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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012618 ID=TCONS_00012618|Name=TCONS_00012618|organism=Clytia hemisphaerica|type=transcript|length=2292bp
aaaaagtatgcgaattgcaacttgtcttttgtttgtaagaaaagaaaatt
gaacaaaaagctaaaacaatacattgccagaccggggttttttataatga
ctatgcttTTACAATGGCTTGTACTGATCCTTCTTCTTTTAAACAGACAT
GGCTAAAAAATCAATTAACTTCAACACAATCACTCTACAAGAGCTTGAAA
AGATCCCTGGTATTGGAAAGTTTAAAGCCCAATCACTGGTTGATGAACGA
AACCATAGATTGTTTAAGAACATAAATGACTTGATCAAAGTTGAAGGACt
cactttgttatttttaaacagACTTCAGAACAAATTTGACTTTATTTTCG
ATACACAATCACCATGCAAAACAAATGCTCTAAAAAGGAAAACCGAAAAT
GTAGATACTTCAATTGATGAAAAAGACAATGGGATCACAACACCAGAGAA
GAAAGCCAGACCAAAATATAACAATAAATGTGCTTCAACTTCCAGCTCAA
AGATTGTCCCAAATGTGGAGAATGCTCTTTGTAATAGAACTATACCTTCA
TGTGATAGTCCTGGAAAAGCAGTACGTAGTAGGCTTCAATCAGAAACAGC
TAAGCCACCTGATGGACTTCCAGATTGGTTGAATAAATTCCATGACTGGT
CCAGAGATGAGAGATTGATTGCGTTAAATGACTTGATAGGTTTATGTGAT
ATGTCGGTCGTCAGACACATGATGGCCAAAATTGAGCCACATTTTCAAAG
GGAttttatatctttattaccAAAAGAGTTGGCACTCTATGTTTTATCTT
TCTTGGAACCAAAAGATTTATCAAATGCTGCAAGGACTTGCAGATATTGG
AGGATCCTTGGAGAAGACAATCTGTTATGGAAGGAGAAATGCCATGAATA
TCAGTTATTTTATCCTCTAAGTGATCTTTTAGAAGAAGGAAAGGTTGATA
AGAAGGCATCACAACCTAATGAGGCACCTTACAAAGAACTTTTTGCTTAT
TGTCACAAATTGGAGCGGAATTGGAGGTCAAACACTTTGAGGCCTGTCAT
GTATTTAAGAGGTCATGATGATCATGTTGTAACTTGCTTACAGTTCGACG
GTGTTCGTATAGTCAGTGCCTCAGATGATAATACGTTAAAAGTGTGGTCT
GCTGATACTGGAACTTTGATTCGCACCCTTGTGGGACATACAGGTGGTGT
GTGGTCATCACAATTAAGTGGAAATATAGTTGTGAGTGGCTCAACAGACA
GGACGCTGAGGGTCTGGAATGCTGATTCAGGAGAATGTATCCATGTTTTA
CAAGGTCACACATCAACTGTTCGTTGCCTGGCAATGCATGGAGATAACGT
AGTAAGCGGATCCAGAGATGGAACTCTACGTGTCTGGGATGTCATGAAAG
GAACACATCTTCATGTTTTGATTGGTCATGCAGCTGCTGTCAGATGTGTA
CAATACAATGGTAAATACGTTGTCAGCGGTGCTTATGATTATTTGGTAAA
AGTTTGGGATGTTGAAACAGAGACTTGTTTGCATACTCTGACTGGTCATT
CAAATCGTGTCTACTCATTACAGTTTGATGGTAAATACATCGTGTCTGGC
TCTCTGGATACTTCGATACGTGTTTGGGATGCTCTTAGTGGGCAGTTATT
ACACACACTCTTAGGTCATCAATCTTTGACTAGTGGAATGGTGTTGAAGA
ATAATTACTTAGTATCTGGGAATGCAGATTCTACTGTAAAAATCTGGGAT
ATTGTGTCTGGACAATGTTTACATACTTTAACTGGTCCCAATAAACATCA
AAGTGCTGTGACTTCTTTACAATTCAATACTAAGTTTGTGGTTACTAGTT
CTGACGATGGATCAGTGAAATTATGGGATCTAAAGACAGGAGAATTCCTT
AGAGACTTGGTTGAATTAGATTCTGGAGGATCTGGCGGTGTGGTTTGGCG
TgtcaaatgcaatgaaaagaaACTTGTATGTGCAGTTGGTAGCAGGAATG
GTACAGAGGAAACTAAACTGTTAGTGTTAGATTTTGATATTCCCTCTATA
