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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012565 ID=TCONS_00012565|Name=TCONS_00012565|organism=Clytia hemisphaerica|type=transcript|length=1013bp
TTTGAATTTTTTTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGAGACT
TAATATTACAATTCTTTCTCTGGAAATCAAAAAATTtgctaaaaatcctg
aattttccgacccttagagagactttgaaaggtgaaaaaaaccgaccctt
accgtccgcacatacccatcatccatttttgatCCCCCGGGGATCTGGCT
CTCTTGCCAACAGTATATCGGAAAAGAATTAGAGACAGATTTATTGGCCA
AGAAACTCCAAGCCCCATTTTCTTTGTGTGCAAAGTTGTAAAACCAAACT
AAAAGATCAGACAGataattaaaatttatttaaattttttactaAAAGGT
ATGATTGATTGTGGTGGAATCCCCATGGCAATTGGTGTGCAATGTGATAT
GTGTACTCCAGCTCTAACAAATTTTGGGAGTGATGAattgagaaaaacat
ttttggcaCCAAGCATTGCAGGAGATTTTATTGGATGTTTGGGTGTGAGT
GAGGTTGGTGCTGGTTCTGATGTTGCAGCTATTACCACAAATGCTGTCAA
AAAAGGAGACGATTACGTCATTAATGGCAGTAAAATGTGGACAACTAATG
GTTCTCAAGCGGATTGGATTTGTTTACTTGCCAACACTGGTGGTGATAAT
CCACACATGAATAAAAGCTTGATCATCGTCCCTATGAATAGTCCTGGTGT
ATCAACATCAACTCCTTTCAAGAAACTTGGAATGAGGTCTTCAGATACCG
TTCAAACTTTCTTTGATAATGTTGTTGTGCCACAGAAATACAGAATTGGA
GATGAAGGCAAAGGTTTTTTTTACCAGATGAACCAGTTCCAAGATGAACG
ATTAGTGGCAGGTGTACAAGTTCTTTCCATCGTCGGTCGGTTGATCCAAG
AAACAGCCAATTACACGTATAGTCGAAAAGCGTTTGGACAACCGTTACTG
GACAATCAAGTAATTCACTTTCGATTGGCCGAGTTGGAAACAGAACTCGA
AGCATTGCGATCA Run BLAST on NCBI transcript from alignment at sc0000145:275664..277384- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012565 ID=TCONS_00012565|Name=TCONS_00012565|organism=Clytia hemisphaerica|type=transcript|length=1721bp|location=Sequence derived from alignment at sc0000145:275664..277384- (Clytia hemisphaerica)
TTTGAATTTTTTTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGAGACT
TAATATTACAATTCTTTCTCTGGAAATCAAAAAATTTGCTAAAAATCCTG
AATTTTCCGACCCTTAGAGAGACTTTGAAAGGTGAAAAAAACCGACCCTT
ACCGTCCGCACATACCCATCATCCATTTTTGATCCCCCGGGGATCTGGCT
CTCTTGCCAACAGTATATCGGAAAAGAATTAGAGACAGATTTATTGGCCA
AGAAACTCCAAGCCCCATTTTCTTTGTGTGCAAAGTTGTAAAACCAAACT
AAAAGATCAGACAGATAATTAAAATTTATTTAAATTTTTTACTAAAAGGT
ATGATTGATTGTGGTGGAATCCCCATGGCAATTGGTGTGCAATGTGATAT
GTGTACTCCAGCTCTAACAAATTTTGGGAGTGATGAATTGAGAAAAACAT
TTTTGGCACCAAGCATTGCAGGAGATTTTATTGGATGTTTGGGTGTGAGT
GAGGTTGGTGCTGGTTCTGATGTTGCAGCTATTACCACAAATGCTGTCAA
AAAAGGAGGTAATGTCAGTTTTTACTTATATTTTTTCTTTTTGGTGGTAC
TTCTGAAATTATTAGGAATTAGAATGCAATTTTTTGGTGAAAAGGTATGT
TTTGCAACTATATTCTGCAATTTTCTCACTAAAAATCACAATAAAAAGAA
ATTAAGATACTGTGCGAGACAAAATGATATATCTAAGCAGTAGAAAAATT
TTTTGGCGAAAAAATTCCTCAGCAGAACGTAAAAAAAACGAATTTTCTCT
ACCGTTAAGGTAATCCTCGCTGTGGTAATTCAAAGTAATTCAAATCTCTC
GACTATTTTATAAATTAATTAATTAACATTTAAATTTACTTCATTCTATA
TTTTCAGACGATTACGTCATTAATGGCAGTAAAATGTGGACAACTAATGG
TTCTCAAGCGGATTGGATTTGTTTACTTGCCAACACTGGTGGTGATAATC
CACACATGAATAAAAGCTTGATCATCGTCCCTATGAATAGTCCTGGTGTA
TCAACATCAACTCCTTTCAAGAAACTTGGAATGAGGTCTTCAGATACCGT
TCAAACTTTCTTTGATAATGTTGTTGTGCCACAGAAATACAGAATTGGAG
ATGAAGGCAAAGGTTTTTTTTACCAGATGAACCAGTTCCAAGATGAACGA
