TCONS_00012589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012589
Unique NameTCONS_00012589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012589 ID=TCONS_00012589|Name=TCONS_00012589|organism=Clytia hemisphaerica|type=transcript|length=492bp
GCGTAGGTGAATTCGTTATTTGAGCTTGTTTTACTTCATCTGTTTCATTT
TTGTGAGTAAAATTTATGTTTTCGTCTTGACATGCCGGGCATAGATAACA
AAATCCAGGGATTTTAAAGATGAGATTACATAATTTCtcatgttcattca
aaagattcATGCTCATCAGAAGTTTAAGATAGCATGGTCGGTGCACTTCC
TGACCACACGCACAACAGCTAATGAGTGGTTTGTCATTGAGTTTGCATGA
ATATGATTCTTGACAAATCTGGCATACatctgggaaaaattttttgatct
tCAAACATAATAGGTGGATTGCATCGTCCTTGTTAAGGTTGTTAGATGGC
AATGATGATGAAGAGGTTGTGAGATAGTCAAGGGTTTCAATTATTGGAGA
TTTGCGACATGATTTAAGTGCTTTGATGTTGTCTTTGGTTGGAAGTTCAG
GGTTGTACATCCGTAAGCAATTTTTGATAACGTCAGTAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00012589-protein

>TCONS_00012589-protein ID=TCONS_00012589-protein|Name=TCONS_00012589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
PTDVIKNCLRMYNPELPTKDNIKALKSCRKSPIIETLDYLTTSSSSLPSN
NLNKDDAIHLLCLKIKKFFPDVCQICQESYSCKLNDKPLISCCACGQEVH
RPCYLKLLMSMNLLNEHEKLCNLIFKIPGFCYLCPACQDENINFTHKNET
DEVKQAQITNSPT
Run BLAST on NCBI

transcript from alignment at sc0000145:372483..372974

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012589 ID=TCONS_00012589|Name=TCONS_00012589|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0000145:372483..372974 (Clytia hemisphaerica)
CTCCTACTGACGTTATCAAAAATTGCTTACGGATGTACAACCCTGAACTT
CCAACCAAAGACAACATCAAAGCACTTAAATCATGTCGCAAATCTCCAAT
AATTGAAACCCTTGACTATCTCACAACCTCTTCATCATCATTGCCATCTA
ACAACCTTAACAAGGACGATGCAATCCACCTATTATGTTTGaagatcaaa
aaatttttcccagatGTATGCCAGATTTGTCAAGAATCATATTCATGCAA
ACTCAATGACAAACCACTCATTAGCTGTTGTGCGTGTGGTCAGGAAGTGC
ACCGACCATGCTATCTTAAACTTCTGATGAGCATgaatcttttgaatgaa
catgaGAAATTATGTAATCTCATCTTTAAAATCCCTGGATTTTGTTATCT
ATGCCCGGCATGTCAAGACGAAAACATAAATTTTACTCACAAAAATGAAA
CAGATGAAGTAAAACAAGCTCAAATAACGAATTCACCTACGC

Coding sequence (CDS) from alignment at sc0000145:372483..372974

>TCONS_00012589 ID=TCONS_00012589|Name=TCONS_00012589|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0000145:372483..372974 (Clytia hemisphaerica)
CCTACTGACGTTATCAAAAATTGCTTACGGATGTACAACCCTGAACTTCC
AACCAAAGACAACATCAAAGCACTTAAATCATGTCGCAAATCTCCAATAA
TTGAAACCCTTGACTATCTCACAACCTCTTCATCATCATTGCCATCTAAC
AACCTTAACAAGGACGATGCAATCCACCTATTATGTTTGaagatcaaaaa
atttttcccagatGTATGCCAGATTTGTCAAGAATCATATTCATGCAAAC
TCAATGACAAACCACTCATTAGCTGTTGTGCGTGTGGTCAGGAAGTGCAC
CGACCATGCTATCTTAAACTTCTGATGAGCATgaatcttttgaatgaaca
tgaGAAATTATGTAATCTCATCTTTAAAATCCCTGGATTTTGTTATCTAT
GCCCGGCATGTCAAGACGAAAACATAAATTTTACTCACAAAAATGAAACA
GATGAAGTAAAACAAGCTCAAATAACGAATTCACCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007065XLOC_007065Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012589-proteinTCONS_00012589-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012589-exon-sc0000145-1491911889:372483..372974TCONS_00012589-exon-sc0000145-1491911889:372483..372974Clytia hemisphaericaexon
TCONS_00012589-exon-sc0000145-1510915933:372483..372974TCONS_00012589-exon-sc0000145-1510915933:372483..372974Clytia hemisphaericaexon
TCONS_00012589-exon-sc0000145-1575043694:372483..372974TCONS_00012589-exon-sc0000145-1575043694:372483..372974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:372483..372974 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.99603	2.45477	3.70428	3.45999	5.35537	2.71363	6.77673	6.77258	4.26238	3.25128	7.13033	3.10468	2.86345	2.2988	1.90787	2.2544	1.81689	1.78417	2.16409	1.56476	2.54017	3.48588	0.315892	1.54398	3.25206	4.37659	1.26457	0.95853	1.08823	1.78715
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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