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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012574 ID=TCONS_00012574|Name=TCONS_00012574|organism=Clytia hemisphaerica|type=transcript|length=3232bp
ACTGCTATGCATGTTTTGGTTTTGCTGCGTACTAATTTTGTTGTTGTGTC
TAGCGGGACTAGTATTATAATTTTGTCTTGCTTGATTATTTAATAATTAC
TTTGTAATATCGAACAACTGCAGTTTTAAGTTGACATATACAAACATACG
CTCTATGTGTAGTTTCTTACTTATGATCACATggcattcaaagaaaattc
acaTACATCATAACCTCAATCACCACCGACAGACAATTTCATTCCTTCAA
CCAAAACACCACCCAGTGGAAGTTTGCAAATTCCAACTACCACAACCCTC
TACAAGGATACATattcattaaaatcattatgaCCTCATTCACCTCAATG
CCCATCAACTGAAATAAGCAGAAGTCGAACACCTCCTCCTCCTTCAGTAA
TACGCAGTCGACCACCACCTCCTCCTCCTTCAGCGATGCAGAGTGAACCA
CCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGT
AAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGAC
TACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCT
CCTTCAGCGATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGA
TGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTC
TGCCTTCAGTAATACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATA
CGCAGTCGACCACCACCTCCTCCTTCATCAGCGATGCAGAGTGAACCACC
ACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAA
AACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTA
CCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCC
TTCAGCAATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATG
GCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCG
CCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACG
CAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATC
TTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTA
ATACGCAGTGGACCACCACCTCCTCCTCCTTCTTCTTCAGCAATACGCAG
TCGACCACCACATCCTCCTCCTTCAGCGATGCAGAGTGAACCACCACTTC
CTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAAACGT
AGTGAACCACCTCATCCTCCGCCTTCAGTAATACACTATGGACCACCACC
TCCTCCTCCTTCAGTAATACGCAGTGGACCATCTTCTTCTCGTTCAGCAA
TACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACGCAGTGGACCA
CCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCACCACCTCCTCC
TCCTTCAGCGATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATAC
GCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCA
CCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCACC
TTCAGCAATACGCAATGGACCACCACCTCCTCCTTCATTAATACGCAGTG
GACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACCACCTCTTCCA
CCTTCAGCGATACGCAGTGGAccacctcctcctcctccttcAGTAATACG
CAGTGGAGCATCTACTCCACCTTCAGCAACACGCAGTGAACCACCTCCTT
CTCGTTCAGTAACACGCAGTGGACCACCACCTCATCCTTCAGCAAAACGC
AGTGAACCACCTCCTTCTCGTTCAGTAACACACAGTGGACCACCACCTCC
ACCTTCAGCAACACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACGCA
GTCGACCACCACCTCCTCCTTCAGTAATACGCAGTGGACCACCTCCTCCA
CCTTCAGCAATACATAGCGGAACACCTCCAGCTACATCGACTAATAAATT
TTTTGAGCCACCTCCTGGTGTCTCATGGTTATCTAAAAGAAGCAATATGT
TTCAACCGACCAAAAGAGAACCCCCTGCACCTGACAATCTAAAAAGTAGC
AGTGGTGATTGGCGAGTAAAACTCAAATCATGGACCGTTGAAGATGTTTG
CGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAATTGTTCCGCT
TTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAAGAATCACTA
GTAGACGCTCTTAAAATAGAACGTATCGGTCACCGAAGGAAGATTATGAG
GAATTTAACTAAAttattagaaaaagaaaaagaagagaagAGAACTAAAG
