacattgtttcaa
tttttcaattaataACGACATGAAATCAAATGATAAGCACATGATTTGTG
CTGCAATAGAAAGCTaaaacatatatttttttcttgtgaaaatataaaaa
gttcCATTTTTCTATTTATACCGATTTTGTGTTTCAATTTATAGGGACGT
CGATTACTATGCAGTAAATCCTGAGTTTGCTTTGATCAAGGTTGAACATT
CGTTTACAGCCTTTTCTGGCCAGCTGACACATTCACATCGCAGGATGTCT
GGATCACTTGTTGATATGAATGGCAATACAATCAAAAGGTGATCATTTGT
ACATTTGGTTTTATATTTAAGGAGGATTATTTTCAGAGTATGTGAAATAG
TTTTGTCGATTTTTGAGCAgtcaaattactaatctactaATCTACAAATT
ATAACCACTATAGCTTTCACTCATGCaaactttgttaaaaaaatgggGTT
AATATGTAGGGAAGTATGATAATCGGTATGGTTCCAGACTACCGTATTAT
TACTTTGGTTTTTTAAGAGAAGCGTTTATTAGAGGggcattttattttga
agtaatACAGAGAGAATAATGCATGAACTCTGAGGTGTGCACTTTTGGTT
TTTGATTTACATCTCATTTTTTTACGATTGTAGCGCTGTTTTCTTTAGTA
CAATTGATTTCAAACCTATTTCGATCCCTTTTATTTTTAGACTGAATTCT
AATGGAGTATCGAAGGTTGACAAGATTTTActcaaagattttttgattgC
AGCCAACGTGTCTTTAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGC
GTACCTTTCGTCAAAACGGTTTAATACTTCATGTCTCGATCATGTATAAA
AATTCTGAGAAAATGTTGTATGGCGTCAAGTAAGGAAtacaaaacatttt
atttttattttttttgaaggtATTATTTTCGGGTACTCTCAGGTTCCAAA
TAAAATTGAGGTACGATAAAGAGTACTCGTATGGATCACACatacagatg
agatggagtttttataagatactttaataattggtcatttgatgtaataa
aaattggCGTTCTTTGNTTCCAGACTACCGTATTATTACTTTGGTTTTTT
AAGAGAAGCGTTTATTAGAGGggcattttattttgaagtaatACAGAGAG
AATAATGCATGAACTCTGAGGTGTGTACTTTTGGTTTTTGATTTACATCT
CATTTTTTTACGATTGTAGCGCTGTTTTCTTTAGTACAATTGATTTCAAA
CCTATTTCGATCCCTTTTATTTTTAGACTGAATTCTAATGGAGTATCGAA
GGTTGACAAGATTTTActcaaagattttttgattgCAGCCAACGTGTCTT
TAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGCGTACCTTTCGTCAA
AACGGTTTAATACTTCATGTCTCGATCATGTATAAAAATTCTGAGAAAAT
GTTGTATGGCGTCAAGTAAGGAAtacaaaacattttatttttattttttt
tgaaggtATTATTTTCGGGTACTCTCAGGTTCCAAATAAAATTGAGGTAC
GATAAAGAGTACTCATATGGATCACACatacagatgagatggagttttta
taagatactttaataattggtcatttgatgtaataaaaattggcgttctt
tagaaaaaataagaaaatcgtTTTATTActgttaacgaccaaccaaatca
attaagagcttgtaaaaactccatctcgtccccacACATACCCGTCACGT
CCCCGAAGTGCATTTTTTAATACTCGTTTTTCAAGGGTTTGCCTAACTTT
CTATTTAGTATTCCTGAATATACGTACCATGTCAGAAGAGTACCGTTTTC
CGATTATCGCTTGAAACAAGAAATTCCTATTGCTAATAATGAGGGAAATA
TTTGTGAACGAATCATCAAGAAACGATATGCTGTTAGAATTGAATTTCAC
CAAGGAGGAAAAATTGGTAAGGTATTTATTGATATAatgtgttgttgttt
ttttaagtttaatctTCACGGTCGTACAGTTTATTCTGCTTTTGTCATCC
GCACATTTGCTAAAATGTATTGTACGACTTTACTCCATGTTTGCTGCGAT
AGAAACGACTAAAATGGGATAAATGTTTGTGAGCATCATTGTGCTTATGA
TTAGTAGAAATAGAGAACGATTAAATTAAAAGCTTGGGAGTTTCtacttt
tctgaaatttcatagATTCTTGAAGCATAGCATTTGTGTATGTTTTTACA
GCATTTCATTTTTGGCCAGATTTGATTACAAAATTTGttcaatttgacaa
aaaatttactTCGCTCCGACTCAAGTCAAATCTATAAATTATTGGATTTG
TCTTTTTATCTTATATTTTCTAGGTCAATTTTCATCAGCAAATCTAGTCT
TCCAATTGGTTTCAGTGATGGGTTTGTTAACACTGACAGCAACGGTTATT
GATGTTATAGCTCTTTATATTGTTCCAAACAAAGATAATTATAGGCAATA
CGTTTTTGATGAATCACCGGAATTTTCAGAGCAAGAAAAAcaaactttga
aagaaaatgtaaaTGATGAACAATCGAAGAAAGAtcaatgaaattatttt
tagaCGCTATTCGAATTTTGAATATCTATTGTAACAGGTGGGGGGGGGCA
TTCAAAAAATCTTATCTTATTcttctatgaaatgaaatttttaatttttt
tttgaaaaattagaacGCTTCGATGTTTTAGTATTGACCCCACTTCCACg
aatgtatttgtttttaattttgagaattttgaatATCTATAGTAAGACTG
GGTCATTTTGAATAAAGGGAGAAATCTGACTTAATTCGAACTCGCTCTGC
CCGTTTAAAGGCAATAACCCTTTGTTTGGCTAAAAATTggttatttttca
tctttcaaaagGCTTTTCCATTTTCAAGGTTATTTTAGCGTGTTTGAATG
ATAGGCGATCAAAGCACTTCTCCAGCTAAAGGCTATGGAAAACCTTGGAG
ACAAGTTAGAGGAGGGGATGTCAAGAAATTGGTGTGATCCCATCCGCACT