CAATTTACGTGATTTCAAACTATGATTAATGGGTTGTCCTTGGCATTATA
CTAAGAAATTTGTATCCACTCACATGTAGCTTAGATCACCAGTCTTCCTA
TGCGAATATAGGGAGATtgtttaaagtttctttttcatCAGTTATTCAAT
AAATCCTTATTATATTCGTTTATTCagaatttatcaattttttatatGTT
AATTTTATATTAATGTTATAGTAGATGTGCATTTGCTCTTCT Run BLAST on NCBI transcript from alignment at sc0000146:134499..139860+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012618 ID=TCONS_00012618|Name=TCONS_00012618|organism=Clytia hemisphaerica|type=transcript|length=5362bp|location=Sequence derived from alignment at sc0000146:134499..139860+ (Clytia hemisphaerica)
aaaaagtatgcgaattgcaacttgtcttttgtttgtaagaaaagaaaatt
gaacaaaaagctaaaacaatacattgccagaccggggttttttataatga
ctatgcttTTACAATGGCTTGTACTGATCCTTCTTCTTTTAAACAGACAT
GGCTAAAAAATCAATTAACTTCAACACAATCACTCTACAAGAGCTTGAAA
AGATCCCTGGTATTGGAAAGTTTAAAGCCCAATCACTGGTTGATGAACGA
AACCATAGATTGTTTAAGAACATAAATGACTTGATCAAAGTTGAAGGACt
cactttgttatttttaaacagACTTCAGAACAAATTTGACTTTATTTTCG
ATACACAATCACCATGCAAAACAAATGCTCTAAAAAGGAAAACCGAAAAT
GTAGATACTTCAATTGATGAAAAAGACAATGGGATCACAACACCAGAGAA
GAAAGCCAGACCAAAATATAACAATAAATGTGCTTCAACTTCCAGCTCAA
AGATTGTCCCAAATGTGGAGAATGCTCTTTGTAATAGAACTATACCTTCA
TGTGATAGTCCTGGAAAAGCAGTACGTAGTAGGCTTCAATCAGAAACAGC
TAAGCCACCTGATGGACTTCCAGATTGGTTGAATAAATTCCATGACTGGT
CCAGAGATGAGAGATTGATTGCGTTAAATGACTTGATAGGTTTATGTGAT
ATGTCGGTCGTCAGACACATGATGGCCAAAATTGAGCCACATTTTCAAAG
GGAttttatatctttattaccAAAAGAGTTGGCACTCTATGTTTTATCTT
TCTTGGAACCAAAAGATTTATCAAATGCTGCAAGGACTTGCAGATATTGG
AGGATCCTTGGAGAAGACAATCTGTAAGCCATCATCTTTTCTCTTTGTTT
GTTCTTTGATAGTGAAACTGAATTTTGTTTATGGCAGTGACAGTGTTAGA
ATATAAATTGTTTTTCTATACTCTAAATTTAAACAAAATGTGTTATTTTT
AGGTCAATTGATGCTATTataaaaaagcctaaattttcaGAAGGTTGAAA
CCAATTATTATTCTTTCTTTAGGTTATGGAAGGAGAAATGCCATGAATAT
CAGTTATTTTATCCTCTAAGTGATCTTTTAGAAGAAGGAAAGGTTGATAA
GAAGGCATCACAACCTAATGAGGCACCTTACAAAGAACTTTTTGCTTATT
GTCACAAATTGGAGCGGAATTGGAGGTCAAACACTTTGAGGCCTGTCATG
TATTTAAGAGGTCATGATGATCATGTTGTAACTTGCTTACAGTTCGACGG
TGTTCGTATAGTCAGTGCCTCAGATGATAATACGTTAAAAGTGTGGTCTG
CTGATACTGGAACTTTGATTCGCACCCTTGTGGGACATACAGGTTTggat
tatttttatacaaaaaagcATGAAATGGTCTTAATGTCTTATTGAAACTT
CAACCAAGTGGGGCTGCCTATTTGATATGCGTAATTCTGTCACTTTTATC
ATCCCACAATATATTTGACTGCTTCATGATATGTTTAGGACATTTTTGAA
TAATGTTCTATAAATATTGAATTACTTCAAATAGGTGGTGTGTGGTCATC
ACAATTAAGTGGAAATATAGTTGTGAGTGGCTCAACAGACAGGACGCTGA
GGGTCTGGAATGCTGATTCAGGAGAATGTATCCATGTTTTACAAGGTCAC
ACATCAACTGTTCGTTGCCTGGCAATGCATGGAGATAACGTAGTAAGCGG
