TCONS_00012672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012672
Unique NameTCONS_00012672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012672 ID=TCONS_00012672|Name=TCONS_00012672|organism=Clytia hemisphaerica|type=transcript|length=387bp
CTTAACCAATCCATATTTTCAAGGCTGTTTGTTAGCATTCTATCACAAAA
TCTTCGATTTATCACTTCAATCGGAGACTTCTATACACATTCATAANAAA
ATAATTCGGCTTCCCCGGTGACTAATTTACAGACTAGCAAAATCTCACCT
GGCATCTCCTACATTCTCTGGTCTGTAATTTGCACCAACATGCTTCTGTT
ATCATTCTGTTTTATATTTTCCGGTCTGTATAATTTAGAAATCTAGAATG
CAAAACTTAACACACTAATGGCTGcttcatgaaattttgaatgCTTCTTG
CTCATTTTCCACCAATTATGNgtttatttatttatttgtaagaattGTTT
GTAGATAGGAAAGAAAAACCGAGTATGAACTCCTAAT
Run BLAST on NCBI

transcript from alignment at sc0000146:447314..447700

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012672 ID=TCONS_00012672|Name=TCONS_00012672|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0000146:447314..447700 (Clytia hemisphaerica)
ATTAGGAGTTCATACTCGGTTTTTCTTTCCTATCTACAAACaattcttac
aaataaataaataaacNCATAATTGGTGGAAAATGAGCAAGAAGcattca
aaatttcatgaagCAGCCATTAGTGTGTTAAGTTTTGCATTCTAGATTTC
TAAATTATACAGACCGGAAAATATAAAACAGAATGATAACAGAAGCATGT
TGGTGCAAATTACAGACCAGAGAATGTAGGAGATGCCAGGTGAGATTTTG
CTAGTCTGTAAATTAGTCACCGGGGAAGCCGAATTATTTTNTTATGAATG
TGTATAGAAGTCTCCGATTGAAGTGATAAATCGAAGATTTTGTGATAGAA
TGCTAACAAACAGCCTTGAAAATATGGATTGGTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007116XLOC_007116Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012672-exon-sc0000146-1491911889:447314..447700TCONS_00012672-exon-sc0000146-1491911889:447314..447700Clytia hemisphaericaexon
TCONS_00012672-exon-sc0000146-1510915933:447314..447700TCONS_00012672-exon-sc0000146-1510915933:447314..447700Clytia hemisphaericaexon
TCONS_00012672-exon-sc0000146-1575043694:447314..447700TCONS_00012672-exon-sc0000146-1575043694:447314..447700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:447314..447700 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.797253	0.583085	0	0.441571	0.806355	0.637192	1.02499	0	0.335915	1.04021	0	0.663707	0.662785	0.412985	0.67906	0.242912	0.598495	0.153359	0.211874	0.221711	1.73437	2.2559	2.28529	1.66212	1.49796	1.90984	1.09319	1.45835	0.442444	1.80312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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