|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012580 ID=TCONS_00012580|Name=TCONS_00012580|organism=Clytia hemisphaerica|type=transcript|length=2873bp
TGATTGCCCAATGTGTTCTATGCAATAAACTGAACCACCATTGAGCATAC
CACATAAATTATGCATAAACAGAAGAGTGAAGAGTGCTGCATAATTATGA
AATACGAAATAGCATGTACTTCGTTTGATTCATAAGAAGATCAATGGATA
TCGACAAGAGCGATTTGGAGTGAGAAAGAAGGGGGGagaggagagaaaaa
aaaagctgagaaaagctaaaaaagaattttgattgTTATACTATGTATTG
CGAAAGCAAAACACGGTGAGGGAAAAAAGAGCTTCTCGTTTAGATTCAGT
TCAGAGGAAACGCGTTATTGCACAAGAACTTCTCTTATCAGAGCTTTTTA
TAAACATACAGCAACAAAAGGCGATTTTGAAGAGAGAGTGGAAACCAGGT
CATAAAAGTATTGCAGTTACCGATTGTGCAATACCAAATCTTTctaatta
aaaactttttttaaagacatttcttttgtttgatttgattgttgaacAAA
GGGGTGAAATAAagagaaatagagaaaaaaatcgTCGCGGCTGGCTGATA
TCTAGAAAAGAGAGAGAAAATTCAATGAACAAAATTAGTATTGACTTTCA
TCTCGATAAAAGAAAGCGGGTTTTTTTTGAGAGCGGTGTGTGAAGGAttt
tttgttgagaaatttcgcaccaccaaaaaaaatctcataacaTTCATAAC
GAGCACATGGAATTAGTATGAACTTGATATAGACAAGATACAAATGTGAA
GAtctgattttattttggttgaaCCATATTCAAAGACAGTATTTTTTATG
AAGAACTCTGATGCTACCACGACACAGACCTATAAACGTATGTTGAAGAA
AGGTTGCTTGAGAGCCTTGTTTCAGAAAAGAACCAAAACACAAAACTCGA
CGAATTCGACCGGTTTATCACGGGGTAAAATGCGTGAACGTGATTTAACC
TCACGTTTATCACAGATCAAATGTAACCACGACCAAACACTGATGCGTTC
ATATAGCCTGGATTTCACACCGACTAAACGGACAGAGGCTGGTGAAAAAG
TCTATATAATGTACGttgcttttattttgaaaggcaAATATATATTAGCA
GtacaaagaaaaactaaaaaattcaaTACGTCGACTTTTCAAGCTATTCT
TTGGGAAGCTAACGAAGTTAAAGAAGAAGTTGAAAGTTTATCAAACTCAA
GACAAGAATTATTGACAGTCTCTATGAATGATGATATTGTATGGTCAAAC
CAAACATTTGATTTAAACTTTACGGAGATTCATCAGGTACATGTTTCTGA
TGGACATAAACTGACCATAGTTGGTTGTACAGGAAAGAACAGTCAGATAA
TACAACAATTTAATTTCATTACGAAAACGAACTCAGATAAAGGACCGATT
AGGATGAAGAGTGAATTCGTTTTATCCTTAACGTCAAAAAAGATGgcaat
caaaaagaaaacatcAATACCTGTCTTGGGAACGTTAGATATCCCGGAAG
ACTGTCACGCTAACGTCGTCGCGTTAACGTGTGAGAGCGGTGTTACGTCA
TTCGTGTATCAAATCACGTCGTTCACGCAAACACGGTGGATCGTATGCTT
GTATAACGGGAACGCTAGAAAGACAACGCAACAGTTTCATTATTACGAGC
TTACGTCAAATATTGTACGGGGTGCTATTTCGTCGGCATGCTTACTGAAC
AATAAATCAAAACTCGTTTTGGTGACCACAGCTTTCCAACTTTTAACTCT
AGACATTGAAAAGAATGGGTTGTCGTTGAGAAGTATACGTTTATTGAGTG
ATCAGAACTTGATGTTTGAATCTGATTACCAGAatatatttcttcaaaaa
ttgaaCTATAAATGCttggaaacagatgaaaataagGAGTTAGTAATTGC
ATGTTCCACTGCTGGCCGTTTATTTTTCATACCGGAATGTATAAACTCTT
TTAACACCGAGATCCATTCTTTTGACGTAGCATCTGTACTGGATATAGGT
GACGATCAACAATTCTACGTGCAGCAATTCACGTCTTGTGATTTCACTAA
ACAGTGCGTGCTGACGTGTCGGTCAGGCCGCGTATACACGTTCGACATAC
TTAAGAAAACTGTTgttcaaaaaacgaaaatctgCACTGAGACAGGAGAC
