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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012635 ID=TCONS_00012635|Name=TCONS_00012635|organism=Clytia hemisphaerica|type=transcript|length=1574bp
CTTTCGAAGAGTGATATTGTGcgatttaaaACAACAAGAACAGCAAAAAG
AAATACCATCAACAGATACcaacaacaagaagaagaaaatgtacGAGCAA
TCTTTGGATGCTGAATATTTTCATCCATCATACAACAACATGTACCACCC
TGAATCGCAACATTTTTACGACGACTATAACAATAACAACAATTATATTA
AAAACCACCCTTCGGTACCATCACCGCCCTACCTTCCAACACCACCATCC
ACACCGGACAAAATCCCAATGAGTTATGGTAATTTTAACCACCCTGTCGC
CTCTGCACCACCGCCCTACATGACATCGCACAGTTATCATCATCAAACAT
CGACACAGAATAACCAGTTCAGTCCAACATGCGATATGCAAGTTGTTCCT
GATTTCTTTGGAGGGAAAGATGACGAAAATATCAACCATGAAGtACACCA
CCCTTACGCCAATCACCACCTCGATGAGAATTACAATCCAACCGCCACAC
CGCCCCACTATCTGCATTTACAACCGACACACCAACAACACAACAATGAA
ATGCCCGATATCGGTCAAAAACGAGTCTACAATAGCATCAATCACAATGC
GCAAAGTCCCATCGATTTTTACATGACCAATAGCAATCATGAGAATAACT
ACATCCGACAACAAATGGCCTACGAGGCAATGTTCCACGGCCATCCGGCC
ATGAAGCGCCAAAGATACGACTCTCACGAAACGATAGAGCCAGAACTAAG
TCGCGCGACACATAATATCCTTGAACGCCAAAGAAGAAACGACTTGAAGT
TACGCTTCAGTATTTTAAGAGACAATATACCAGAATTAGCCAGCCATGAG
AAAGcaccaaaaattcaaattttaagaaaaggaCTTGAGTATTTGACCAT
CCTAAAAAGTGAAGAACAAAAATTAATAGCTGACAAAGAACTCGAAAAAC
AAAGGAAGCTGATTTTAATGGAAAGGTTGAAGACGCTACGACAGAGTAAT
CattaagaattttatttatttttttcagagatATATTTTAACTGAAGGTC
CCAATTAATCCTAACGTTCTTTGATTACAGTTTTAAGCCTTTAAGGCTAA
TATGTTTTGCAAAGAAAATTTGCCCAGTAGAGCTACATCCTACTCTTGTA
TATCCGACGCGGTGGGCAACCCAAACCACTTTCAAATCGAGCAAGTACTT
TGTCTTAGAActtctttgtaaaaagttttcgattggggctttattttatg
attttttggcaatttcttcagacattcttttttttaaagatcttaTATTA
TTGTATATGTTTGTACTATTTTTATTAAAGAGAGAAAACACAATTTTAAA
AGTCAGTATATTATTAGGTTTATTTCGCCTTAAAATTTGGGgaaataaca
ttttaaggctctatTTTCACGAGCTTATATTACAGTactgatttttttga
agatgtATTTAATATTTTACGCGAAGAGatattgaaatcatttttgtacA
TATTGTATCTTTTGTTATATTATTTTGATCTTagtttttacagaaaaaga
tAGATTAAAGCAGTCACCTTTAAT Run BLAST on NCBI transcript from alignment at sc0000146:270219..274561+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012635 ID=TCONS_00012635|Name=TCONS_00012635|organism=Clytia hemisphaerica|type=transcript|length=4343bp|location=Sequence derived from alignment at sc0000146:270219..274561+ (Clytia hemisphaerica)
CTTTCGAAGAGTGATATTGTGcgatttaaagttttttaatttatacAACA
ATCAGCTCTAATATTTTAGGGTATTACTTAAATTTGCTACCATATCATAG
CATATTGTTTTGgaattatgtttttttcttaattttcaactattttttga
tTCCAGACAACAAGAACAGCAAAAAGAAATACCATCAACAGATACcaaca
acaagaagaagaaaatgtacGAGCAATCTTTGGATGCTGAATATTTTCAT
CCATCATACAACAACATGTACCACCCTGAATCGCAACATTTTTACGACGA
CTATAACAATAACAACAATTATATTAAAAACCACCCTTCGGTACCATCAC
CGCCCTACCTTCCAACACCACCATCCACACCGGACAAAATCCCAATGAGT
TATGGTAATTTTAACCACCCTGTCGCCTCTGCACCACCGCCCTACATGAC
ATCGCACAGTTATCATCATCAAACATCGACACAGAATAACCAGTTCAGTC
CAACATGCGGTAAGAAAGATTtcgaatttatgaaatttttactgtacacg
ttgtttttttatgagaacatccaaaactttttgattttaaagcctATAAA
TGCTCTTTAAACATGTTATTTTCCcatttttgtgagtattttttcgCATT
TTCccaggcacgacgcaacgggtacggcaggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNaaatacccgaagttttcctcttcgtcggtaaactcg
ctataaaatcgcttaaatttcctcattcgccgtaccagatataaaaagct