ATCCAGAGATGGAACTCTACGTGTCTGGGATGTCATGAAAGGAACACATC
TTCATGTTTTGATTGGTCATGCAGCTGCTGTCAGATGGTAAAACTGTTCT
TAGACCCCACATCCAGGCTTTTGTGGTTTTGGTTACTTTCTCTGATTTTT
CATAATATTTATAGCTCAACAACAAACAATTATTTAAGCATAgaattgta
aaaatttaaattgtgcTACACCGCAACTTTTTTCAACGTATTTCCACTCC
AGTTGAAGCTCTCTCCTTAAAATCTTGCATCCATTTTTGCTAATGGTGTG
TATATTGATTCCATTATACTAGTTTTAgtaaagaaaacaagttttaaagt
TTATTCCATTATATTGATTTCATATATGATATTTATTTTCAACAGTGTAC
AATACAATGGTAAATACGTTGTCAGCGGTGCTTATGATTATTTGGTAAAA
GTTTGGGATGTTGAAACAGAGACTTGTTTGCATACTCTGACTGGTCATTC
AAATCGTGTCTACTCATTACAGTTTGATGGTAAATACATCGTGTCTGGCT
CTCTGGATACTTCGATACGTGTTTGGGATGCTCTTAGTGGGCAGTTATTA
CACACACTCTTAGGTCATCAATCTTTGACTAGTGGAATGGTGTTGAAGAA
TAATTACTTAGTATCTGGGAATGCAGATTCTACTGTAAAAATCTGGGATA
TTGTGTCTGGACAATGTTTACATACTTTAACTGGTCCCAATAAACATCAA
AGTGCTGTGACTTCTTTACAATTCAATACTAAGTTTGTGGTTACTAGTTC
TGACGATGGATCAGTGAAATTATGGGATCTAAAGACAGGAGAATTCCTTA
GAGACTTGGTTGAATTAGATTCTGGAGGATCTGGCGGTGTGGTTTGGCGT
gtcaaatgcaatgaaaagaaACTTGTATGTGCAGTTGGTAGCAGGAATGG
TACAGAGGAAACTAAACTGTTAGTGTTAGATTTTGATATTCCCTCTATAC
AATTTACGTGATTTCAAACTATGATTAATGGGTTGTCCTTGGCATTATAC
TAAGAAATTTGTATCCACTCACATGTAGCTTAGATCACCAGTCTTCCTAT
GCGAATATAGGGAGATtgtttaaagtttctttttcatCAGTTATTCAATA
AATCCTTATTATAATATTCGTTTATTCagaatttatcaattttttatatG
TTAATTTTATATTAATGTTATAGTAGATGTGCATTTGCTCTTCTTTCATA
CAACAAACAATAATGTGCAATATTTATAATGTCTTTTTAGGGATGTTGTC
AATGTATGCTATGTATACATTACAACATCGTTGCTTTGTTCCTTTGANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
GCACTCTATGTTTTATCTTTCTTGGAACCAAAAGATTTATCAAATGCTGC
AAGGACTTGCAGATATTGGAGGATCCTTGGAGAAGACAATCTGTAAGCTA
TCATCTTTTCTCTTTGTTTGTTCTTTGATAGTGAAACTGAATTTTGTTTA
TGGCAGTGACAGTGTTGGAATATAAATTGTTTTTCTATACTCTAAATTTA
AACAAAATGTGTTATTTTTAGGTCAATTGATGCTATTataaaaaagccta
aatttcTAGAAGGTTGAAACCAATTATTATTCTTTCTTTAGGTTATGGAA
GGAGAAATGCCATGAATATCAGTTATTTTATCCTCTAAGTGATCTTTTAG
AAGAAGGAAAGGTTGATAAGAAGGCATCACAACCTAATGAGGCACCTTAC
AAAGAACTTTTTGCTTATTGTCACAAATTGGAGCGGAATTGGAGGTCAAA
CACTTTGAGGCCTGTCATGTATTTAAGAGGTCATGATGATCATGTTGTAA
CTTGCTTACAGTTCGACGGTGTTCGTATAGTCAGTGCCTCAGATGATAAT
ACGTTAAAAGTGTGGTCTGCTGATACTGGAACTTTGATTCGCACCCTTGT
GGGACATACAGGTTTggattatttttatacaaaaaagcATGAAATGGTCT
TAAAATGTCTTATTGAAACTTCAACCAAGTGGGGTTGCCTATTTGATATG
CGTAATTCTGTCACTTTTATTATCCCACAATATATTTGACTGCTTCATGA
TATGTTTAGGACATTTTTGAATAATGTTCTATAAATATTGAATTACTTCA
AATAGGTGGTGTGTGGTCATCACAATTAAGTGGAAATATAGTTGTGAGTG
