|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012595 ID=TCONS_00012595|Name=TCONS_00012595|organism=Clytia hemisphaerica|type=transcript|length=2484bp
gatttattgatttatttctgatttatttttgatttatgatttatttccaa
tttatttttgatttatgatttatttttgatttatctttgatttataaaat
tgtgtacgagatttatttttgtgatttgcccctcgcccttgagaataaac
tctattgactCCCattagtttccaattccaaagatgacCCTCATCCCCAC
AGGACCCCAttttgtcatttcggccgaaatgaggtttgacggttgccaat
ttttagagggagcgcactgcgatggagagcggtgaaatttggcacagaca
cccttgagaataaactctattgactaccaatagtttccaattccaaagat
gaccgctctcccccacaggaccCCAttttgtcatttcggccgaaatgagg
tttgacggttgcCAATTTTTAAAGGGAGCGCACTGGAACGGAGAGCagtg
aaatttggcacagacacccttgagaataaactctattgacttccaatagt
ttccaattccaaaaatGACCCCTCTCCCCCACAGGACCCCAttttgtcat
ttcggccgaaataaGGTTTGACCCGTTGCGGGCCCGTTGCCAATTCTTAG
AGGGAGCGCACCGCGACGGATAGCggtgaaatttggcacataCACCCTTG
ggaataaactctattgactTTCATTAGTTTCCAATCCtaaaattttaggt
ttataCTTTTAAAAGTAATGGTCactgaaattttaaaaaccaaatttgag
aatatcaaacgaatatcaaacgaaaATCAAACGTCCAACGTagtagaata
tcaaaccaacttcaacttaatactttcggcagccatctttttctaaatac
tttcggccaatcaaatcacagtattattggaatcagataatccgttttta
ttaaatcggaatagatcatcggattagataaacaaacaaaaaaagtcTTG
ACCGTcagacgagagagaatttaaggctcgtAGGCCGAAGAAATCAGAAA
GATTTAAACCCAAATTTGAATTATAGCTAAAACATGCccaaaatagagtt
ttttttatcaaaatatgcCCTTTTTGGTCCACTTTTTGGAAGGCCCTCTG
CAGTAAAAATTGGCTGACTTTTGCTTCAATCAGCTTCACAAAAATGCAAT
AACTGTTTTTCTATAATTGCTACAGAGGTCAGTGACCCCTCATTTAAACG
AAAAAAGacagagctttccaaaaaactAAGTTTGATGGGGGGggttgaaa
gtttgaaaattgggctaaagtGCCTATtaaagagcaaaaaatgtcatcAG
TCAATTCAACACTTCCAAATTAAAGCAGCTTTCATAGTCAAAGACACTGC
TGATAGCGTCCAAAAtttgtatgttttaaaaaatatatcacttCTTTGTT
TACCATCTTTGATTATGTTTAGAGCAGCCAAAGAAATTAGTCCCTAGCAA
cgggtatgatttttcgttgCTAGGGAAAATACTTGAGACTGGGGTCTAGA
AAAAACCTTATACCTGAAATGCTACacccttaaaattttcagtgtATGTT
CAGAAAGGGTTTAGGGTCATGAAACGCCCAAAATCCCGAAAGcggcaatt
ttttcaccaaGTCTCAAAAGTTAATTTGATTCCGACCTTAAGTATTTCAT
TATgcacattttttaataatttattcTATTTCTTTTGATTACAGTTGGTG
CGTTGAGCTTCCAACAAGAAGTAATGGCGGAACAACTTCTTTCTGCAACA
TCACTGAAGAATGGGTACCACGTTTCACTAGTGAGGCAGTTTACATCGTC
CCTCCCACAttgagtttatttttcttaatccTGTTCATTGTGTTTAAGAT
AACATGTGGTAGTTTAAAAGGGGGTGATTTTATTAAAGATGCTTTCAGTT
GGAAATGGTATTGCGGGGAAGAACTGAGTGACACAAATAAAACGATCGTA
AGCAAGTATCACAGAGAGCGTGATAACCCAGCCCGGGTAGAATTTGGGTG
TTGTGCAGTGGATACTGGAGTTCATTTCACTGTTCTACTAGTACTCGGAG
GCATCCTTTACGATATCTATGACGTTTATACGGATTGTGAATATCATTAC
