TCONS_00012553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012553
Unique NameTCONS_00012553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012553 ID=TCONS_00012553|Name=TCONS_00012553|organism=Clytia hemisphaerica|type=transcript|length=1157bp
CTCACTTATACATTCCTTATATTTTAGAGACAAAAacacaaacataaaaa
caaaaaatgtcttcttTACTCAACAAAGAGCTTGGTATCGCCGCTGGCAT
TGctgtgacgtcatttgttgCCGGTAATTTGGCTGTCCGGTATATGTCCG
CAACTCCGACCCCTCCAAAGGAACCTGTAAATCAgggaattgatttgaaa
aattcgaGGGTAGCGGACAAATACGTAAAAGAAAATTCGTTGAGAGAGCC
TGCTGTTTTGAAAGAATTGCGTGAGCATACTATAAAAAACGTTGAAGATT
ATGATATGGTATCTGATCCAtgccaaattcaatttttccgaCTTTTGTTG
AATATGTTAGATGCGAAGAAATGCATTGAAGTTGGTACCTATACTGGGTA
TAATGTCTTGAGCACCGCCCTTACCATTCCAAGTGATGGCGTTATTTACG
CCCTGGATATTAACGAGGATTATGTTAAGGAAGGGTATCCCTTTTTCGAG
AAAGCTGGCGTCAAAGATAAAATTGTGGTCAAGATTGGGCCGGCTGTGGA
ATCTTTGGATGAGTTGATCTCTAAGGGAGAAACGGAGACCTTCGATTTCA
TTTATGTGGATGCTGACAAAACCTCTTATGAAAAGTATCTAGATCGTGCT
ATGCTATTGCTTAGATGCGGTGGCATTTTAGCTTTTGATAATATGTTGCA
AGCGGGTCGAGTGGCCGATTTGACACAAGAAATGACGCCTGAGCGACGCC
ATAGAGCTGAATATATTCACAAGCTaaatcagaaattgaaattagatAAA
CGTTTTCAATTGTCTTTCTTAAACATCGCTGATGGAGTTACTCTTTGCCG
AAAGCTTTGAGCTTTGAAAGGAGCTGATAACATTTagggaaatatttttg
gagaaaatggATAATGGTTACTTTACAGACAATTAAAGGAAGGATCATTT
AAGACACGCTCATATTCGGCTAAGAAGTTATTTAGCACCTTGAAAATGGA
CATATTTTCTCAAACCATGTAAAGCTTTGGAtggattttgataattttag
gATATTTGATTTGAAACAATTACTACCCACATTGACGGATATTTAAAACT
TAGAACTTTTATAACAATTTTACAGCACTTTTATATTTAGTTTTTGGGAC
CTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00012553-protein

>TCONS_00012553-protein ID=TCONS_00012553-protein|Name=TCONS_00012553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MSSLLNKELGIAAGIAVTSFVAGNLAVRYMSATPTPPKEPVNQGIDLKNS
RVADKYVKENSLREPAVLKELREHTIKNVEDYDMVSDPCQIQFFRLLLNM
LDAKKCIEVGTYTGYNVLSTALTIPSDGVIYALDINEDYVKEGYPFFEKA
GVKDKIVVKIGPAVESLDELISKGETETFDFIYVDADKTSYEKYLDRAML
LLRCGGILAFDNMLQAGRVADLTQEMTPERRHRAEYIHKLNQKLKLDKRF
QLSFLNIADGVTLCRKL
Run BLAST on NCBI

transcript from alignment at sc0000145:199279..202247-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012553 ID=TCONS_00012553|Name=TCONS_00012553|organism=Clytia hemisphaerica|type=transcript|length=2969bp|location=Sequence derived from alignment at sc0000145:199279..202247- (Clytia hemisphaerica)
CTCACTTATACATTCCTTATATTTTAGAGACAAAAACACAAACATAAAAA
CAAAAAATGTCTTCTTTACTCAACAAAGAGCTTGGTATCGCCGCTGGCAT
TGCTGTGACGTCATTTGTTGCCGGTAATTTGGCTGTCCGGTATATGTCCG
CAACTCCGACCCCTCCAAAGGAACCTGTAAATCAGGGAATTGATTTGAAA