GCTCAACAGACAGGACGCTGAGGGTCTGGAATGCTGATTCAGGAGAATGT
ATCCATGTTTTACAAGGTCACACATCAACTGTTCGTTGCCTGGCAATGCA
TGGAGATAACGTAGTAAGCGGATCCAGAGATGGAACTCTACGTGTCTGGG
ATGTCATGAAAGGAACACATCTTCATGTTTTGATTGGTCATGCAGCTGCT
GTCAGATGGTAAAACTGTTCTTAGACCCCACATCCAGGCTTTTGTGGTTT
TGGTTACTTTCTCTGATTTTTCATAATATTTATAGCTCAACAACAAACAA
TTATTTAAGCATAgaattgtaaaaatttaaattgtgcTACACCGCAACTT
TTTTCAACGTATTTCCACTCCAGTTGAAGCTCTCTCCTTAAAATCTTGCA
TCCATTTTTGCTAATGGTGTGTATATTGATTCCATTATACTAGTTTTAgt
aaagaaaacaagttttaaagtTTATTCCATTATATTGATTTCATATATGA
TATTTATTTTCAACAGTGTACAATACAATGGTAAATACGTTGTCAGCGGT
GCTTATGATTATTTGGTAAAAGTTTGGGATGTTGAAACAGAGACTTGTTT
GCATACTCTGACTGGTCATTCAAATCGTGTCTACTCATTACAGTTTGATG
GTAAATACATCGTGTCTGGCTCTCTGGATACTTCGATACGTGTTTGGGAT
GCTCTTAGTGGGCAGTTATTACACACACTCTTAGGTCATCAATCTTTGAC
TAGTGGAATGGTGTTGAAGAATAATTACTTAGTATCTGGGAATGCAGATT
CTACTGTAAAAATCTGGGATATTGTGTCTGGACAATGTTTACATACTTTA
ACTGGTCCCAATAAACATCAAAGTGCTGTGACTTCTTTACAATTCAATAC
TAAGTTTGTGGTTACTAGTTCTGACGATGGATCAGTGAAATTATGGGATC
TAAAGACAGGAGAATTCCTTAGAGACTTGGTTGAATTAGATTCTGGAGGA
TCTGGCGGTGTGGTTTGGCGTgtcaaatgcaatgaaaagaaACTTGTATG
TGCAGTTGGTAGCAGGAATGGTACAGAGGAAACTAAACTGTTAGTGTTAG
ATTTTGATATTCCCTCTATACAATTTACGTGATTTCAAACTATGATTAAT
GGGTTGTCCTTGGCATTATACTAAGAAATTTGTATCCACTCACATGTAGC
TTAGATCACCAGTCTTCCTATGCGAATATAGGGAGATtgtttaaagtttc
tttttcatCAGTTATTCAATAAATCCTTATTATATTCGTTTATTCagaat
ttatcaattttttatatGTTAATTTTATATTAATGTTATAGTAGATGTGC
ATTTGCTCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012618-exon-sc0000146-1491911889:134499..135371 | TCONS_00012618-exon-sc0000146-1491911889:134499..135371 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1510915933:134499..135371 | TCONS_00012618-exon-sc0000146-1510915933:134499..135371 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1575043694:134499..135371 | TCONS_00012618-exon-sc0000146-1575043694:134499..135371 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1491911889:135571..135890 | TCONS_00012618-exon-sc0000146-1491911889:135571..135890 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1510915933:135571..135890 | TCONS_00012618-exon-sc0000146-1510915933:135571..135890 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1575043694:135571..135890 | TCONS_00012618-exon-sc0000146-1575043694:135571..135890 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1491911889:138454..138706 | TCONS_00012618-exon-sc0000146-1491911889:138454..138706 