AAGTATGAAAATTTCGGACATGTTAACCGAGGGATTTATCGGAATGGAGC
AGTCTCCGTCTCTATTTTGGTGTTTGCTATTTTTGGCATGGCCAAAGTGA
TCCTGGCAtctattttcatcatttttggaAATCTTGATAATAGATTAAAA
CCAGGTACTCACGATCTCTTaacaaattttaaatattttgataccGTTAT
ACTTTTTATTGTAGAAGACTGTGCTGAGAATTTCCTGAATTATTtctata
ttgaaaaatattccctTGGTGAAGCTATTTCGTATGCCATGATTTTTAAG
ATCTTGATTAATTCCTTCAAATATGGTTACAAATTTTTCAAAGGTCTGAA
AAAATCGTATAAGGAGTGGAAACATTTGGAAANN Run BLAST on NCBI protein sequence of TCONS_00012595-protein >TCONS_00012595-protein ID=TCONS_00012595-protein|Name=TCONS_00012595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MAKVILASIFIIFGNLDNRLKPGTHDLLTNFKYFDTVILFIVEDCAENFL
NYFYIEKYSLGEAISYAMIFKILINSFKYGYKFFKGLKKSYKEWKHLEX Run BLAST on NCBI transcript from alignment at sc0000145:521844..524327 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012595 ID=TCONS_00012595|Name=TCONS_00012595|organism=Clytia hemisphaerica|type=transcript|length=2484bp|location=Sequence derived from alignment at sc0000145:521844..524327 (Clytia hemisphaerica)
NNTTTCCAAATGTTTCCACTCCTTATACGATTTTTTCAGACCTTTGAAAA
ATTTGTAACCATATTTGAAGGAATTAATCAAGATCTTAAAAATCATGGCA
TACGAAATAGCTTCACCAagggaatatttttcaatatagaAATAATTCAG
GAAATTCTCAGCACAGTCTTCTACAATAAAAAGTATAACggtatcaaaat
atttaaaatttgttAAGAGATCGTGAGTACCTGGTTTTAATCTATTATCA
AGATTtccaaaaatgatgaaaatagaTGCCAGGATCACTTTGGCCATGCC
AAAAATAGCAAACACCAAAATAGAGACGGAGACTGCTCCATTCCGATAAA
TCCCTCGGTTAACATGTCCGAAATTTTCATACTTGTAATGATATTCACAA
TCCGTATAAACGTCATAGATATCGTAAAGGATGCCTCCGAGTACTAGTAG
AACAGTGAAATGAACTCCAGTATCCACTGCACAACACCCAAATTCTACCC
GGGCTGGGTTATCACGCTCTCTGTGATACTTGCTTACGATCGTTTTATTT
GTGTCACTCAGTTCTTCCCCGCAATACCATTTCCAACTGAAAGCATCTTT
AATAAAATCACCCCCTTTTAAACTACCACATGTTATCTTAAACACAATGA
ACAggattaagaaaaataaactcaaTGTGGGAGGGACGATGTAAACTGCC
TCACTAGTGAAACGTGGTACCCATTCTTCAGTGATGTTGCAGAAAGAAGT
TGTTCCGCCATTACTTCTTGTTGGAAGCTCAACGCACCAACTGTAATCAA
AAGAAATAgaataaattattaaaaaatgtgcATAATGAAATACTTAAGGT
CGGAATCAAATTAACTTTTGAGACttggtgaaaaaattgccgCTTTCGGG
ATTTTGGGCGTTTCATGACCCTAAACCCTTTCTGAACATacactgaaaat
tttaagggtGTAGCATTTCAGGTATAAGGTTTTTTCTAGACCCCAGTCTC
AAGTATTTTCCCTAGcaacgaaaaatcatacccgTTGCTAGGGACTAATT
TCTTTGGCTGCTCTAAACATAATCAAAGATGGTAAACAAAGaagtgatat
attttttaaaacatacaaaTTTTGGACGCTATCAGCAGTGTCTTTGACTA
TGAAAGCTGCTTTAATTTGGAAGTGTTGAATTGACTgatgacattttttg
ctctttaATAGGCactttagcccaattttcaaactttcaaccCCCCCCAT
CAAACTTagttttttggaaagctctgtCTTTTTTCGTTTAAATGAGGGGT