AATTCGAGGGTAGCGGACAAATACGTAAAAGAAAATTCGTTGAGAGAGCC
TGCTGTTTTGAAAGAATTGCGTGAGCATACTATAAAAAACGTTGAAGATT
ATGATATGGTATCTGATCCATGCCAAATTCAATTTTTCCGACTTTTGTTG
AATATGTTAGATGCGAAGAAATGCATTGAAGTTGGTACCTATACTGGGTA
TAATGTCTTGAGCACCGCCCTTACCATTCCAAGTGATGGCGTTATTTACG
CCCTGGATATTAACGAGGATTATGTTAAGGAAGGGTATCCCTTTTTCGAG
AAAGCTGGCGTCAAAGATAAAATTGTGGTCAAGATTGGGCCGGCTGTGGA
ATCTTTGGATGAGTTGATCTCTAAGGGAGAAACGGAGACCTTCGATTTCA
TTTATGTGGATGCTGACAAAACCTCTTATGAAAAGTATCTAGATCGTGCT
ATGCTATTGCTTAGATGCGGTGGCATTTTAGCTTTTGATAATATGTTGCA
AGCGGGTCGAGTGGCCGATTTGACACAAGAAATGACGCCTGAGCGACGCC
ATAGAGCTGAATATATTCACAAGCTAAATCAGAAATTGAAATTAGATAAA
CGTTTTCAATTGTCTTTCTTAAACATCGCTGATGGACTTACTCTTTGCCG
AAAACTTTGAGTGTTTTTGAAGGAGCTGGTGTTAAATCTGAATTTTGGAC
GAGATTCTTGGTGAGGATGTGTACAAATTTTGGACGAGATTACACGGTAT
CTTTTTTTACATTTAATGCAGTATATTCAGTGACTCAACAAAGACATTCC
AAGAAACTAAACAATATGACTACTGTAAGTGAATGAAATTTTTATGCTAG
GCTTTTTTAATGTAATCGGGCTATAGCGTTTTCTTTTTTTTAATTTTATA
AACTTTTTTAGTATTTTTAATTTATTTTGCATAACAATTTTTTTGACTTG
ACCTGACACTTTTTCATAGACTTTATCAACCCTTTCATGCCGCCGCTTTC
CAATTCTGAGTTTTCGCCTATTGATGACGTCAATAACGATAAAGCGTGTA
GAAACTGCTGAATATGCTTCTAAATAACAAATTTTGACTGGAATTTGCAT
AAAAATGTCTTATTTTCGTTTGGTAATTCAATTGTTTCAAAATGTCCTCT
TGAAGTTAATAGTTTTCGCGAAATTTTACATATTATAATTTACTCTTACA
AGTTGATCCACCGCGCTAAAATCTTTTTTTTCATCTTTAATAGGTTGATT
GCAATATTTAGAAAATTATTAGATATTTATACCCTTTTTATACAGTATTT
TTCCATTCAACGACTACAAAGTATTATTAAATTGTAATTTAGATTGCTGA
GAAGGAGCTTTAAGATGTTTTGGATTTTTCTCACCGGTGCTAAATTTGTT
CACCCGATTTTACGTTAGTAACTAAACTTTTGAACTTAACGAAAAACAAC
TAAGTTTTATTTTAAAATTGCGCAAAAGCTTTTCGATTAAATCATCGCTT
GTAGCATCGAAGATTTTTTTTTATCGAAAAGCTTTTGCTCAATTTTGAAA
TAAAACTTCGTTGTTTTTCTTTAAATTTAACTTTTGGAATGGCAAAATTT
CAAAGTAACTCAATTTTTGTTTCCTTTCATTTTAGAGACAAAAACACAAA
CACAAAAACATAAAAATGTCTTCTTTACTCAACAAAGAGCTTGGTATCGC
CGCTGGCATTGCTGTGACGTCATTTGTTGCCGGTAATTTGGCTGCCCGGT
ATATGTCCGCAACTCCTACCCCTCCAAAGGAACAACAATCTGCAAAGCAA
GATAATTTGAAGAAATCGCGGACAGCGGACGAATATGTAGAAGAAAATTC
GTTGAGAGAGCCTGCTGTTTTAAAAGAATTGCGTGAGTATACTTTCAAGA
ATGTCCCAATGGCTAAGATGGTGTCTGATCCATGTCAAATTCAATTTTTC
CGACTTTTGTTGAATATGTTAGATGCGAAGAAATGCATTGAAGTTGGTAC
CTATACTGGGTATAATGTCTTGAGCACCGCCCTTACCATTCCAAGTGATG
GCGTTATTTACGCCCTGGATGTTAACGAGGATTATGTTAAGGAAGGGTAT
CCCTTTTTCGAGAAAGCAGGCGTCAAAGATAAAATTGTGGTCAAGATTGG
GCCGGCTGTGGAATCTTTGGATGAGTTGATCTCTAAGGGAGAAACGGAGA
CCTTCGATTTCATTTATGTGGATGCTGATAAAATTTCATATGAAAAGTAT
TTAGATCGTGCCATACTGCTGTTGAAAAGCGGTGGCATTTTAGCTTTTGA
TAATATGTTGCAAGGTGGCTTAGTGTTAGATTTGACACAAGAAATGACGC
CTGAGCAACGCCATTCAGCCGAATTTCTCTACAAGTTAAATCAGAAACTT
