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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012624 ID=TCONS_00012624|Name=TCONS_00012624|organism=Clytia hemisphaerica|type=transcript|length=510bp
GCGCACCTTCGTACGTTCTATCTTTTTAACTTCTTGCTTCTGAAATTTGG
TTGggagaaattgaattttgatcttTGTAACGTATACTCAAACGTTGCTC
AAAATCTCTCTACTGTACTATGATATTTTCATGTGAAGTTCTGTGTGGTT
TAGCCACCTCACAAATCTTGGTTGTTGgaactttaaaaaagaaaagaaga
agctCTCAGGAAAAACCTAACATATTTTGACAACTGTGACATTACAAAAG
atttaCAACCTATCAAACGTGGTACTTTCTACAAAGAAATCGATCCCTTC
AACTATCTTGATTCCAGTTAGCCGTGCAGACACTTATATAGCTAACAGCC
ATACAGAAAAAAACTCAGCATGCGTCACTGCAGCCAATCAGCTGATGTAA
GGTATTTTTCATTATGTaatttctgctggactacattaTTATTCAACAGA
AcgtcctttttgaaaaaatatctattTTGTGACTATGTTTTAATAATAGC
AGAGTCTGTT Run BLAST on NCBI transcript from alignment at sc0000146:186193..188544+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012624 ID=TCONS_00012624|Name=TCONS_00012624|organism=Clytia hemisphaerica|type=transcript|length=2352bp|location=Sequence derived from alignment at sc0000146:186193..188544+ (Clytia hemisphaerica)
GCGCACCTTCGTACGTTCTATCTTTTTAACTTCTTGCTTCTGAAATTTGG
TTGggagaaattgaattttgatcttTGTAACGTATACTCAAACGTTGCTC
AAAATCTCTCTACTGTACTATGATATTTTCATGTGAAGTTCTGTGTGGTT
TAGCCACCTCACAAATCTTGGTTGTTGgaactttaaaaaagaaaagaaga
agctCTCAGGAAAAACCTAACATATTTTGACAACTGTGACATTACAAAAG
GTAAatttaaaacttaatttttactTACTGGTAACTTTGTAAAAGTATAA
CTGCTTTGGTGTGGCAAGGAAACAATTTTTACCTAGATACACTGCCACCA
agttttcagagcatgtcatgGCTGCCCCCAAGGAAAAATTATAACATTAA
AATCCTGTTCCTAAAATCTGTGAACCCActcaaaaaagcttaaaaagccc
gaaaaagtgacaaaatagGCCGATTTTCAGTGATGTTGCTCTTGAGACTT
TAAAATTATCAAACCCAGCTTTgttccagacggtactaatcgaaggaccc
tcccggcgctccggaaacATCCGGTGCAAAAAGTGCCAATTTTTTCGTgc
accggaacgttccggtgcTTCCGGTGGAAAAATTCTCCGGATCGAGCTGC
ACCGGAACGTTCACGGTGCTTGGTGCATGATTTCCGCGATATAAATCCGA
TAGCGCTCGCTGTGCTAATCATGTAAaaaccagacgatgtcaatcgaacg
aatcgaacgccgaatcaattgaacgcaatcgaacgcaatcgaatgattga
aattcgattgccgaacgcaatcaaatgccaatcgaatattaccgcgattt
tctcgattgattagattgcgttcgattagtgcctggattcgattgattcg
attgatttgattgattcaactacgttcggttggcttatgcattcgactgg
ttcgactaattgattctgttgattaacATTGATTCTCGTTCAACATTTGA
ATAGTTAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcgattgcgtt
cggcaatcgaatcgcaatcattcgattgcgttcgattgcgttcgattgat
tcgattggaattttcgttcgattccgttcgattgacattGTCTGGTAAAA
AGTAACTATACGCACACGCGAATAATCCAAACGATGTTCCCATGTGTGAt
gcggtcgtggcttcttcataaCCTCGAAAGTCATATCTTGACTTGTTTCG
TATTTTCCAGTCTctgatttgatatttttctgatGTTCTGGgactttgtg
agttattttctatgtttttcaactTATTGTTGAATGCTTGTTGAATGACT
TACCGaaagatcgccaccggtgggattcgaacccactaaatgcaaagttc
tgtTGATCAGAAACctaatgccttatccactgcgccacggattcatatAG
TTTCtcacggctatttatattgtataaACCACAGACCATATTATATTAAG
CAGTCTAATCGACATCCGAATACGAAAAGGTTGCTGTGGCAGAATTGGGG
TACAAATGAAcgtgggggttggaaatttaataatttttcaaaaatgtata
gtccgtgggggttggaaaatttttgaaaaattaataAGCGTGGGGGCACG
TTTATTAGGCACCTGAGAGTACACAGGTTCAAGGTTGATCGAGACAAAAG
CTGGTGTTTATTGTTTCTCacttattttttcagatttaCAACCTATCAAA
CGTGGTACTTTCTACAAAGAAATCGATCCCTTCAACTATCTTGATTCCAG
GTGAGTAGCAATGAGAAATACCTTACATCAGATGATCAGCCGCAGCGACA
CAAGctgagttttttctttacaacTGTTTACCCTATACAAGTGTCCGTGC
GGCAAACTTAAAAGTTAGGTTTTGAATTCGAGACCTGATGATGTATCTCC
ATTTTCTAGTTAGCCGTGCAGACACTTATATAGCTAACAGCCATACAGAA
AAAAACTCAGCATGCGTCACTGCAGCCAATCAGCTGATGTAAGGTATTTT
TCATTATGTaatttctgctggactacattaTTATTCAACAGAAcgtcctt
tttgaaaaaatatctattTTGTGACTATGTTTTAATAATAGCAGAGTCTG
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012624-exon-sc0000146-1491911889:186193..186442 | TCONS_00012624-exon-sc0000146-1491911889:186193..186442 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1510915933:186193..186442 | TCONS_00012624-exon-sc0000146-1510915933:186193..186442 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1575043694:186193..186442 | TCONS_00012624-exon-sc0000146-1575043694:186193..186442 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1491911889:188126..188192 | TCONS_00012624-exon-sc0000146-1491911889:188126..188192 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1510915933:188126..188192 | TCONS_00012624-exon-sc0000146-1510915933:188126..188192 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1575043694:188126..188192 | TCONS_00012624-exon-sc0000146-1575043694:188126..188192 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1491911889:188352..188544 | TCONS_00012624-exon-sc0000146-1491911889:188352..188544 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1510915933:188352..188544 | TCONS_00012624-exon-sc0000146-1510915933:188352..188544 | Clytia hemisphaerica | exon |
| TCONS_00012624-exon-sc0000146-1575043694:188352..188544 | TCONS_00012624-exon-sc0000146-1575043694:188352..188544 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:186193..188544 + |
Blast
The following BLAST results are available for this feature:
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