tccgtcgtgcctgattttcctaagaaatcgggtgttttagagtcccctTA
ATGTCGCAAATTGCCTTTTTAACACTTTGCTCCTCGAAGCcccatgttct
tatataaaaaacttgTTCAGTATTCAAAATCAGAATCTTTTGCTTTGGTG
CATTTTGGTGCATACTGTAACGAAATTCATCGAAATTTAGCATCGTTAGA
CATGAAGAGTGAATGAATTATTCCATTTTTCATCTCAGATATGCAAGTTG
TTCCTGATTTCTTTGGAGGGAAAGATGACGAAAATATCAACCATGAAGGT
AAGCATTCTCAAACCTTTTCTATAAGAAATACATAGTGGAAATGTTGTTC
TGAAGGAACAGGGGAGGCTTGCACCCTTCaaagtttttatataaaaacca
GTGGTATTATCTCTCTCATATTTTCTTTGTGTCTTCTTTTAATCGAAGTA
ACAAgataatagtaataataatcAGAGTTAAACAAAAGAGATGTCAAGCC
GAGACACCTGGCTATAATCGCCTCAGtaatattaaaaaagaaatgaaaaa
gagaatcaataaaaagaaaataaagaaaagaattaATAGTTGTCAAAAAT
GATATTAACTGAACGGACGGTGTTTTTAcgtcaagaatttttttgaaatc
atgaCAAAACCAGCTGATTCTTCGACCTCTTGAGGTTTTAGGccttctgc
tgttttttgcccCTAAATTGCTTATTTTGTGATCAAAAACCTGGCGACTA
CATTCCATATTTTCGATGAATTCAAAGAGATAATATTTAATAGGTCTTAA
TTGGTCGAAGGTGTAAATTATAGGAAGTCAAAAATAATCTCTTTTCGAGC
GGTGATCTTACAATTACAATTTTCTTTTacttaaaatcgaaataaaattg
atttatcaTCACTGTTTCAAAAACCTTCGGACGAAAAGATTTTTCGAAAG
CGGCGAATTTAAAGTTTGAGGTTTTTCTACTATAAAAATTGTTGTGTGAA
AAATGTTTTATACTATTTTCTACAAATAATAAAACGTCGGTAGAATTTTT
CACACACAAAAATAGAACGGTCTATCTATTCTTGTGCCTGGCACCTAAAA
AATCGATAACAAGTCTTCAATTACGTTTATATAGttaaagaatttatttt
tagGCACCCGAAAACTTAAAGCCTTTTACATATagatatttgaaaccatt
ttttaaGGGTTTTCAAAACCGCTAGTATTAAAATTGGGGTAAAGAAATCA
TATTCTATTTGGCGATGCCGTCTAAAAGGGTACGCTCTACGGGATATCAG
ACCTCTTGTAATCTAGATTTCTTCACTCTcaaaaaagaaatcttcaaaaa
taaaaggggctcataaaaatgaaaatatacttATTTATAACCAGCAGGAA
ATAGCGgttaaaataaacaaactaaaattcaaaatataggATTTTCGTAA
AATCCTTGggggaaaaaatctaaaacttcTATTTTcacaccaaaaaaaaa
ttaacaagtaaagatttgatttgaaaataaggaaaagaAGAAGATGATAG
CGTCATCAATTTGACGTCATAACAAATATTTGATTCAGTGTTTCTGATAT
GTGCTGATTTAGCACTTTCACATAATAAGGGCGGCTTTTCGCTCCATCAA
TATTTTGCGATTTTcgtaaataattttgaaatggcagctgacttcttttt
tttttctggagagaaaaaatccaaaagtAAATTATCACCTCCCTATGAAA
CTTCAACCATTTGATTCATCAGTGATAATATATTTTATCGTTTGTTTGAC
GCTCTTGACTTTTCTTCTTTCCTCCGGGAAATAAGACCCCTTTCTACAAA
CATGTATAATTTTACAATGTAAAAAAACCGTTAAGTTTTTATATAACAGC
TGATTATCAGAAACATTACATAATGACGTATTATCAGCCTCAGTTTCGTG
ACACACGAATTTGGGGCAATTTTAACCCTTTAGAACGACACTTTCACAAT
TTATGTACTCGTACATATAATGCTGCATATATTTTcgaaaagcttttttg
ttttataCCTCTTCAATAAACTTTCATAATTGAAGGGATGGATAtattaa
tcaaaattttcttttctttttctttaNCACAATTTATGTACTCGTACATA
TAATGCTGCATATATTTTcgaaaagcttttttgttttataCCTCTTCAAT
AAACTTTCATAATTGAAGGGATGGATatattaatcaaaattttattttct
ttttctttatagtACACCACCCTTACGCCAATCACCACCTCGATGAGAAT
TACAATCCAACCGCCACACCGCCCCACTATCTGCATTTACAACCGACACA
CCAACAACACAACAATGAAATGCCCGATATCGGTCAAAAACGAGTCTACA
ATAGCATCAATCACAATGCGCAAAGTCCCATCGATTTTTACATGACCAAT
AGCAATCATGAGAATAACTACATCCGACAACAAATGGCCTACGAGGCAAT
GTTCCACGGCCATCCGGCCATGAAGCGCCAAAGATACGACTCTCACGAAA
CGATAGAGCCAGAACTAAGTCGCGCGACACATAATATCCTTGAACGCCAA
AGAAGAAACGACTTGAAGTTACGCTTCAGTATTTTAAGAGACAATATACC
AGAATTAGCCAGCCATGAGAAAGcaccaaaaattcaaattttaagaaaag
gaCTTGAGTATTTGACCATCCTAAAAAGTGAAGAACAAAAATTAATAGCT
GACAAAGAACTCGAAAAACAAAGGAAGCTGATTTTAATGGAAAGGTTGAA
GACGCTACGACAGAGTAATCattaagaattttatttatttttttcagaga
tATATTTTAACTGAAGGTCCCAATTAATCCTAACGTTCTTTGATTACAGT