AAATTAGATAACCGTTTTCAATTGTCTTTCTTAAACATCGCTGATGGAGT
TACTCTTTGCCGAAAGCTTTGAGCTTTGAAAGGAGCTGATAACATTTAGG
GAAATATTTTTGGAGAAAATGGATAATGGTTACTTTACAGACAATTAAAG
GAAGGATCATTTAAGACACGCTCATATTCGGCTAAGAAGTTATTTAGCAC
CTTGAAAATGGACATATTTTCTCAAACCATGTAAAGCTTTGGATGGATTT
TGATAATTTTAGGATATTTGATTTGAAACAATTACTACCCACATTGACGG
ATATTTAAAACTTAGAACTTTTATAACAATTTTACAGCACTTTTATATTT
AGTTTTTGGGACCTTTTTG

Coding sequence (CDS) from alignment at sc0000145:199279..202247-

>TCONS_00012553 ID=TCONS_00012553|Name=TCONS_00012553|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000145:199279..202247- (Clytia hemisphaerica)
ATCGCTGATGGAGTTACTCTTTGCCGAAAGCTTTGAATGTCTTCTTTACT
CAACAAAGAGCTTGGTATCGCCGCTGGCATTGCTGTGACGTCATTTGTTG
CCGGTAATTTGGCTGTCCGGTATATGTCCGCAACTCCGACCCCTCCAAAG
GAACCTGTAAATCAGGGAATTGATTTGAAAAATTCGAGGGTAGCGGACAA
ATACGTAAAAGAAAATTCGTTGAGAGAGCCTGCTGTTTTGAAAGAATTGC
GTGAGCATACTATAAAAAACGTTGAAGATTATGATATGGTATCTGATCCA
TGCCAAATTCAATTTTTCCGACTTTTGTTGAATATGTTAGATGCGAAGAA
ATGCATTGAAGTTGGTACCTATACTGGGTATAATGTCTTGAGCACCGCCC
TTACCATTCCAAGTGATGGCGTTATTTACGCCCTGGATATTAACGAGGAT
TATGTTAAGGAAGGGTATCCCTTTTTCGAGAAAGCTGGCGTCAAAGATAA
AATTGTGGTCAAGATTGGGCCGGCTGTGGAATCTTTGGATGAGTTGATCT
CTAAGGGAGAAACGGAGACCTTCGATTTCATTTATGTGGATGCTGACAAA
ACCTCTTATGAAAAGTATCTAGATCGTGCTATGCTATTGCTTAGATGCGG
TGGCATTTTAGCTTTTGATAATATGTTGCAAGCGGGTCGAGTGGCCGATT
TGACACAAGAAATGACGCCTGAGCGACGCCATAGAGCTGAATATATTCAC
AAGCTAAATCAGAAATTGAAATTAGATAAACGTTTTCAATTGTCTTTCTT
AAACATCGCTGATGGAGTTACTCTTTGCCGAAAGCTTTGAATGTCTTCTT
TACTCAACAAAGAGCTTGGTATCGCCGCTGGCATTGCTGTGACGTCATTT
GTTGCCGGTAATTTGGCTGTCCGGTATATGTCCGCAACTCCGACCCCTCC
AAAGGAACCTGTAAATCAGGGAATTGATTTGAAAAATTCGAGGGTAGCGG
ACAAATACGTAAAAGAAAATTCGTTGAGAGAGCCTGCTGTTTTGAAAGAA
TTGCGTGAGCATACTATAAAAAACGTTGAAGATTATGATATGGTATCTGA
TCCATGCCAAATTCAATTTTTCCGACTTTTGTTGAATATGTTAGATGCGA
AGAAATGCATTGAAGTTGGTACCTATACTGGGTATAATGTCTTGAGCACC
GCCCTTACCATTCCAAGTGATGGCGTTATTTACGCCCTGGATATTAACGA
GGATTATGTTAAGGAAGGGTATCCCTTTTTCGAGAAAGCTGGCGTCAAAG
ATAAAATTGTGGTCAAGATTGGGCCGGCTGTGGAATCTTTGGATGAGTTG
ATCTCTAAGGGAGAAACGGAGACCTTCGATTTCATTTATGTGGATGCTGA
CAAAACCTCTTATGAAAAGTATCTAGATCGTGCTATGCTATTGCTTAGAT
GCGGTGGCATTTTAGCTTTTGATAATATGTTGCAAGCGGGTCGAGTGGCC
GATTTGACACAAGAAATGACGCCTGAGCGACGCCATAGAGCTGAATATAT
TCACAAGCTAAATCAGAAATTGAAATTAGATAAACGTTTTCAATTGTCTT
TCTTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007044XLOC_007044Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012553-proteinTCONS_00012553-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012553-exon-sc0000145-1575043694:201424..202247TCONS_00012553-exon-sc0000145-1575043694:201424..202247Clytia hemisphaericaexon
