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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012625 ID=TCONS_00012625|Name=TCONS_00012625|organism=Clytia hemisphaerica|type=transcript|length=4500bpRun BLAST on NCBI protein sequence of TCONS_00012625-protein >TCONS_00012625-protein ID=TCONS_00012625-protein|Name=TCONS_00012625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=946bp MSYTKNDGISVSIQNLDLGDGDYDSDENDDWMFTSNVPIKTITSNSNNADRun BLAST on NCBI transcript from alignment at sc0000146:206545..244840+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012625 ID=TCONS_00012625|Name=TCONS_00012625|organism=Clytia hemisphaerica|type=transcript|length=38296bp|location=Sequence derived from alignment at sc0000146:206545..244840+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000146:206545..244840+ >TCONS_00012625 ID=TCONS_00012625|Name=TCONS_00012625|organism=Clytia hemisphaerica|type=CDS|length=56820bp|location=Sequence derived from alignment at sc0000146:206545..244840+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012625 vs. Swiss-Prot (Human)
Match: MUT7 (Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3) HSP 1 Score: 197.978 bits (502), Expect = 8.935e-52 Identity = 202/694 (29.11%), Postives = 318/694 (45.82%), Query Frame = 3
Query: 864 KIKHKTLTKIAEKAVKRYQLNPDDFPYIFGAKNVSSLFYLIKMRIAEKNNGGTKAKLMKWDHLIEAAVAGKXXXXXXXXXXXINLGDTELAIEWAKHLHIPPNQLPMIIIDELGLHHLVHKELSSEASGQTRQDTDEHAEEDWESEIENDPSSKTGFSLGKGFYDSEQEKEDL-ESYHQLSLPTSSIHLVDTVKGLVEMTKQLFQDGNVIGFDAEWKPVMCRAGEKEYMSILQLALKDRVYILDIKVLY---TTNGAEDALXXXXXXXXXXXXXXXIGYGITGDMKLIIGMFEYAKEMVKNAESLVDLCGVSQKILPHQMVQNELYNLDNKSLLDKGLSMLVNRTLGKSLDKTFQVSDWERRPXXXXXXXXXXXXXXXXXEVYDRLCYFVKKY----DLNFNXXXXXXXXXXXXXPVGGQQRKDKYDKRENKEKVRLPDNKPLYKGIPR-PSTKLKVVCDTMLQGLGRQLRNCGVDTLILEDGQDHSVALQISHKEKRIILTRGKPFFMIRGYVGEDMVMWVPDGT--PREQVKMVFTRYHIAIRSKDILSRCVDCNSDTYTKIASKEM-QIIFELKHDIG--------------QAEMPAEQLT--GC---------KQVDLSNFT--LCENGVEIQLDFISGTKFERALRTGNWEKLFEDVTTFYVCNCCGKVFWEGSHHKAVKETYADMID 2828
K+ K L++ + +RY + P P + +++L +L R EK+ W ++ V WLQ +L L++ D A + A L +P +LP + EL L + ++EA DS E +D+ + Y+QL +P ++HL+ + + L L Q V+G D EW PV AG + S+LQ+A++ V++LD+ L T GA+ A Q + ++TK+GYG+ GD++ + + K +DL V +++ ++ +D L +GLS+LV + LG +LDKT Q+S+W+RRPL E+Q+ YAA DAYCLLEV+ LC ++ DL + + + + + KP G Q+ R+ V + + P+ P+ +VVCD MLQGL R LR GVD +L +G+DH A +++ +E RIILT G+PF +R VG + V D + ++Q K V +++ + DI SRC CN D Y K++ M Q+++ H G Q PA GC + DL T + +G +QL + LRT + FY C CGKVFW+GSH V + DM++
Sbjct: 231 KLSPKALSRQVLRLQERYGVAPALCPNAAIQQRLAALRHLCHKRFVEKSLSQEN-----WTDHVQGLVGQSPWLQEQLSQLLVSHSDPVTAAQCAMELLLPEERLPAAVAVELRRFRLQGR--ATEA-------------------------------------DSRLEVKDMKDRYYQLPIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFV-AGGRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ-AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAHVEKQILGGMDLLLVHRQM---RVASVPAPAVDRAREL-RGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCREPARFHLSEDLAGSRRPRHRERPGARKPPGLQKASAPAAPRQVPVAVAVSEG-----AAPQIPARAFRVVCDNMLQGLARSLRCLGVDARMLGNGEDHRRAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSV-DCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACNCDQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAPEGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVG----VLRTPG-------LRCFYCCTGCGKVFWDGSHLGRVATHFRDMLE 857 The following BLAST results are available for this feature:
BLAST of TCONS_00012625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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