TTTAAGCCTTTAAGGCTAATATGTTTTGCAAAGAAAATTTGCCCAGTAGA
GCTACATCCTACTCTTGTATATCCGACGCGGTGGGCAACCCAAACCACTT
TCAAATCGAGCAAGTACTTTGTCTTAGAActtctttgtaaaaagttttcg
attggggctttattttatgattttttggcaatttcttcagacattctttt
ttttaaagatcttaTATTATTGTATATGTTTGTACTATTTTTATTAAAGA
GAGAAAACACAATTTTAAAAGTCAGTATATTATTAGGTTTATTTCGCCTT
AAAATTTGGGgaaataacattttaaggctctatTTTCACGAGCTTATATT
ACAGTactgatttttttgaagatgtATTTAATATTTTACGCGAAGAGata
ttgaaatcatttttgtacATATTGTATCTTTTGTTATATTATTTTGATCT
TagtttttacagaaaaagatAGATTAAAGCAGTCACCTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012635-exon-sc0000146-1491911889:270219..270248 | TCONS_00012635-exon-sc0000146-1491911889:270219..270248 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1510915933:270219..270248 | TCONS_00012635-exon-sc0000146-1510915933:270219..270248 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1575043694:270219..270248 | TCONS_00012635-exon-sc0000146-1575043694:270219..270248 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1491911889:270375..270727 | TCONS_00012635-exon-sc0000146-1491911889:270375..270727 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1510915933:270375..270727 | TCONS_00012635-exon-sc0000146-1510915933:270375..270727 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1575043694:270375..270727 | TCONS_00012635-exon-sc0000146-1575043694:270375..270727 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1491911889:271407..271466 | TCONS_00012635-exon-sc0000146-1491911889:271407..271466 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1510915933:271407..271466 | TCONS_00012635-exon-sc0000146-1510915933:271407..271466 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1575043694:271407..271466 | TCONS_00012635-exon-sc0000146-1575043694:271407..271466 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1491911889:273431..274561 | TCONS_00012635-exon-sc0000146-1491911889:273431..274561 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1510915933:273431..274561 | TCONS_00012635-exon-sc0000146-1510915933:273431..274561 | Clytia hemisphaerica | exon |
| TCONS_00012635-exon-sc0000146-1575043694:273431..274561 | TCONS_00012635-exon-sc0000146-1575043694:273431..274561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:270219..274561 + |
Blast
BLAST of TCONS_00012635 vs. Swiss-Prot (Human)
Match: MYC (Myc proto-oncogene protein OS=Homo sapiens GN=MYC PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.264e-19 Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 2
Query: 632 SNHENNYIRQQMAYEAMFHGHPAMKRQRYDSHETI-----------------EPELSRATHNILERQRRNDLKLRFSILRDNIPELASHEKAPKIQILRKGLEYLTILKSEEQKLIADKELEKQRKLILMERLKTLRQS 997
S H++NY A + +PA KR + DS + E + R THN+LERQRRN+LK F LRD IPEL ++EKAPK+ IL+K Y+ +++EEQKLI++++L ++R+ L +L+ LR S
Sbjct: 303 STHQHNY----AAPPSTRKDYPAAKRVKLDSVRVLRQISNNRKCTSPRSSDTEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLRNS 437
The following BLAST results are available for this feature:
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