TCONS_00012553-exon-sc0000145-1575043694:199279..199611TCONS_00012553-exon-sc0000145-1575043694:199279..199611Clytia hemisphaericaexon
TCONS_00012553-exon-sc0000145-1510915933:201424..202247TCONS_00012553-exon-sc0000145-1510915933:201424..202247Clytia hemisphaericaexon
TCONS_00012553-exon-sc0000145-1510915933:199279..199611TCONS_00012553-exon-sc0000145-1510915933:199279..199611Clytia hemisphaericaexon
TCONS_00012553-exon-sc0000145-1491911889:201424..202247TCONS_00012553-exon-sc0000145-1491911889:201424..202247Clytia hemisphaericaexon
TCONS_00012553-exon-sc0000145-1491911889:199279..199611TCONS_00012553-exon-sc0000145-1491911889:199279..199611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:199279..202247 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.1482	43.6881	31.6686	27.6032	36.914	25.7217	30.3728	28.8198	40.0794	44.4898	29.6941	33.3151	26.0445	27.6234	24.5953	35.6856	38.9538	28.7246	13.5172	18.3166	27.019	22.6371	34.2259	37.2034	16.4062	16.6266	27.4362	20.1318	29.7907	27.0164
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002935O-MeTrfase_3
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008171O-methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008171 O-methyltransferase activity
Blast
[Close]
BLAST of TCONS_00012553 vs. Swiss-Prot (Human)
Match: CMTD1 (Catechol O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.867e-34
Identity = 76/214 (35.51%), Postives = 125/214 (58.41%), Query Frame = 3 
Query:  219 KYVKENSLREPAVLKELREHTIKNVEDYDMVSDPC-QIQFFRLLLNMLDAKKCIEVGTYTGYNVLSTALTIPSDGVIYALDINEDYVKEGYPFFEKAGVKDKIVVKIGPAVESLDELISKGETETFDFIYVDADKTSYEKYLDRAMLLLRCGGILAFDNMLQAGRVADLTQEMTPERRHRAEYIHKLNQKLKLDKRFQLSFLNIADGVTLCRKL 857
            +Y+   S+RE   L+ LR  T++  +   M++  C Q Q    L  ++ AKK +++GT+TGY+ L+ AL +P+DG +   +++    + G P + +A  + KI +++ PA+E+LDEL++ GE  TFD   VDADK +   Y +R + LLR GGILA   +L  G+V        P+    AE +  LN++++ D R  +S L + DG+TL  K+
Sbjct:   56 QYLLSRSMREHPALRSLRLLTLEQPQGDSMMT--CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ-----PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262
The following BLAST results are available for this feature:
BLAST of TCONS_00012553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMTD15.867e-3435.51Catechol O-methyltransferase domain-containing pro... [more]
back to top