TCONS_00012445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012445
Unique NameTCONS_00012445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012445 ID=TCONS_00012445|Name=TCONS_00012445|organism=Clytia hemisphaerica|type=transcript|length=1371bp
CTTTCCTAAAAGCTCAAAGCTATATAACATGCAAAGGAATAGTTCCATTG
GATGATACAACTGTTGATAAGGTAATATGTCATCATTCAGCTTGCTTGGT
ACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAAAGGAATTTGAAC
AACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTGATTGCTGAAATT
GGTACAACAGATTGGGGTGATACAGAAAATCACTACACTCGAAAGAAGTA
TGACGTAGCACTAGCTGATTATCCATCAGTTTTATTGTTCACTCGAAAAA
GACCACCAATCAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTCA
TGGCTCATGGAAAAAACAGGAGTGCTTTTAGAGAATGAGACGTCCCTGGC
ACAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAGACCAAT
CAGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAAACTGAA
GATATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGTGTAACGT
CTACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACTATATTT
CAAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACAAGTAAGC
gaagaaaagaaaatagtttttcaaCAGAAAAtagatgttttgaaaagttt
taaaaaatatatggaaGAAGAAAATCACTGAAATCAAGAACGAGTGGCCC
CACACGAAGAAGCAGATTATTAAAAACTGTCTATTTTTCATGAATGATTT
TGGTTTACACAATACGTAACACGCCACTTAGACGactggattttttgatt
ttttgggtgCATTCTTCTTCGGTAGTGTGAAGATGATTTTCCAACGAATA
AATAACATTTTTCCCGGAAAGcGTGTTATGGCTTTGGGAACTTTTCTAAC
GATAGCAATTGGTTGCTCAAATAACAAAGGTCCGAACAACAGTTTAACAC
ACGACTTAACGAAAATGGTTTGTCCGATGACGCCTGAAAACCATGGagcA
CACAGAGGCAGCAAAGTTTACAAGCAAGTTTGTTCAACGTGTCATTCTTG
ATCATTCATgtcattttgtttatttatgaCCGGGAAAATTTACCGATGGC
CTAAAATCAGCGAAAACTGCCCCCGCCCCCCGCCAAGGATTTATGTTCTT
GAAAACTAGGCTCCACTATTTTAAATGTATATTTAATCAAGGTTCTTTTa
ttatttaataaatatttattttcattaaatttctttaacttcaattttgt
gcAACGGCCAACTAACCAAGTGAAAGATCTCTAAAACAATTTTTCTAATC
GCTAGAAAGGTTACAAACCGC
Run BLAST on NCBI

protein sequence of TCONS_00012445-protein

>TCONS_00012445-protein ID=TCONS_00012445-protein|Name=TCONS_00012445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
FLKAQSYITCKGIVPLDDTTVDKVICHHSACLVLFHHKYGYGMPEKEFEQ
LGELAAANSEVLIAEIGTTDWGDTENHYTRKKYDVALADYPSVLLFTRKR
PPIKYRGEITKSNIVSWLMEKTGVLLENETSLAQIQHQARRFMKIYLDQS
EDDKQTEVEKMITKTEDMIGNIRTDSDKALCNVYIQVMKKVLAKGRDYIS
NEPLRLRNLIRRGQVSEEKKIVFQQKIDVLKSFKKYMEEENH
Run BLAST on NCBI

transcript from alignment at sc0000144:96287..106859-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012445 ID=TCONS_00012445|Name=TCONS_00012445|organism=Clytia hemisphaerica|type=transcript|length=10573bp|location=Sequence derived from alignment at sc0000144:96287..106859- (Clytia hemisphaerica)
