TCONS_00012673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012673
Unique NameTCONS_00012673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012673 ID=TCONS_00012673|Name=TCONS_00012673|organism=Clytia hemisphaerica|type=transcript|length=480bp
AAAAAGACCAATTAGATGCCTAAACTTACTTATTTGCAGCAAAATATTCC
TTGCACATTTCCAGGATCTTTCCGTTGGCAAAAATAGCGAATGAATGCGT
GGACTACGGTCTTGTTATTGACCGCAAAGTAAATTGAAGTTACTTTTTTC
TTGGTGGCCAGTGAcccttgaaacacccttgatttttttctacccttgaa
aatttccttgaaaCTCTTGAAGAAAATATGATGATTTTCTGAAGACCCTT
GAGCTATGAAATTTACCTCCTTGAAACACTTGAAATTCAGAAACCTGGAA
GGGATTTTTGTTCATCAAGaaatttttaagtgaaaaattttctccacTTC
GTGTGGATAAAAGTataaaaagcctaaaaagtcGCATGAAGAAATTGAAA
CTATAAAGAAGCCTGAAATAACATGATCGTTTTAGACAGTGGCGTGGTTG
CAGGAGAGGCCAGGGCTGCCCAGGCGCCAA
Run BLAST on NCBI

transcript from alignment at sc0000146:452292..452771

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012673 ID=TCONS_00012673|Name=TCONS_00012673|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0000146:452292..452771 (Clytia hemisphaerica)
TTGGCGCCTGGGCAGCCCTGGCCTCTCCTGCAACCACGCCACTGTCTAAA
ACGATCATGTTATTTCAGGCTTCTTTATAGTTTCAATTTCTTCATGCgac
tttttaggctttttatACTTTTATCCACACGAAgtggagaaaatttttca
cttaaaaatttCTTGATGAACAAAAATCCCTTCCAGGTTTCTGAATTTCA
AGTGTTTCAAGGAGGTAAATTTCATAGCTCAAGGGTCTTCAGAAAATCAT
CATATTTTCTTCAAGAGtttcaaggaaattttcaagggtagaaaaaaatc
aagggtgtttcaagggTCACTGGCCACCAAGAAAAAAGTAACTTCAATTT
ACTTTGCGGTCAATAACAAGACCGTAGTCCACGCATTCATTCGCTATTTT
TGCCAACGGAAAGATCCTGGAAATGTGCAAGGAATATTTTGCTGCAAATA
AGTAAGTTTAGGCATCTAATTGGTCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007117XLOC_007117Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012673-exon-sc0000146-1491911889:452292..452771TCONS_00012673-exon-sc0000146-1491911889:452292..452771Clytia hemisphaericaexon
TCONS_00012673-exon-sc0000146-1510915933:452292..452771TCONS_00012673-exon-sc0000146-1510915933:452292..452771Clytia hemisphaericaexon
TCONS_00012673-exon-sc0000146-1575043694:452292..452771TCONS_00012673-exon-sc0000146-1575043694:452292..452771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:452292..452771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.130914	0.127662	0.592911	1.01512	0	0.139508	0	0	0.110319	0.546591	0	0.523129	0.261201	0	0.148675	0	0	0.100731	0.278329	0.291252	0.253151	0	0	0	0.281114	0.376331	0	0	0.145305	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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