TCATCAACTCCAGATGACTTCACTAGTGCTTTGGATACAGATTTTTATTA
CCAATTGATAGACTTGAATTCGTTTGGTGATGAACTATATCATCTACAAG
ATAACAGGCTACATGTACATTTAATGAAATCCTCACAAACTTCACTGGAA
CAAATCTACAGGGTAAAGATTCTGGACAATTTACCCATTGAGGAAATTAT
GAAATCTAACGTATCAACCTTGGTAAAAAGGATTGTTAGTTAGCCTGGTG
AGTGATGTGggatgttgattttttttgagatGTTTATATTTTAGATTGTG
TTCCTGTTtgcttgtttatatttttataatatatATAAGAAATATACTTC
CTTGATTTTTGCGAAGGACTGAAAGTTTTGTAATGAGTTTATATGGATAG
ATAAATTGATCAAGGAGAATTTCATAAGACATTTCTGCATTGGATCTTGT
TGACGGTTTCTTTCCGTTCTAAAACATGTTTTATAATGTTCGTataacaa
tagaattttaaaCCAGTGTACAAATGTGTTGTAATTCTTCAGTTTTTTCa
tatattattatttattttatatttcttttgaaaagctGACGTTTAgagta
taaaataaaaaaagaacaaattcttaaaactttgagtatttggatgggtc
acaggcaagaaacaacaaaaatttatttatttattgataaattttctccC
TACTCTATGGTAGAGCATCTTCA Run BLAST on NCBI protein sequence of TCONS_00012580-protein >TCONS_00012580-protein ID=TCONS_00012580-protein|Name=TCONS_00012580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MKNSDATTTQTYKRMLKKGCLRALFQKRTKTQNSTNSTGLSRGKMRERDL
TSRLSQIKCNHDQTLMRSYSLDFTPTKRTEAGEKVYIMYVAFILKGKYIL
AVQRKTKKFNTSTFQAILWEANEVKEEVESLSNSRQELLTVSMNDDIVWS
NQTFDLNFTEIHQVHVSDGHKLTIVGCTGKNSQIIQQFNFITKTNSDKGP
IRMKSEFVLSLTSKKMAIKKKTSIPVLGTLDIPEDCHANVVALTCESGVT
SFVYQITSFTQTRWIVCLYNGNARKTTQQFHYYELTSNIVRGAISSACLL
NNKSKLVLVTTAFQLLTLDIEKNGLSLRSIRLLSDQNLMFESDYQNIFLQ
KLNYKCLETDENKELVIACSTAGRLFFIPECINSFNTEIHSFDVASVLDI
GDDQQFYVQQFTSCDFTKQCVLTCRSGRVYTFDILKKTVVQKTKICTETG
DSSTPDDFTSALDTDFYYQLIDLNSFGDELYHLQDNRLHVHLMKSSQTSL
EQIYRVKILDNLPIEEIMKSNVSTLVKRIVS Run BLAST on NCBI transcript from alignment at sc0000145:139433..142305 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012580 ID=TCONS_00012580|Name=TCONS_00012580|organism=Clytia hemisphaerica|type=transcript|length=2873bp|location=Sequence derived from alignment at sc0000145:139433..142305 (Clytia hemisphaerica)
TGAAGATGCTCTACCATAGAGTAGggagaaaatttatcaataaataaata
aatttttgttgtttcttgcctgtgacccatccaaatactcaaagttttaa
gaatttgttctttttttattttatactcTAAACGTCagcttttcaaaaga
aatataaaataaataataatatatGAAAAAACTGAAGAATTACAACACAT
TTGTACACTGGtttaaaattctattgttatACGAACATTATAAAACATGT
TTTAGAACGGAAAGAAACCGTCAACAAGATCCAATGCAGAAATGTCTTAT
GAAATTCTCCTTGATCAATTTATCTATCCATATAAACTCATTACAAAACT
TTCAGTCCTTCGCAAAAATCAAGGAAGTATATTTCTTATatatattataa
aaatataaacaagcaAACAGGAACACAATCTAAAATATAAACatctcaaa
aaaaatcaacatccCACATCACTCACCAGGCTAACTAACAATCCTTTTTA
CCAAGGTTGATACGTTAGATTTCATAATTTCCTCAATGGGTAAATTGTCC
AGAATCTTTACCCTGTAGATTTGTTCCAGTGAAGTTTGTGAGGATTTCAT