CTTTCCTAAAAGGTACAACTACTAAGCTTTTTATTTAATTTTCATGTTCA
CTAAAACGAGCTTTCCACTTTGCTTTTCTGTGCTCAGCGCCGTACATGCA
AACAACTTTCGATTTTAACTTAGACCATTTCCCCATTTCCCTGCCTGGCG
TCATTGCATCCTCAGCATCCTGTCCTGAAGTTCCAAAACAGTCATTTTAC
AGTTTTGATGATTTTAACAAAGGCTTCACTTACTTTAATTCTTTGTATTT
TTATATATGAAGCTCAAAGCTATATAACATGCAAAGGAATAGTTCCATTG
GATGATACAACTGTTGATAAGGTAAGATATACCTATAATATTTTTTAGAA
GAAAAATAGCTGAAAGTCTGATTGCTGAGCTAATATAATTTTCAAATTCT
TACTAATTAAAAGAAGGGCTATCATCTTTGATCTGCTGTGATTCTGTAAA
CCCGACCTTAATCAAATCGATACTGTGAAGTCGTGTAACTTGCATCAGTA
GAGGGAAACTTGCATAGCCATCAAATGACACTGACCAACAACCAAAGTAG
CAAAATTTCAGAACAATTGAATTTCGCCAGCAGCCAGGTCATAGACCTTT
TTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
AACAAAAATGGTAGAGTAGAGCTGCGAGCGGAGCTGTGTAGTTCATTTGT
TTTGAAATTTTGCTGCTTTGATTAGTCAGTCATTTGATGGCTATGCAAGT
CTCCCTCCACTGATGCAAGTTACCCGACTTCACGGTACCCAACTGATTGC
TCTTGTGGGTTTTTTGGAATAATATTTAATTTTTAATTTACTAATGGATG
TCTTGGCTTTAAACAGGTTTGTCAGATCATCACGTTTACCTATTGCATCC
ATACTGTATAGAATAGAAAGGTTCGTTTTTGAGAAATTAGGGAAAACTGC
TTTATTGAGGATGTTTTAAAACTTCAAATTTGAATATCTCAAAAAGTACT
AATCAAAAGATTATGAAATCTTGTCCAGTGACAGGTATATTTGTAATTCC
CAACTTCAATGACGTCAGCAGAAATTGGCAAAAATTGATTTTGGCCTAAA
AAAATTTCTTGCATGAATTGCTTCCTCTTAATAGGTTGCATCTTTGATAA
AATTTCATCACATTTGGATCATGACTTCTTGAGATATTCAAATTTTAAGT
TTTATGACGTCATCAAGCAGATTTTCCTTAATTTCTCAAAAGAGACAAAA
AATTAATATTATTAACAGCCATTTCTGAAATGTACATCCTAATACACTTT
TTTTGACATATAAATGACCATGCAATTTTCTGCACCAAACTTTTGGCTTT
TTTTGACATGCTACAGTTAAATATGCAGAGAAAAGAATCGATTAAAAAAC
ATTCAACTATTTTATGGTTTGTTTTATCAGGTAATATGTCATCATTCAGC
TTGCTTGGTACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAAAGG
AATTTGAACAACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTGATT
GCTGAAATTGGTACAACAGGTAGAACAAAACTTTATCGATTTATCAAGAG
TTGGGTCTGTATTTGAGAATGGTATTATCACTTTACCTCAAAAATAGCTT
CNAAGAATGGTATTATTACTTTACCTCAAAAATAGCTTCACAATTTTGAA
AATTAAAATGAGGAGGAAAAAAAGTAACTTTTTATCCTGAAAACTTAATT
TTTGGTATAAGAATACTTTAAAGCCTCCTACAGCTGTATAATTATTTTTT
CAAATTATGCTCCAAAGTTTGCCCCAAGCTGTAAATATGGATATAACCCT
TGTCAAAATATATTGAGTATTTTGGGCGAGAAACTACTATTACTTTTGGG
CTATTTGTTAAATTTAATCAAATATTTTAATTCGGGAGAGGTTTATAGTT
GTCAAGTTTATATTCTGAGGACCATTCATTTAAGTCTTAAGTCTAGTGTT
AAAACTCTGACTCAAAACTCTACCCTTCCAACCTAAGTTAGAGCGCTTCC
AAATTGTTTGTGAATTGTGGCCATAAGATTTTGTGGGAATTTCCCTTTTT
TCTCAAATATTAAGTCATTGTAGCAATGACTTAACAGAAAATTAAAAGTT
TTCAATAACAAGAATGATAAGTCTATAGAGGTTCTTTGAACCCATTGCTC
TAAAATTGTAGTCTTGAATTATTAAATTATTTCTTTCTACCTTCGCTTGC
ATTCTGCTTTAGACAGTTTTAAAGTTTTGCAACATATCTCGTTAGTAAAA
