TCONS_00012592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012592
Unique NameTCONS_00012592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012592 ID=TCONS_00012592|Name=TCONS_00012592|organism=Clytia hemisphaerica|type=transcript|length=685bp
CGCACACTTCTCTTAGCAATTTGGACGTAATGTCTCTAATTTCATTGTGT
CTCAAAGACACGAATCCTCCATTCTTGCACGAGAGCGCGTGTGCTAGATC
GAACGATGATCCGCACGCGCTAGTTGATGGTAGTCGGTCGAGAGGCCAGT
TGTATCGAATTCTGATGGCATCCCAAAACTCTTGCTTGGTCAGCTCGAAA
CCTTGTTCATTCAAAGGGATGGATGTTAGCCAATTTGAAACACCTTTTTG
ATTGAGCGTCTCCATCGTTCGTTTGGTGTTGATGTCGGCTGCCTCCGAGA
AAGCTCGTAGCTTTTCCTGGTGACATTGCTGCCGTTCGTTGTGAAGACGA
GACTTGGATTTCGCTTCGGGTGCACCGTCATTTGTTTGAAGGATTTGATT
CTGCAGTGCCACGGTTACACTCATCGAGTCTCTGTGATCGTGGCTCGATT
CTTCGGCGTAGATTTTCAGTCCCATTCCGCCGAGACGTGGAGGTAAGAAA
AGCATTATTCTTTCCTGGTCGTTGATGATGCGTCCACCAGTTAGTGATGG
AATCAGTTGGTGCCGCACAGCTTTGTCGACTCTTTTCAGCTCGTCATTGA
TCGTTGGGATGGTGCGTAGGAAGTACGTCAGCTTATGTTGGTAGCTGCTG
ACGTAGGCTGAGTAAGCTGCTTGTGGATAGGTTGC
Run BLAST on NCBI

protein sequence of TCONS_00012592-protein

>TCONS_00012592-protein ID=TCONS_00012592-protein|Name=TCONS_00012592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
ATYPQAAYSAYVSSYQHKLTYFLRTIPTINDELKRVDKAVRHQLIPSLTG
GRIINDQERIMLFLPPRLGGMGLKIYAEESSHDHRDSMSVTVALQNQILQ
TNDGAPEAKSKSRLHNERQQCHQEKLRAFSEAADINTKRTMETLNQKGVS
NWLTSIPLNEQGFELTKQEFWDAIRIRYNWPLDRLPSTSACGSSFDLAHA
LSCKNGGFVSLRHNEIRDITSKLLREVC
Run BLAST on NCBI

transcript from alignment at sc0000145:485075..485759

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012592 ID=TCONS_00012592|Name=TCONS_00012592|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at sc0000145:485075..485759 (Clytia hemisphaerica)
GCAACCTATCCACAAGCAGCTTACTCAGCCTACGTCAGCAGCTACCAACA
TAAGCTGACGTACTTCCTACGCACCATCCCAACGATCAATGACGAGCTGA
AAAGAGTCGACAAAGCTGTGCGGCACCAACTGATTCCATCACTAACTGGT
GGACGCATCATCAACGACCAGGAAAGAATAATGCTTTTCTTACCTCCACG
TCTCGGCGGAATGGGACTGAAAATCTACGCCGAAGAATCGAGCCACGATC
ACAGAGACTCGATGAGTGTAACCGTGGCACTGCAGAATCAAATCCTTCAA
ACAAATGACGGTGCACCCGAAGCGAAATCCAAGTCTCGTCTTCACAACGA
ACGGCAGCAATGTCACCAGGAAAAGCTACGAGCTTTCTCGGAGGCAGCCG
ACATCAACACCAAACGAACGATGGAGACGCTCAATCAAAAAGGTGTTTCA
AATTGGCTAACATCCATCCCTTTGAATGAACAAGGTTTCGAGCTGACCAA
GCAAGAGTTTTGGGATGCCATCAGAATTCGATACAACTGGCCTCTCGACC
GACTACCATCAACTAGCGCGTGCGGATCATCGTTCGATCTAGCACACGCG
CTCTCGTGCAAGAATGGAGGATTCGTGTCTTTGAGACACAATGAAATTAG
AGACATTACGTCCAAATTGCTAAGAGAAGTGTGCG

Coding sequence (CDS) from alignment at sc0000145:485075..485759

>TCONS_00012592 ID=TCONS_00012592|Name=TCONS_00012592|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000145:485075..485759 (Clytia hemisphaerica)
GCAACCTATCCACAAGCAGCTTACTCAGCCTACGTCAGCAGCTACCAACA
TAAGCTGACGTACTTCCTACGCACCATCCCAACGATCAATGACGAGCTGA
AAAGAGTCGACAAAGCTGTGCGGCACCAACTGATTCCATCACTAACTGGT
GGACGCATCATCAACGACCAGGAAAGAATAATGCTTTTCTTACCTCCACG
TCTCGGCGGAATGGGACTGAAAATCTACGCCGAAGAATCGAGCCACGATC
ACAGAGACTCGATGAGTGTAACCGTGGCACTGCAGAATCAAATCCTTCAA
ACAAATGACGGTGCACCCGAAGCGAAATCCAAGTCTCGTCTTCACAACGA
ACGGCAGCAATGTCACCAGGAAAAGCTACGAGCTTTCTCGGAGGCAGCCG
ACATCAACACCAAACGAACGATGGAGACGCTCAATCAAAAAGGTGTTTCA
AATTGGCTAACATCCATCCCTTTGAATGAACAAGGTTTCGAGCTGACCAA
GCAAGAGTTTTGGGATGCCATCAGAATTCGATACAACTGGCCTCTCGACC
GACTACCATCAACTAGCGCGTGCGGATCATCGTTCGATCTAGCACACGCG
CTCTCGTGCAAGAATGGAGGATTCGTGTCTTTGAGACACAATGAAATTAG
AGACATTACGTCCAAATTGCTAAGAGAAGTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007068XLOC_007068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012592-exon-sc0000145-1491911889:485075..485759TCONS_00012592-exon-sc0000145-1491911889:485075..485759Clytia hemisphaericaexon
TCONS_00012592-exon-sc0000145-1510915933:485075..485759TCONS_00012592-exon-sc0000145-1510915933:485075..485759Clytia hemisphaericaexon
TCONS_00012592-exon-sc0000145-1575043694:485075..485759TCONS_00012592-exon-sc0000145-1575043694:485075..485759Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012592-proteinTCONS_00012592-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:485075..485759 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460271	0.544372	1.62177	1.18313	0.12212	0.514285	0.710087	1.52885	0.733766	1.00857	0.58562	1.35161	0.581299	0.801092	0.802063	0.785004	0.850378	0.90232	0.789102	0.787491	0.565506	1.27198	0.296515	0.354926	1.09639	0.382507	1.46403	0.67585	0.222598	0.297421
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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