AAAAAGAGGAGGAAACGCCGGACGAATTTCTTTGTCCGATAACTCNAGAG
AAGaaggaaacaaaagaaaaagaggaGGAAACACCGGACGAATTTCTCTG
TCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGACGGTT
ACACATACGAACGAACATCAATCACTCAATGGTTTGAAACTGGAAACAAT
AGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAA
TAGATCCCTTAAAGACGCTATTAACAGACATCTTGGACAGTAATTCTATG
GACACGAACACAAAAATTAAGTACAATTGTACCGGCCCTATCGTACACAA
CTTGTACACAATGTATTAATGAGTCTTTTGGCAATCGATCAAGATTCCGT
GGgacttttgatattttgatcaAACTGATTTGATAAAACAAAACGTAATG
AACTACCATTTAGCTATATCAACTTAAAAATTTATTAGATATAACACAGT
TTAATTTCgataatttgaataaaaaaactcGCAAATAAATACACTTCCAT
GAAACGAAAATAAAATCCAACAATTGTtaatttttcttaaagaaaatagt
ttttatGAACCAAAACAAAAGGCCATCATTGGTAAATTTCTTCATCTACG
TATTTTTCATATCAACAGTTTCAACTCCAAGCCGAGTCCAAAATATAGTA
TTGCGTTCGTAATATTTTAAGGTCTTGATATA Run BLAST on NCBI transcript from alignment at sc0000145:479028..484179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012574 ID=TCONS_00012574|Name=TCONS_00012574|organism=Clytia hemisphaerica|type=transcript|length=5152bp|location=Sequence derived from alignment at sc0000145:479028..484179- (Clytia hemisphaerica)
ACTGCTATGCATGTTTTGGTTTTGCTGCGTACTAATTTTGTTGTTGTGTC
TAGCGGGACTAGTATTATAATTTTGTCTTGCTTGATTATTTAATAATTAC
TTTGTAATATCGAACAACTGCAGTTTTAAGTTGACATATACAAACATACG
CTCTATGTGTAGTTTCTTACTTATGATCACATGGCATTCAAAGAAAATTC
ACATACATCATAACCTCAATCACCACCGACAGACAATTTCATTCCTTCAA
CCAAAACACCACCCAGTGGAAGTTTGCAAATTCCAACTACCACAACCCTC
TACAAGGATACATATTCATTAAAATCATTATGACCTCATTCACCTCAATG
CCCATCAACTGAAATAAGCAGAAGTCGAACACCTCCTCCTCCTTCAGTAA
TACGCAGTCGACCACCACCTCCTCCTCCTTCAGCGATGCAGAGTGAACCA
CCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGT
AAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGAC
TACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCT
CCTTCAGCGATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGA
TGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTC
TGCCTTCAGTAATACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATA
CGCAGTCGACCACCACCTCCTCCTTCATCAGCGATGCAGAGTGAACCACC
ACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAA
AACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTA
CCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCC
TTCAGCAATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATG
GCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCG
CCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACG
CAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATC
TTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTA
ATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACGCAGTGGACC
ACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCACCTCCTCCTC
CTTCAGTAATACACTTTGGACTACCACCTCCTCCTTCATTAATACGCAGT
GGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACCACCTCTTCC
ACCTTCAGCGATACGCAATGGACCACCACCTCCTCCTCCTTCTTCTTCAG
CAATACGCAGTCGACCACCACATCCTCCTCCTTCAGCGATGCAGAGTGAA
CCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTC
AGTAAAACGTAGTGAACCACCTCATCCTCCGCCTTCAGTAATACACTATG
GACCACCACCTCCTCCTCCTTCAGTAATACGCAGTGGACCATCTTCTTCT
CGTTCAGCAATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACG
CAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCAC
CACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCACATCTTTCTCCT
TCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAA
TGGACCACCACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCAC
CTCCTCCACCTTCAGCAATACGCAATGGACCACCACCTCCTCCTTCATTA
ATACGCAGTGGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACC
ACCTCTTCCACCTTCAGCGATACGCAGTGGACCACCTCCTCCTCCTCCTT
CAGTAATACGCAGTGGAGCATCTACTCCACCTTCAGCAACACGCAGTGAA
CCACCTCCTTCTCGTTCAGTAACACGCAGTGGACCACCACCTCATCCTTC
AGCAAAACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACACAGTGGAC
CACCACCTCCACCTTCAGCAACACGCAGTGAACCACCTCCTTCTCGTTCA
GTAACACGCAGTCGACCACCACCTCCTCCTTCAGTAATACGCAGTGGACC
ACCTCCTCCACCTTCAGCAATACATAGCGGAACACCTCCAGCTACATCGA
CTAATAAATTTTTTGAGCCACCTCCTGGTGTCTCATGGTTATCTAAAAGA
AGCAATATGTTTCAACCGACCAAAAGAGAACCCCCTGCACCTGACAATCT
AAAAAGTAGCAGTGGTGATTGGCGAGTAAAACTCAAATCATGGACCGTTG
AAGATGTTTGCGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAA
TTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGA
AGAATCACTAGTAGACGCTCTTAAAATAGGTTGGTTAAAAACGTCAAGTT
CTATTCTTTTTTTAGCTGTTCTCCGTTCCCTTCGGCATTTGAAATATAGT
TCGGAATGAGATTAAATATTAAATGCTTCTTTAAAATATAGTGACTGCTC
TTGAGATACGTTCATAGATCCACTATGGCACTATGTCTGGTCCCAATTTA
GGCATTGACCAATTGCTGTCACACTTATCACATAGAAGCAAAAAAAAATA
GATTTTACACTAGTTTCAATTGCAGACATAAAACTATTTCCTTTTAGATA
ACCTTTCGTTAAGGGCTACAAACATTACACTAATTTTATCACAATTCCCG
ATTTCGCTTTGTTTTCAGAACGTATCGGTCACCGAAGGAAGATTATGAGG
AATTTAACTAAATTATTAGAAAAAGAAAAAGAAGAGAAGAGAACTAAAGA
AAAAGAGGAGGAAACGCCGGACGAATTTCTTTGTCCGATAACTCNAGAGA
AGAAGGAAACAAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTCTGT
CCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGGTAAAAA
AAGAGATTGCAAATATATAATTTTCACAGCTCTGAATTATAATCACTGTA
ATTAATTAGCGCCCCCACCCCCTTGAACCCTATTTTGGGTAACCCTACTG
CCACTGCCTTTACGAAGACTGATATTATAATTTGTGAATTTTACCACTCT
TTGAAGCATTTCGAAAATCTAGGATGCCTCCTCCCATTAACCTCCAAACC
CGAAGGGCTAGACTCGTGACTCCAATAAGTAGTTTCATTTCCCATCCAGA
ACGCATGCGCGTGGTTTTTCCACAAACACCGGATTAGAACTAAAAGCTAT
CACTAGATTTCAAAAAATGCAGTCCTCCAAAGCAAAGGAACCACTAGATA
CAATCAGTAGTCATGATTACAGCTTTTATAAAATATCACACCAGGCACGT
GGACTGGAAATAAGGGGCTTCACTTTTTGCTGCCTGGGAAAGGTTCGAGA
TTCTACTTTAGCCCTTCGGGCTTTAAACTCAATGCCTCCTCCCTTACAGG
GCGTTTCCCTTTGCTTAGGTACCCTTTCCTTAGGACCTTTAATCATCCTA
ATCTATTAATTTTTCTTTCTATCATTCTTTAGACGGTTACACATACGAAC
GAACATCAATCACTCAATGGTTTGAAACTGGAAACAATAGAAGTCCAATG
ACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAATAGATCCCTTAA
AGACGCTATTAACAGACATCTTGGACAGTAATTCTATGGACACGAACACA
AAAATTAAGTACAATTGTACCGGCCCTATCGTACACAACTTGTACACAAT
GTATTAATGAGTCTTTTGGCAATCGATCAAGATTCCGTGGGACTTTTGAT
ATTTTGATCAAACTGATTTGATAAAACAAAACGTAATGAACTACCATTTA
GCTATATCAACTTAAAAATTTATTAGATATAACACAGTTTAATTTCGATA
ATTTGAATAAAAAAACTCGCAAATAAATACACTTCCATGAAACGAAAATA
AAATCCAACAATTGTTAATTTTTCTTAAAGAAAATAGTTTTTATGAACCA
AAACAAAAGGCCATCATTGGTAAATTTCTTNTTGGAATAACTGCAAGGGT
GGTGGTGTTTGTAGAAAATGTCCAAAATTGCAGTTACTCCACATAGTGTT
AAGGAGTAACTGCAAGACCCCCCCCCCTGGTGGACTGGAAATGAGGGGCT
TCACTTTTTGCTGCCTGGGAAAGGTTCGAGATTCTACTTTAGCCCTTCGG
GCTTTAAACTCAATGCCTCCCTCCCTTACAGGGCGTTTCCCTTTGCATAG
GTACCCTTTCCTTAGGACCTTTAATCATCCTAATCTATTAATTTTTCTTT