AATACCTCACGAAATTACCCCTACCACCTTGAAAGTGGTGAAATATATCC
AATCACATGGCTCGCACCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTTCGCAAAA
TTGGCAAAACCTAAATTTAAGTAACACCGATTTTCATGTTTTACATCGTA
ATGCGCTTCTTTAAAGGTATAATTTATTATGCTAGGAGGGGTGATGATAG
GTGCAAAAAATTAACGAAAATTTGGACACGCATTAATTTACCAGAGTTCA
TTTCTTTGAGAAATACAGTGAACATACTACATTTTCCTGGGAAAAAGCAG
TTAACATGCTTAATTTCCCTTGGAAAATACAGTGNAACCTAAATTTAAGT
AACACCGATTTTCATGTTCTACATCGTAATGCGCTTCTTTAAAGGTATAA
TTTATTATGCTAGGAGGGGTGATGATAGGTGCAAAAAATTAACGAAAATT
TGGACACGCATTAATTTACCTGAGTTCATTTCTTTGAGAAATACAGTGAA
CATACTACATTTTCCTGGGAAAAAGCAGTTAACATGCTTAATTTCCCTTG
GAAAATACAGTGAATACATTTCTTTTTCCTTGAAAAATACAGTGAACATA
TTTAATCTTCCTTGGGAAATACAGTGAACATGCTTCATTTTCCTTGAGAA
ATACAATGAACACATTTCATTTTCCTTGGGAAATACAGTTTAACCTGAGG
ATGAGTTAGTAAAGACTCGAAAAGCTTTGTTTAATAAAATCAAAATTTTG
GTGTTTTTTATTTATTGGAAATACAGTGAACACATTTCATTTTTCTTGAG
AAATACAGTGAACATACTTAATTCACTTGGAAAGTACAGTGAAAGTATTT
CATTTTCCTTTGAAAATATATAGTGAACATATTTCAATTTCCTTTGAAAA
TACGTTGCATACTTCATTTTCTGTGATGAATATAGTGAACACATTTCATT
TTCCTTGAAAAATACAGTGAACATGCTTAATTTGCCTTAGAAGGTACAGT
GAACATTCTTCATTTTCCTTGGGAAATACAGTGAACATACTTTACTTCAT
TTTCCTTGGGAAATACAGTGAATATGTTTCATTTTCCTAGGGAAATACAG
TGGACGCATTTCATCCCTTTGATAAATACAGTGAACATACTTCATTTTTC
TTGAGAAATACAGTGAGATACTTAATTTAATTGGGAAATACTGTTAACAC
ATTTAATCTTCCTTGAGAAGAAAAATACAGTGAACATGCTCAATTTACTT
GGGAAATACTTTACTTTACATTTGATTTCTACTGGGGATGAAATCTAAGT
CAATTTCCCAGAGGGGCTGATATTCCAGTGTATTTTCCCACCGGGGGCGA
AAATTTTGTTAAATTTTTCAGTGGGGCCAGCGGGTCAGTGACACAGGGGT
GTTTTATATTAAGGTTGAAAAGGCTTAATCGCCTTCATATTATTTTCTAG
ATTGGGGTGATACAGAAAATCACTACACTCGAAAGAAGTATGACGTAGCA
CTAGCTGATTATCCATCAGTTTTATTGTTCACTCGAAAAAGACCACCAAT
CAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTCATGGCTCATGG
AAAAAACAGGAGTGCTTTTAGGTTTGTTGAGACTACTTCTGAGTTGATTT
GGTTTTATAAAAAGACTGGCATTCAACTAAACGAAAACCTAACACCATTA
TTGAAAGAATTTTCTATAGAGTCATTAATCACAAAGAAATACTTCATCAT
ATGTCTATACTTAAGTTTTAGCAGAATTATGATTATAAAACGTCGTTAGA
GTCAAGGGAATGGAATTTTAAAACCTTCAAGATTTGTGACGGATTTTTCG
AAAAGTATTCGTCGTCCTTTTTGTAAATGATTCTCATAGATTTATACTTT
TGCCGTCTCAAGGGTCTGAAAAATGTTTGATTAACGGGCCTCGAAATCGG
ACTGTGTGGTCGTTGTAATTTTGTCTGATCATTCAAGAGGACAGAACCAA
AATTAGTTTTTAAGAATGGCTTTTCAAAATGAAAAAATATATTTACTTCA
TTCATTCTCACCAGCCACAAAGCCTCTGCCATTCAAATTCGGGAATATCT
TGTAAAAAACGTATTGCTTTCTCTAATTAGAGAATGAGACGTCCCTGGCA
CAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAGACCAATC
AGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAAACTGAAG
ATATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGTGTAACGTC
TACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACTATATTTC
AAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACAAGTAAGCG
AAGAAAAGAAAATAGTTTTTCAACAGAAAATAGATGTTTTGAAAAGTTTT
AAAAAATATATGGAAGAAGAAAATCACTGAAATCAAGAACGGTATGTTAT
TTTTTCCCTCTATTTTGAAAGATTCCTCGAAATCGGTGTCACTTTGTGTA
ACTGAAATAGAATTGAAATAAAAACAAAATATTTTATTGACGCTAGTGGG
AAAAGATGTGAAAAACCTCGTGAAAAACAACGGTACTTGCCAACATTGAC
AAATTCGACCCAAATCCACTCAAAAGTGTAAAGTATCAAAAGTTTGATTT
ATGAAAAAAAAGTAACAAGAGGAAATAAAACTATTGCCCGGTAAGTCATA
AAATAACAAAGAATTTTTTTATTGCTTTGTAGCCCTTCGTAATAAAAATA
GTTTTGCTTTCAAATTACACAAGAGCGATCACTTGTATTCCTGAATCCTA
TTTGCAGGGTTTTTGTCATTGTCAATCACTTTCTTTGTACTTTCTCCGCT
TCGATGGTCACATTTTTTAATCGAATTCAAATTAATATGATGTTGTTCCT
TACTCTCTAGAGTGGCCCCACACGAAGAAGCAGATTATTAAAAACTGTCT
ATTTTTCATGAATGATTTTGGTTTACACAATACGTAACACGCCACTTAGA
CGACTGGATTTTTTGATTTTTTGGGTGCATTCTTCTTCGGTAGTGTGAAG
ATGATTTTCCAACGAATAAATAACATTTTTCCCGGAAAGGTAAGTTCCAT
GCCGTACGGCTAACTTTCCAAAAGTTTGATCAACATTCAAAGCGTTTTTC
TGAGAGCTCATTTGTCTACTTGGATCAATTACATAATAATTTTACCAGTC
AGATTGATTAGAATGTTGATGAGAGAACTTTTTGAAAGATGTGGTAAGTA
CTGGTCAATTTTTCTCCATGGCAGACAGTATTCATCCCAAGGGTCTAAAA
TTTAGAACTGTATTGCTTGTAGACTTGTAGAGGAAGTTGCAGGCACGACG
GAAGCTTTTTATATCTGGTACGGCGAATGAGGAAATTTAAGCGATTTTAT
AGCGATTTGACGGACGAAGAGGAAAACTTCGGGTATTTTTGTGAAAATCT
GGTACGGCGGCCGCCGTACCTGCTGTACCCGTTGCGTCGTGCCTGAGTTG
TGAGCTTGAATTCAAGTTCTGGTAGTAAGCTGCTGCTATAGGGTTTCAGG
GTCTGGATTAAAAACAATTATATTGTTTGAAAGAGTAGATTGACGAAAAA
AACCTCAACGTCATCAAAGTACACATTATGCTTTTAAAAGAGCGTAATTT
GTTTTAAAACAAAAAACAGTTCCTTCTCCAAAACGTCTACTAAATCCACT
TTCTACCATTTTTTCATTTTGTTTTTCAGCGTGTTATGGCTTTGGGAACT
TTTCTAACGATAGCAATTGGTTGCTCAAATAACAAAGGTCCGAACAACAG
TTTAACACACGACTTAACGAAAATGGTTTGTCCGATGACGCCTGAAAACC
ATGGGTGAGTTTAAATGAAATATGCAAAATATACATAATCGTACATAATG
GAGTTTCTTGAGAGAGACTTGTTTTCAGTTATAAGAAAAATTCAATCAAG
ATCCATGTCTGTTGACATTAGCTCATAACTTGACAAGTATTTAGCAAATT
TAGAAAAGTTTGCCTTAACAAAAATATCTGACTCTTTCAAATAAAAGTAT
ATCAGAGGCCAATAATACTTTTTTACTCAATCGATATCAGCGAATTACAT
CATAGTATCAAATCGTAAAACACCCTCCTAACGCGTTTTCTACTCTTTTC
ATTCCCACACAGCTAAGAACTGTCAGTTGGACATTTCCAATTGGATTATC
GATAATAAGTAATAGTAAAATCATTATGACATTGAGGGAAATTAGGGATT
AATACCCCGAGTTTCATTTTAAAATACTTTGAAATAGCACCAACGAAGTG
AGGACTTTTTCAAAGTATTTCAAATGATTCGAGGGGTATTAATCTTAATT
TCGTCTTATTTGTAAACTGCGTCTTGTTTGTGGCGGGACGGCGGAAAAGA
GGGCGTATTATCAGAAATTTTTGATGGGAGCGGGGTATTACAAATCAAGC
GGGTATTACAAAATAATACTCCTCCGTAGGATAAGAGCGCTCAACCTAAA
TAAAATCAGTCATATAATTATTAAGGAAATAGCATCAGACAACTGTTTCT
ATGCACGTTAAGACGTCCGATCAGTCATTCCAGTCAATCCCTACCATAAT
TCTTCCTCTAAAATTCTGAAACCTTCGAATATACTCGCTAATAAATAGAA