TTAGTGGCAGGTGTACAAGGTAAGATTTCTTACCCTTACACTGTAGTTTT
CCCAGTGCTTCAGCACAGTCATTTAATCACTTTCAGCACATAAACCCAAA
ATTTAACGCCAAAGTTTTCAATTTTAAACGAAAAATGTTCCCAAAACAGC
CAAAAATTATTTGGTAAAAAATTAATCGTGGGTCGAAAATGATCTTCATC
CAAAAGACTTTTACCCCCTGGATATCCGCTCCCTTGTAGATATTTAACCT
CCTGGATATCCACTTTTGAACAAAAATCGTTAACCCCCTGGATATCCGAT
ATCCTCAACAGGGGGGACGGACTATATTTCTGGAAAAGCCCATTTTACGG
CTGATTTATTTACATTCTCTCCTTTCAGTTCTTTCCATCGTCGGTCGGTT
GATCCAAGAAACAGCCAATTACACGTATAGTCGAAAAGCGTTTGGACAAC
CGTTACTGGACAATCAAGTAATTCACTTTCGATTGGCCGAGTTGGAAACA
GAACTCGAAGCATTGCGATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012565-exon-sc0000145-1575043694:276827..277384 | TCONS_00012565-exon-sc0000145-1575043694:276827..277384 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1575043694:276166..276477 | TCONS_00012565-exon-sc0000145-1575043694:276166..276477 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1575043694:275664..275806 | TCONS_00012565-exon-sc0000145-1575043694:275664..275806 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1510915933:276827..277384 | TCONS_00012565-exon-sc0000145-1510915933:276827..277384 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1510915933:276166..276477 | TCONS_00012565-exon-sc0000145-1510915933:276166..276477 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1510915933:275664..275806 | TCONS_00012565-exon-sc0000145-1510915933:275664..275806 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1491911889:276827..277384 | TCONS_00012565-exon-sc0000145-1491911889:276827..277384 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1491911889:276166..276477 | TCONS_00012565-exon-sc0000145-1491911889:276166..276477 | Clytia hemisphaerica | exon |
| TCONS_00012565-exon-sc0000145-1491911889:275664..275806 | TCONS_00012565-exon-sc0000145-1491911889:275664..275806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:275664..277384 - |
Blast
BLAST of TCONS_00012565 vs. Swiss-Prot (Human)
Match: ACADL (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADL PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.282e-33 Identity = 67/189 (35.45%), Postives = 108/189 (57.14%), Query Frame = 3
Query: 414 LTNFGSDELRKTFLAPSIAGDFIGCLGVSEVGAGSDVAAITTNAVKKGDDYVINGSKMWTTNGSQADWICLLANTGGD--NPHMNKSLIIVPMNSPGVSTSTPFKKLGMRSSDTVQTFFDNVVVPQKYRIGDEGKGFFYQMNQFQDERLVAGVQVLSIVGRLIQETANYTYSRKAFGQPLLDNQVIHFR 974
+TN GS+E K F+ AG IG + ++E GAGSD+ I TNA K G D+++NGSK++ +NGS +D + ++A T + +P SL +V G K+G+++ DT + FF+++ +P +G+E KGF+Y M + ERL+ +S + +ET NY RKAFG+ + Q + +
Sbjct: 145 ITNHGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGSLSDVVIVVAVTNHEAPSPAHGISLFLVENGMKGFIKGRKLHKMGLKAQDTAELFFEDIRLPASALLGEENKGFYYIMKELPQERLLIADVAISASEFMFEETRNYVKQRKAFGKTVAHLQTVQHK 333
The following BLAST results are available for this feature:
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