CTATCATTCTTTAGACGGTTACACATACGAACGAACATCAATCACTCAAT
GGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTTACCGTTGGAA
AACCGAAACCTCGTTCCAAATAGATCCCTTAAAGACGCTATTAACAGACA
TCTTGGACAGTAATTCTATGGACACGAACACAAAAATTAAGTACAATTGT
ACCGGCCCTATCGTACACAACTTGTACACAATGTATTAATGAGTCTTTTG
GCAATCGATCAAGATTCCGTGGGACTTTTGATATTTTGATCAAACTGATT
TGATAAAACAAAACGTAATGAACTACCATTTAGCTATATCAACTTAAAAA
TTTATTAGATATAACACAGTTTAATTTCGATAATTTGAATAAAAAAACTC
GCAAATAAATACACTTCCATGAAACGAAAATAAAATCCAACAATTGTTAA
TTTTTCTTAAAGAAAATAGTTTTTATGAACCAAAACAAAAGGCCATCATT
GGTAAATTTCTTCATCTACGTATTTTTCATATCAACAGTTTCAACTCCAA
GCCGAGTCCAAAATATAGTATTGCGTTCGTAATATTTTAAGGTCTTGATA
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012574-exon-sc0000145-1575043694:482961..484179 | TCONS_00012574-exon-sc0000145-1575043694:482961..484179 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1575043694:481551..482750 | TCONS_00012574-exon-sc0000145-1575043694:481551..482750 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1575043694:480987..481211 | TCONS_00012574-exon-sc0000145-1575043694:480987..481211 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1575043694:479028..479615 | TCONS_00012574-exon-sc0000145-1575043694:479028..479615 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1510915933:482961..484179 | TCONS_00012574-exon-sc0000145-1510915933:482961..484179 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1510915933:481551..482750 | TCONS_00012574-exon-sc0000145-1510915933:481551..482750 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1510915933:480987..481211 | TCONS_00012574-exon-sc0000145-1510915933:480987..481211 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1510915933:479028..479615 | TCONS_00012574-exon-sc0000145-1510915933:479028..479615 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1491911889:482961..484179 | TCONS_00012574-exon-sc0000145-1491911889:482961..484179 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1491911889:481551..482750 | TCONS_00012574-exon-sc0000145-1491911889:481551..482750 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1491911889:480987..481211 | TCONS_00012574-exon-sc0000145-1491911889:480987..481211 | Clytia hemisphaerica | exon |
| TCONS_00012574-exon-sc0000145-1491911889:479028..479615 | TCONS_00012574-exon-sc0000145-1491911889:479028..479615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:479028..484179 - |
Blast
BLAST of TCONS_00012574 vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 8.997e-27 Identity = 67/168 (39.88%), Postives = 88/168 (52.38%), Query Frame = 1
Query: 2281 WTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQNEESLVDALKIERIGHRRKIMRNXXXXXXXXXXXXXXXXXXXXXPDEFLCPIXXXXXXXXXXXXXXPDEFLCPITQELMTDPVIVADGYTYERTSITQWFETGNNRSPMTNLPLENRNLVPNRSLKDAINRHL 2784
W+ EDV WL L++ +F+ + IDG ELL +ESL D LKIE +G R K++R I + + K PDEF+CPIT+ELM DPVI +DGY+YE+ ++ W SPMTNL L + L PNR+LK AINR L
Sbjct: 332 WSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRK----------------------------IEELRTKVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
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