TTTTCGTGGGACTGTGTTTTTCAATTTTATCACAGTGACTGTTTTTGGCA
CACTCACATTTAATCTCTCGATTTCTTTTCTCTCTTTCTTTTTTTCAGAG
CACACAGAGGCAGCAAAGTTTACAAGCAAGTTTGTTCAACGTGTCATTCT
TGATCATTCATGTCATTTTGTTTATTTATGACCGGGAAAATTTACCGATG
GCCTAAAATCAGCGAAAACTGCCCCCGCCCCCCGCCAAGGATTTATGTTC
TTGAAAACTAGGCTCCACTATTTTAAATGTATATTTAATCAAGGTTCTTT
TATTATTTAATAAATATTTATTTTCATTAAATTTCTTTAACTTCAATTTT
GTGCAACGGCCAACTAACCAAGTGAAAGATCTCTAAAACAATTTTTCTAA
TCGCTAGAAAGGTTACAAACCGC

Coding sequence (CDS) from alignment at sc0000144:96287..106859-

>TCONS_00012445 ID=TCONS_00012445|Name=TCONS_00012445|organism=Clytia hemisphaerica|type=CDS|length=3645bp|location=Sequence derived from alignment at sc0000144:96287..106859- (Clytia hemisphaerica)
AGAATGAGACGTCCCTGGCACAAATTCAACATCAAGCTAGACGATTCATG
AAGATTTATTTAGACCAATCAGAAGACGACAAACAAACTGAAGTTGAGAA
GATGATCACAAAAACTGAAGATATGATTGGAAATATTCGAACGGACTCTG
ACAAAGCCCTGTGTAACGTCTACATTCAGGTTATGAAAAAAGTCTTAGCA
AAGGGTCGGGACTATATTTCAAATGAACCTTTGAGACTGCGGAATTTGAT
CAGAAGGGGACAAGTAAGCGAAGAAAAGAAAATAGTTTTTCAACAGAAAA
TAGATGTTTTGAAAAGTTTTAAAAAATATATGGAAGAAGAAAATCACTGA
ATTGGGGTGATACAGAAAATCACTACACTCGAAAGAAGTATGACGTAGCA
CTAGCTGATTATCCATCAGTTTTATTGTTCACTCGAAAAAGACCACCAAT
CAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTCATGGCTCATGG
AAAAAACAGGAGTGCTTTTAGGTAATATGTCATCATTCAGCTTGCTTGGT
ACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAAAGGAATTTGAAC
AACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTGATTGCTGAAATT
GGTACAACAGCTCAAAGCTATATAACATGCAAAGGAATAGTTCCATTGGA
TGATACAACTGTTGATAAGTTCCTAAAAGAGAATGAGACGTCCCTGGCAC
AAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAGACCAATCA
GAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAAACTGAAGA
TATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGTGTAACGTCT
ACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACTATATTTCA
AATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACAAGTAAGCGA
AGAAAAGAAAATAGTTTTTCAACAGAAAATAGATGTTTTGAAAAGTTTTA
AAAAATATATGGAAGAAGAAAATCACTGAATTGGGGTGATACAGAAAATC
ACTACACTCGAAAGAAGTATGACGTAGCACTAGCTGATTATCCATCAGTT
TTATTGTTCACTCGAAAAAGACCACCAATCAAATACCGAGGGGAAATAAC
GAAGTCCAATATTGTTTCATGGCTCATGGAAAAAACAGGAGTGCTTTTAG
GTAATATGTCATCATTCAGCTTGCTTGGTACTTTTTCATCACAAATATGG
TTATGGAATGCCAGAAAAGGAATTTGAACAACTTGGGGAGCTGGCTGCTG
CAAATTCGGAAGTTTTGATTGCTGAAATTGGTACAACAGCTCAAAGCTAT
ATAACATGCAAAGGAATAGTTCCATTGGATGATACAACTGTTGATAAGTT
CCTAAAAGAGAATGAGACGTCCCTGGCACAAATTCAACATCAAGCTAGAC
GATTCATGAAGATTTATTTAGACCAATCAGAAGACGACAAACAAACTGAA
GTTGAGAAGATGATCACAAAAACTGAAGATATGATTGGAAATATTCGAAC
