TCONS_00012464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012464
Unique NameTCONS_00012464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012464 ID=TCONS_00012464|Name=TCONS_00012464|organism=Clytia hemisphaerica|type=transcript|length=558bp
CACAGTACTTGCACCAACAAAATATCTCCAAAGACATAACAACTTGTGCA
AGTACATTCACGAGCTTCTCATGCGTGAAAACGATTTAAAGCAAGAACGC
ACCCCATGGTACGAACACCAACCACATCCAGTGGAGGAAAACGAATCCAC
CAAAATTCTCTGGGACTTTTCCATCCAGACCGACCACCAAATCGACCACA
ATAAACCCGATATCGTCGTCCTAAACAAACAAACGAAAGAAGCACTGATC
ATTGACATCGCAATTCCGTCCGACTACAACATACCCCGTAAACGAATTGA
GAAAATCCGAAATTACACCGACTTGGCAGTAGAATTAAAAACTTTATGGA
ACCTGAATAAAGTTAAAATCGTCCCAATCATAATTGGTGCAACTGGTGTG
ATACACAAAGGATTTAGTGATGATGTAGGAAATCTTggtttaaatcaaaa
taaatttaatatttcAGAGGCCCAAAAAATAACGCTGTTAGGCACAGCAC
ATGTCGTCCGAAGTTTTTTCACTTTAGCTTAAAATTTCTCTAGTTAAGCA
AATTaaga
Run BLAST on NCBI

protein sequence of TCONS_00012464-protein

>TCONS_00012464-protein ID=TCONS_00012464-protein|Name=TCONS_00012464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
TVLAPTKYLQRHNNLCKYIHELLMRENDLKQERTPWYEHQPHPVEENEST
KILWDFSIQTDHQIDHNKPDIVVLNKQTKEALIIDIAIPSDYNIPRKRIE
KIRNYTDLAVELKTLWNLNKVKIVPIIIGATGVIHKGFSDDVGNLGLNQN
KFNISEAQKITLLGTAHVVRSFFTLA
Run BLAST on NCBI

transcript from alignment at sc0000144:239679..240236

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012464 ID=TCONS_00012464|Name=TCONS_00012464|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0000144:239679..240236 (Clytia hemisphaerica)
tcttAATTTGCTTAACTAGAGAAATTTTAAGCTAAAGTGAAAAAACTTCG
GACGACATGTGCTGTGCCTAACAGCGTTATTTTTTGGGCCTCTgaaatat
taaatttattttgatttaaaccAAGATTTCCTACATCATCACTAAATCCT
TTGTGTATCACACCAGTTGCACCAATTATGATTGGGACGATTTTAACTTT
ATTCAGGTTCCATAAAGTTTTTAATTCTACTGCCAAGTCGGTGTAATTTC
GGATTTTCTCAATTCGTTTACGGGGTATGTTGTAGTCGGACGGAATTGCG
ATGTCAATGATCAGTGCTTCTTTCGTTTGTTTGTTTAGGACGACGATATC
GGGTTTATTGTGGTCGATTTGGTGGTCGGTCTGGATGGAAAAGTCCCAGA
GAATTTTGGTGGATTCGTTTTCCTCCACTGGATGTGGTTGGTGTTCGTAC
CATGGGGTGCGTTCTTGCTTTAAATCGTTTTCACGCATGAGAAGCTCGTG
AATGTACTTGCACAAGTTGTTATGTCTTTGGAGATATTTTGTTGGTGCAA
GTACTGTG

Coding sequence (CDS) from alignment at sc0000144:239679..240236

>TCONS_00012464 ID=TCONS_00012464|Name=TCONS_00012464|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at sc0000144:239679..240236 (Clytia hemisphaerica)
TTAAGCTAAAGTGAAAAAACTTCGGACGACATGTGCTGTGCCTAACAGCG
TTATTTTTTGGGCCTCTgaaatattaaatttattttgatttaaaccAAGA
TTTCCTACATCATCACTAAATCCTTTGTGTATCACACCAGTTGCACCAAT
TATGATTGGGACGATTTTAACTTTATTCAGGTTCCATAAAGTTTTTAATT
CTACTGCCAAGTCGGTGTAATTTCGGATTTTCTCAATTCGTTTACGGGGT
ATGTTGTAGTCGGACGGAATTGCGATGTCAATGATCAGTGCTTCTTTCGT
TTGTTTGTTTAGGACGACGATATCGGGTTTATTGTGGTCGATTTGGTGGT
CGGTCTGGATGGAAAAGTCCCAGAGAATTTTGGTGGATTCGTTTTCCTCC
ACTGGATGTGGTTGGTGTTCGTACCATGGGGTGCGTTCTTGCTTTAAATC
GTTTTCACGCATGAGAAGCTCGTGAATGTACTTGCACAAGTTGTTATGTC
TTTGGAGATATTTTGTTGGTGCAAGTACTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007003XLOC_007003Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012464-proteinTCONS_00012464-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012464-exon-sc0000144-1491911889:239679..240236TCONS_00012464-exon-sc0000144-1491911889:239679..240236Clytia hemisphaericaexon
TCONS_00012464-exon-sc0000144-1510915933:239679..240236TCONS_00012464-exon-sc0000144-1510915933:239679..240236Clytia hemisphaericaexon
TCONS_00012464-exon-sc0000144-1575043694:239679..240236TCONS_00012464-exon-sc0000144-1575043694:239679..240236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:239679..240236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.24759	0.19826	0	0	0.137088	0.108329	0	0.143166	0	0.106108	0	0	0.540863	0.0702114	0	0.219765	0	0.0782177	0	0.113079	0.239384	0.143822	0	0.105966	2.45072	0.923478	0	0.297521	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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