TAAATGTACATGTAGCCTGTTATCTTGTAGATGATATAGTTCATCACCAA
ACGAATTCAAGTCTATCAATTGGTAATAAAAATCTGTATCCAAAGCACTA
GTGAAGTCATCTGGAGTTGATGAGTCTCCTGTCTCAGTGcagattttcgt
tttttgaacAACAGTTTTCTTAAGTATGTCGAACGTGTATACGCGGCCTG
ACCGACACGTCAGCACGCACTGTTTAGTGAAATCACAAGACGTGAATTGC
TGCACGTAGAATTGTTGATCGTCACCTATATCCAGTACAGATGCTACGTC
AAAAGAATGGATCTCGGTGTTAAAAGAGTTTATACATTCCGGTATGAAAA
ATAAACGGCCAGCAGTGGAACATGCAATTACTAACTCcttattttcatct
gtttccaaGCATTTATAGttcaatttttgaagaaatatatTCTGGTAATC
AGATTCAAACATCAAGTTCTGATCACTCAATAAACGTATACTTCTCAACG
ACAACCCATTCTTTTCAATGTCTAGAGTTAAAAGTTGGAAAGCTGTGGTC
ACCAAAACGAGTTTTGATTTATTGTTCAGTAAGCATGCCGACGAAATAGC
ACCCCGTACAATATTTGACGTAAGCTCGTAATAATGAAACTGTTGCGTTG
TCTTTCTAGCGTTCCCGTTATACAAGCATACGATCCACCGTGTTTGCGTG
AACGACGTGATTTGATACACGAATGACGTAACACCGCTCTCACACGTTAA
CGCGACGACGTTAGCGTGACAGTCTTCCGGGATATCTAACGTTCCCAAGA
CAGGTATTgatgttttctttttgattgcCATCTTTTTTGACGTTAAGGAT
AAAACGAATTCACTCTTCATCCTAATCGGTCCTTTATCTGAGTTCGTTTT
CGTAATGAAATTAAATTGTTGTATTATCTGACTGTTCTTTCCTGTACAAC
CAACTATGGTCAGTTTATGTCCATCAGAAACATGTACCTGATGAATCTCC
GTAAAGTTTAAATCAAATGTTTGGTTTGACCATACAATATCATCATTCAT
AGAGACTGTCAATAATTCTTGTCTTGAGTTTGATAAACTTTCAACTTCTT
CTTTAACTTCGTTAGCTTCCCAAAGAATAGCTTGAAAAGTCGACGTAttg
aattttttagtttttctttgtaCTGCTAATATATATTtgcctttcaaaat
aaaagcaaCGTACATTATATAGACTTTTTCACCAGCCTCTGTCCGTTTAG
TCGGTGTGAAATCCAGGCTATATGAACGCATCAGTGTTTGGTCGTGGTTA
CATTTGATCTGTGATAAACGTGAGGTTAAATCACGTTCACGCATTTTACC
CCGTGATAAACCGGTCGAATTCGTCGAGTTTTGTGTTTTGGTTCTTTTCT
GAAACAAGGCTCTCAAGCAACCTTTCTTCAACATACGTTTATAGGTCTGT
GTCGTGGTAGCATCAGAGTTCTTCATAAAAAATACTGTCTTTGAATATGG
ttcaaccaaaataaaatcagaTCTTCACATTTGTATCTTGTCTATATCAA
GTTCATACTAATTCCATGTGCTCGTTATGAAtgttatgagattttttttg
gtggtgcgaaatttctcaacaaaaaaTCCTTCACACACCGCTCTCAAAAA
AAACCCGCTTTCTTTTATCGAGATGAAAGTCAATACTAATTTTGTTCATT
GAATTTTCTCTCTCTTTTCTAGATATCAGCCAGCCGCGAcgatttttttc
tctatttctctTTATTTCACCCCTTTgttcaacaatcaaatcaaacaaaa
gaaatgtctttaaaaaaagtttttaattagAAAGATTTGGTATTGCACAA
TCGGTAACTGCAATACTTTTATGACCTGGTTTCCACTCTCTCTTCAAAAT
CGCCTTTTGTTGCTGTATGTTTATAAAAAGCTCTGATAAGAGAAGTTCTT
GTGCAATAACGCGTTTCCTCTGAACTGAATCTAAACGAGAAGCTCTTTTT
TCCCTCACCGTGTTTTGCTTTCGCAATACATAGTATAAcaatcaaaattc
ttttttagcttttctcagctttttttttctctcctctCCCCCCTTCTTTC
TCACTCCAAATCGCTCTTGTCGATATCCATTGATCTTCTTATGAATCAAA
CGAAGTACATGCTATTTCGTATTTCATAATTATGCAGCACTCTTCACTCT
TCTGTTTATGCATAATTTATGTGGTATGCTCAATGGTGGTTCAGTTTATT