GGACTCTGACAAAGCCCTGTGTAACGTCTACATTCAGGTTATGAAAAAAG
TCTTAGCAAAGGGTCGGGACTATATTTCAAATGAACCTTTGAGACTGCGG
AATTTGATCAGAAGGGGACAAGTAAGCGAAGAAAAGAAAATAGTTTTTCA
ACAGAAAATAGATGTTTTGAAAAGTTTTAAAAAATATATGGAAGAAGAAA
ATCACTGAATTGGGGTGATACAGAAAATCACTACACTCGAAAGAAGTATG
ACGTAGCACTAGCTGATTATCCATCAGTTTTATTGTTCACTCGAAAAAGA
CCACCAATCAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTCATG
GCTCATGGAAAAAACAGGAGTGCTTTTAGGTAATATGTCATCATTCAGCT
TGCTTGGTACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAAAGGA
ATTTGAACAACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTGATTG
CTGAAATTGGTACAACAGCTCAAAGCTATATAACATGCAAAGGAATAGTT
CCATTGGATGATACAACTGTTGATAAGTTCCTAAAAGAGAATGAGACGTC
CCTGGCACAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAG
ACCAATCAGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAA
ACTGAAGATATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGTG
TAACGTCTACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACT
ATATTTCAAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACAA
GTAAGCGAAGAAAAGAAAATAGTTTTTCAACAGAAAATAGATGTTTTGAA
AAGTTTTAAAAAATATATGGAAGAAGAAAATCACTGAATTGGGGTGATAC
AGAAAATCACTACACTCGAAAGAAGTATGACGTAGCACTAGCTGATTATC
CATCAGTTTTATTGTTCACTCGAAAAAGACCACCAATCAAATACCGAGGG
GAAATAACGAAGTCCAATATTGTTTCATGGCTCATGGAAAAAACAGGAGT
GCTTTTAGGTAATATGTCATCATTCAGCTTGCTTGGTACTTTTTCATCAC
AAATATGGTTATGGAATGCCAGAAAAGGAATTTGAACAACTTGGGGAGCT
GGCTGCTGCAAATTCGGAAGTTTTGATTGCTGAAATTGGTACAACAGCTC
AAAGCTATATAACATGCAAAGGAATAGTTCCATTGGATGATACAACTGTT
GATAAGTTCCTAAAAGAGAATGAGACGTCCCTGGCACAAATTCAACATCA
AGCTAGACGATTCATGAAGATTTATTTAGACCAATCAGAAGACGACAAAC
AAACTGAAGTTGAGAAGATGATCACAAAAACTGAAGATATGATTGGAAAT
ATTCGAACGGACTCTGACAAAGCCCTGTGTAACGTCTACATTCAGGTTAT
GAAAAAAGTCTTAGCAAAGGGTCGGGACTATATTTCAAATGAACCTTTGA
GACTGCGGAATTTGATCAGAAGGGGACAAGTAAGCGAAGAAAAGAAAATA
GTTTTTCAACAGAAAATAGATGTTTTGAAAAGTTTTAAAAAATATATGGA
AGAAGAAAATCACTGAATTGGGGTGATACAGAAAATCACTACACTCGAAA
GAAGTATGACGTAGCACTAGCTGATTATCCATCAGTTTTATTGTTCACTC
GAAAAAGACCACCAATCAAATACCGAGGGGAAATAACGAAGTCCAATATT
GTTTCATGGCTCATGGAAAAAACAGGAGTGCTTTTAGGTAATATGTCATC
ATTCAGCTTGCTTGGTACTTTTTCATCACAAATATGGTTATGGAATGCCA
GAAAAGGAATTTGAACAACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGT
TTTGATTGCTGAAATTGGTACAACAGCTCAAAGCTATATAACATGCAAAG