CACTGACCTCTGTAGCAATTATAGAAAAACAGTTATTGCATTTTTGTGAA
GCTGATTGAAGCAAAAGTCAGCCAATTTTTACTGCAGAGGGCCTTCCAAA
AAGTGGACCAAAAAGGgcatattttgataaaaaaaactctattttggGCA
TGTTTTAGCTATAATTCAAATTTGGGTTTAAATCTTTCTGATTTCTTCGG
CCTacgagccttaaattctctctcgtctgACGGTCAAgactttttttgtt
tgtttatctaatccgatgatctattccgatttaataaaaacggattatct
gattccaataatactgtgatttgattggccgaaagtatttagaaaaagat
ggctgccgaaagtattaagttgaagttggtttgatattctactACGTTGG
ACGTTTGATtttcgtttgatattcgtttgatattctcaaatttggttttt
aaaatttcagtGACCATTACTTTTAAAAGtataaacctaaaattttaGGA
TTGGAAACTAATGAAagtcaatagagtttattccCAAGGGTGtatgtgcc
aaatttcaccGCTATCCGTCGCGGTGCGCTCCCTCTAAGAATTGGCAACG
GGCCCGCAACGGGTCAAACCttatttcggccgaaatgacaaaaTGGGGTC
CTGTGGGGGAGAGGGGTCatttttggaattggaaactattggaagtcaat
agagtttattctcaagggtgtctgtgccaaatttcactGCTCTCCGTTCC
AGTGCGCTCCCTTTAAAAATTGgcaaccgtcaaacctcatttcggccgaa
atgacaaaaTGGggtcctgtgggggagagcggtcatctttggaattggaa
actattggtagtcaatagagtttattctcaagggtgtctgtgccaaattt
caccgctctccatcgcagtgcgctccctctaaaaattggcaaccgtcaaa
cctcatttcggccgaaatgacaaaaTGGGGTCCTGTGGGGATGAGGgtca
tctttggaattggaaactaatGGGagtcaatagagtttattctcaagggc
gaggggcaaatcacaaaaataaatctcgtacacaattttataaatcaaag
ataaatcaaaaataaatcataaatcaaaaataaattggaaataaatcata
aatcaaaaataaatcagaaataaatcaataaatc Coding sequence (CDS) from alignment at sc0000145:521844..524327 >TCONS_00012595 ID=TCONS_00012595|Name=TCONS_00012595|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0000145:521844..524327 (Clytia hemisphaerica)
NNTTTCCAAATGTTTCCACTCCTTATACGATTTTTTCAGACCTTTGAAAA
ATTTGTAACCATATTTGAAGGAATTAATCAAGATCTTAAAAATCATGGCA
TACGAAATAGCTTCACCAagggaatatttttcaatatagaAATAATTCAG
GAAATTCTCAGCACAGTCTTCTACAATAAAAAGTATAACggtatcaaaat
atttaaaatttgttAAGAGATCGTGAGTACCTGGTTTTAATCTATTATCA
AGATTtccaaaaatgatgaaaatagaTGCCAGGATCACTTTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012595-exon-sc0000145-1491911889:521844..524327 | TCONS_00012595-exon-sc0000145-1491911889:521844..524327 | Clytia hemisphaerica | exon |
| TCONS_00012595-exon-sc0000145-1510915933:521844..524327 | TCONS_00012595-exon-sc0000145-1510915933:521844..524327 | Clytia hemisphaerica | exon |
| TCONS_00012595-exon-sc0000145-1575043694:521844..524327 | TCONS_00012595-exon-sc0000145-1575043694:521844..524327 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:521844..524327 . |
Blast
The following BLAST results are available for this feature:
|