ATAGGCAGAAAGTTATAGTTTCAAAGAGGAGATGGATTTAGTAAATGTTT
AAACTTTTTGATCACTACTGGCCATTGATATATCGATAGTGACTTTTCAA
CGAATTATAACGAGATCAAGTATGTAAGGTTTTCAGAAAGTAGTTCAATG
CAACAGAATTTAAACCAATTCCATCCACCTtaaaaagtatccaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007123XLOC_007123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012679-exon-sc0000147-1491911889:234352..234809TCONS_00012679-exon-sc0000147-1491911889:234352..234809Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1510915933:234352..234809TCONS_00012679-exon-sc0000147-1510915933:234352..234809Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1575043694:234352..234809TCONS_00012679-exon-sc0000147-1575043694:234352..234809Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1491911889:235523..235806TCONS_00012679-exon-sc0000147-1491911889:235523..235806Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1510915933:235523..235806TCONS_00012679-exon-sc0000147-1510915933:235523..235806Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1575043694:235523..235806TCONS_00012679-exon-sc0000147-1575043694:235523..235806Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1491911889:236046..236189TCONS_00012679-exon-sc0000147-1491911889:236046..236189Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1510915933:236046..236189TCONS_00012679-exon-sc0000147-1510915933:236046..236189Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1575043694:236046..236189TCONS_00012679-exon-sc0000147-1575043694:236046..236189Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1491911889:237178..237366TCONS_00012679-exon-sc0000147-1491911889:237178..237366Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1510915933:237178..237366TCONS_00012679-exon-sc0000147-1510915933:237178..237366Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1575043694:237178..237366TCONS_00012679-exon-sc0000147-1575043694:237178..237366Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1491911889:237710..237867TCONS_00012679-exon-sc0000147-1491911889:237710..237867Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1510915933:237710..237867TCONS_00012679-exon-sc0000147-1510915933:237710..237867Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1575043694:237710..237867TCONS_00012679-exon-sc0000147-1575043694:237710..237867Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1491911889:238275..239148TCONS_00012679-exon-sc0000147-1491911889:238275..239148Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1510915933:238275..239148TCONS_00012679-exon-sc0000147-1510915933:238275..239148Clytia hemisphaericaexon
TCONS_00012679-exon-sc0000147-1575043694:238275..239148TCONS_00012679-exon-sc0000147-1575043694:238275..239148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:234352..239148 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.365	17.0795	17.1536	16.2852	4.43651	3.29664	4.21757	4.80337	3.5756	3.27782	3.14365	2.65161	2.60442	3.15657	6.07653	6.14517	4.6727	4.81814	4.36151	5.35413	4.5272	4.28419	9.36582	9.65475	2.27783	2.20306	7.12533	6.22298	10.4979	9.53313
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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