GAATAGTTCCATTGGATGATACAACTGTTGATAAGTTCCTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006989XLOC_006989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012445-exon-sc0000144-1575043694:106848..106859TCONS_00012445-exon-sc0000144-1575043694:106848..106859Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1575043694:106539..106597TCONS_00012445-exon-sc0000144-1575043694:106539..106597Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1575043694:104341..104479TCONS_00012445-exon-sc0000144-1575043694:104341..104479Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1575043694:99789..99959TCONS_00012445-exon-sc0000144-1575043694:99789..99959Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1575043694:98919..99279TCONS_00012445-exon-sc0000144-1575043694:98919..99279Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1575043694:98271..98449TCONS_00012445-exon-sc0000144-1575043694:98271..98449Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1575043694:97506..97630TCONS_00012445-exon-sc0000144-1575043694:97506..97630Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1575043694:96287..96611TCONS_00012445-exon-sc0000144-1575043694:96287..96611Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:106848..106859TCONS_00012445-exon-sc0000144-1510915933:106848..106859Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:106539..106597TCONS_00012445-exon-sc0000144-1510915933:106539..106597Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:104341..104479TCONS_00012445-exon-sc0000144-1510915933:104341..104479Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:99789..99959TCONS_00012445-exon-sc0000144-1510915933:99789..99959Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:98919..99279TCONS_00012445-exon-sc0000144-1510915933:98919..99279Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:98271..98449TCONS_00012445-exon-sc0000144-1510915933:98271..98449Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:97506..97630TCONS_00012445-exon-sc0000144-1510915933:97506..97630Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1510915933:96287..96611TCONS_00012445-exon-sc0000144-1510915933:96287..96611Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:106848..106859TCONS_00012445-exon-sc0000144-1491911889:106848..106859Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:106539..106597TCONS_00012445-exon-sc0000144-1491911889:106539..106597Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:104341..104479TCONS_00012445-exon-sc0000144-1491911889:104341..104479Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:99789..99959TCONS_00012445-exon-sc0000144-1491911889:99789..99959Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:98919..99279TCONS_00012445-exon-sc0000144-1491911889:98919..99279Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:98271..98449TCONS_00012445-exon-sc0000144-1491911889:98271..98449Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:97506..97630TCONS_00012445-exon-sc0000144-1491911889:97506..97630Clytia hemisphaericaexon