GCATAGAACACATTGGGCAATCA Coding sequence (CDS) from alignment at sc0000145:139433..142305 >TCONS_00012580 ID=TCONS_00012580|Name=TCONS_00012580|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at sc0000145:139433..142305 (Clytia hemisphaerica)
CTAACTAACAATCCTTTTTACCAAGGTTGATACGTTAGATTTCATAATTT
CCTCAATGGGTAAATTGTCCAGAATCTTTACCCTGTAGATTTGTTCCAGT
GAAGTTTGTGAGGATTTCATTAAATGTACATGTAGCCTGTTATCTTGTAG
ATGATATAGTTCATCACCAAACGAATTCAAGTCTATCAATTGGTAATAAA
AATCTGTATCCAAAGCACTAGTGAAGTCATCTGGAGTTGATGAGTCTCCT
GTCTCAGTGcagattttcgttttttgaacAACAGTTTTCTTAAGTATGTC
GAACGTGTATACGCGGCCTGACCGACACGTCAGCACGCACTGTTTAGTGA
AATCACAAGACGTGAATTGCTGCACGTAGAATTGTTGATCGTCACCTATA
TCCAGTACAGATGCTACGTCAAAAGAATGGATCTCGGTGTTAAAAGAGTT
TATACATTCCGGTATGAAAAATAAACGGCCAGCAGTGGAACATGCAATTA
CTAACTCcttattttcatctgtttccaaGCATTTATAGttcaatttttga
agaaatatatTCTGGTAATCAGATTCAAACATCAAGTTCTGATCACTCAA
TAAACGTATACTTCTCAACGACAACCCATTCTTTTCAATGTCTAGAGTTA
AAAGTTGGAAAGCTGTGGTCACCAAAACGAGTTTTGATTTATTGTTCAGT
AAGCATGCCGACGAAATAGCACCCCGTACAATATTTGACGTAAGCTCGTA
ATAATGAAACTGTTGCGTTGTCTTTCTAGCGTTCCCGTTATACAAGCATA
CGATCCACCGTGTTTGCGTGAACGACGTGATTTGATACACGAATGACGTA
ACACCGCTCTCACACGTTAACGCGACGACGTTAGCGTGACAGTCTTCCGG
GATATCTAACGTTCCCAAGACAGGTATTgatgttttctttttgattgcCA
TCTTTTTTGACGTTAAGGATAAAACGAATTCACTCTTCATCCTAATCGGT
CCTTTATCTGAGTTCGTTTTCGTAATGAAATTAAATTGTTGTATTATCTG
ACTGTTCTTTCCTGTACAACCAACTATGGTCAGTTTATGTCCATCAGAAA
CATGTACCTGATGAATCTCCGTAAAGTTTAAATCAAATGTTTGGTTTGAC
CATACAATATCATCATTCATAGAGACTGTCAATAATTCTTGTCTTGAGTT
TGATAAACTTTCAACTTCTTCTTTAACTTCGTTAGCTTCCCAAAGAATAG
CTTGAAAAGTCGACGTAttgaattttttagtttttctttgtaCTGCTAAT
ATATATTtgcctttcaaaataaaagcaaCGTACATTATATAGACTTTTTC
ACCAGCCTCTGTCCGTTTAGTCGGTGTGAAATCCAGGCTATATGAACGCA
TCAGTGTTTGGTCGTGGTTACATTTGATCTGTGATAAACGTGAGGTTAAA
TCACGTTCACGCATTTTACCCCGTGATAAACCGGTCGAATTCGTCGAGTT
TTGTGTTTTGGTTCTTTTCTGAAACAAGGCTCTCAAGCAACCTTTCTTCA
ACATACGTTTATAGGTCTGTGTCGTGGTAGCATCAGAGTTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012580-exon-sc0000145-1491911889:139433..142305 | TCONS_00012580-exon-sc0000145-1491911889:139433..142305 | Clytia hemisphaerica | exon |
| TCONS_00012580-exon-sc0000145-1510915933:139433..142305 | TCONS_00012580-exon-sc0000145-1510915933:139433..142305 | Clytia hemisphaerica | exon |
| TCONS_00012580-exon-sc0000145-1575043694:139433..142305 | TCONS_00012580-exon-sc0000145-1575043694:139433..142305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:139433..142305 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