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1510915933:138454..138706 | TCONS_00012618-exon-sc0000146-1510915933:138454..138706 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1575043694:138454..138706 | TCONS_00012618-exon-sc0000146-1575043694:138454..138706 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1491911889:139015..139860 | TCONS_00012618-exon-sc0000146-1491911889:139015..139860 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1510915933:139015..139860 | TCONS_00012618-exon-sc0000146-1510915933:139015..139860 | Clytia hemisphaerica | exon |
| TCONS_00012618-exon-sc0000146-1575043694:139015..139860 | TCONS_00012618-exon-sc0000146-1575043694:139015..139860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:134499..139860 + |
Blast
BLAST of TCONS_00012618 vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1) HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0 Identity = 344/518 (66.41%), Postives = 406/518 (78.38%), Query Frame = 2
Query: 488 TSSSKIVPNVENALCNRTIPSCDSPGKAVRSRLQSETAKPPDGLPDWLNKFHDWSRDERLIALNDLIGLCDMSVVRHMMAKIEPHFQRDFISLLPKELALYVLSFLEPKDLSNAARTCRYWRILGEDNLLWKEKCHEYQLFYPLSDLLEEGKVDKKASQPNEAPYKELFAYCHKLERNWRSNTLRPVMYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGGVWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDNVVSGSRDGTLRVWDVMKGTHLHVLIGHAAAVRCVQYNGKYVVSGAYDYLVKVWDVETETCLHTLTGHSNRVYSLQFDGKYIVSGSLDTSIRVWDALSGQLLHTLLGHQSLTSGMVLKNNYLVSGNADSTVKIWDIVSGQCLHTLTGPNKHQSAVTSLQFNTKFVVTSSDDGSVKLWDLKTGEFLRDLVELDSGGSGGVVWRVKCNEKKLVCAVGSRNGTEETKLLVLDFDI 2041
TS++ +VP + + + G+ R R+ S +PP GL +WL F WS E+L+AL++LI C+ + V+HMM IEP FQRDFISLLPKELALYVLSFLEPKDL AA+TCRYWRIL EDNLLW+EKC E + PL ++ KV K +P+K + H+++ NWR L+ L+GHDDHV+TCLQF G RIVS SDDNTLKVWSA TG +RTLVGHTGGVWSSQ+ NI++SGSTDRTL+VWNA++GECIH L GHTSTVRC+ +H VVSGSRD TLRVWD+ G LHVL+GH AAVRCVQY+G+ VVSGAYD++VKVWD ETETCLHTL GH+NRVYSLQFDG ++VSGSLDTSIRVWD +G +HTL GHQSLTSGM LK+N LVSGNADSTVKIWDI +GQCL TL GPNKHQSAVT LQFN FV+TSSDDG+VKLWDLKTGEF+R+LV L+SGGSGGVVWR++ + KLVCAVGSRNGTEETKLLVLDFD+
Sbjct: 194 TSTTGLVPCSATPTTFGDLRAANGQGQQ-RRRITS--VQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH--IKRRKVIKPGFI--HSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 704
The following BLAST results are available for this feature:
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