TCONS_00012445-exon-sc0000144-1491911889:96287..96611TCONS_00012445-exon-sc0000144-1491911889:96287..96611Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012445-proteinTCONS_00012445-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:96287..106859 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14644	1.86492	1.81608	1.55895	1.14624	1.10944	1.47115	0.603595	0.875385	0.416359	1.826	0.954839	0	0	0	0	4.56002	6.17865	0	0	3.61107	5.19696	5.92549	5.84037	15.5779	12.0607	13.428	13.8251	0.075849	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011679ERp29_C
IPR012883ERp29_N
IPR012336Thioredoxin-like_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0005788endoplasmic reticulum lumen
Vocabulary: Biological Process
TermDefinition
GO:0009306protein secretion
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009306 protein secretion
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005788 endoplasmic reticulum lumen
Blast
[Close]
BLAST of TCONS_00012445 vs. Swiss-Prot (Human)
Match: ERP29 (Endoplasmic reticulum resident protein 29 OS=Homo sapiens GN=ERP29 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 1.833e-24
Identity = 66/232 (28.45%), Postives = 120/232 (51.72%), Query Frame = 3 
Query:   18 SYITCKGIVPLDDTTVDKVICHHSACLVLFHHKYGYGMPEKEFEQLGELAAANSEVLIAEIGTTDWGDTENHYTRKKYDVALADYPSVLLFTRK--RPPIKYRGEITKSNIVSWLMEKTGVLLENETSLAQIQHQARRFMKIYLDQSEDDKQTEVEKMITKTEDMIGNIRTDSDKALCNVYIQVMKKVLAKGRDYISNEPLRLRNLIRRGQVSEEKKIVFQQKIDVLKSFKK 707
            S +  KG +PLD  T  KVI      LV F  +Y YG  + EF++L E +A++ ++L+AE+G +D+GD  N    +KY +    YP   LF       P+ Y G +    I  WL +  GV L     L      A  F++    ++        + ++ + +D + +++ ++ K     Y+++M K+L +G D+ ++E  R+  LI + ++S+ KK   Q+ +++L +F+K
Sbjct:   31 SGLHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWL-KGQGVYLGMPGCLPVYDALAGEFIRASGVEAR-------QALLKQGQDNLSSVK-ETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAFQK 253
The following BLAST results are available for this feature:
BLAST of TCONS_00012445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERP291.833e-2428.45Endoplasmic reticulum resident protein 29 OS=Homo ... [more]
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