TCONS_00012443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012443
Unique NameTCONS_00012443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012443 ID=TCONS_00012443|Name=TCONS_00012443|organism=Clytia hemisphaerica|type=transcript|length=1174bp
ATATTATCCATTCTTCGAAGGTGATGTAGAGATgaaaaatctAAACAATA
CCAAAAAGTCGAAAATGAAAATGCACTGTTTCGTCTTGTTGTTGTTCTTT
GCAACATGGGAATTGGTTGAAGCGAAAGATGTTTGTGTTGAAGGTTTCGT
CATGGACAAATACTGCATTGATCTTGGTGTCCTACTTGATAACAGAGCTG
TCAGAACTCTTGAAAACCCTGAGAAACATTCAGTTCATTGCCTGGTGGAC
GTCAACTTGTGTTTAAACACTGAATTCAATGTTCTCTTACCAAACCCTTC
AGGGTCTCCAGCCTTTGCGTTGGCCCTACGACTTGACGGAGCCGGTAAGC
AAATGGCAATCGATAAAGCTAGAGTTAGTGGAATCTGCAGAAGTTGTGCT
GGTGGTGGTACAATCGAACATGGCTTCAGAGGAACCTTTATTGGAAGCAT
TGCTGAAGAAGCTACAAGTTCTAAACCAGCACTTATGGCTGTCAAAAGAA
TGGAAGTTTCACCAAAAGCTTTCAATCAGAGCAGTCTTGATGATGGTTGT
GCTGGTTTTGACAGAATGAATCTCACCTTAATCACAGATGTTGCGGGATT
CGAGAAACCAAGTATAGCGCATGGTAGCTTGATGATCGTTGGTTGGGGAT
TCCTTTTACCGACTGGTGTTGCGTCTGCTCGCCTTTTGAAACATCGTCCA
AACGCTTTATGGTTTAAGATTCATCGCATCGTTCAAGTGTTGGGTTTGAT
CGTTGCTGTCTGTGGATGGGGTGTTGCTCTCCATAACTTCGATGTGTTCA
GTGGACCGGGTACCACTTCGTACAGTCATGGTGTCCTGGGTATGACCGTC
ATGGTGCTCGGTCTTCTCCAACCTTTCAATGCTCTGATTCGACCACATCC
ACCAGAGGCTGGTGAAAAGAAAGCCCTAGCGCGTCTTATTTGGGAGATCG
TTCATAAATCGTCAGGCTATATTGCAGTCGTTTTAGCAGCCGTTACCATT
TGTTTTGGAACGTTCGTTATTTGCTGTCATAATACAGAGTTTAGAGCAGC
CTGGATCGTCACACTAGCCTGGGTGCTTTGCTTTTCGATTTACTGTGCTT
TCGATGGATATAAATANGTTAGCCTGGGTGCTTTGCTTTTCCATTTACTG
TGCTTTCGATGGATATAGATACCG
Run BLAST on NCBI

protein sequence of TCONS_00012443-protein

>TCONS_00012443-protein ID=TCONS_00012443-protein|Name=TCONS_00012443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
YYPFFEGDVEMKNLNNTKKSKMKMHCFVLLLFFATWELVEAKDVCVEGFV
MDKYCIDLGVLLDNRAVRTLENPEKHSVHCLVDVNLCLNTEFNVLLPNPS
GSPAFALALRLDGAGKQMAIDKARVSGICRSCAGGGTIEHGFRGTFIGSI
AEEATSSKPALMAVKRMEVSPKAFNQSSLDDGCAGFDRMNLTLITDVAGF
EKPSIAHGSLMIVGWGFLLPTGVASARLLKHRPNALWFKIHRIVQVLGLI
VAVCGWGVALHNFDVFSGPGTTSYSHGVLGMTVMVLGLLQPFNALIRPHP
PEAGEKKALARLIWEIVHKSSGYIAVVLAAVTICFGTFVICCHNTEFRAA
WIVTLAWVLCFSIYCAFDGYKXVSLGALLFHLLCFRWI
Run BLAST on NCBI

transcript from alignment at sc0000144:87649..89718-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012443 ID=TCONS_00012443|Name=TCONS_00012443|organism=Clytia hemisphaerica|type=transcript|length=2070bp|location=Sequence derived from alignment at sc0000144:87649..89718- (Clytia hemisphaerica)
ATATTATCCATTCTTCGAAGGTGATGTAGAGATGTACGGTGTTTCATTCT
AGTCAGCTTTTGGTAGCAGTAGAGGTTCTGTTCTTGTGGCTGGTAGAAGA
AAAACTAGTAAACTCGGTATCTTGATGCGATAACTAGACTTACAATCCGG
GGCCAAAATATTTTGAGGATTTTGGTTATTTCATCGTTCTCAGAAATTCA
AAGTTCGGGCGAGAACGTCGCTTTTAGGCTATTTGTTAAAAGTAATCGAA
TATTTTATAGACTCCCAGGCTATGTTCTGAGCCCGATCGGACCATTCTTG
AATTTTTGGATCCTCAAAAGTCTAATTTTAAAACTCAACCCTTCCGACTA
AGTTAGAGCGCTTCCAAATCGTTTGTGGCTATAAGATTTCGTGGAAAGTT
CCCTTTTTCTCAAATATTATGACCTTGATTGTAGTATTTTGACAATTGCT
CTAAAGAGAGTTTGATTGTTGAATAGTACTTATTCCCTGGTTTTCTCTCT
GGCAAAATGATAAGTTTGATTTTAAGTTTTCACTCAGTCTTTAATTATTT
GTTAAAAATTTCCAATTCGATTTAGTTGAGCAATTCGATGTTTGTAGCGT
GATTTGGTGATACGCCTTCGTGTATTAAATGCTTCAGTCAACGTTGATAT
TTGTTCTATTCTCTTGAAGTGATGTTTACTTTGCACACTGATGTTGACCA
AAGTATCGATGATTTTTTGACATAAACTTTTCAGTGCTCAGATTTCAATA
TTTCAATTTTTATGAGATGAACTCAGCTTTAGGTCCTTTAGCACCACTCC
TGGCTTTAGAAAATACTGTTTGAAATAAAATACTTGTGAAGGTATAAACA
AAGCAGAAGTATAAAAGCAATGCCTTTTGAAATCAGATTCTAGTTCTAAT
CCAATTCTCATTTTCTGTTGATTTTTCAGGAAAAATCTAAACAATACCAA
AAAGTCGAAAATGAAAATGCACTGTTTCGTCTTGTTGTTGTTCTTTGCAA
CATGGGAATTGGTTGAAGCGAAAGATGTTTGTGTTGAAGGTTTCGTCATG
GACAAATACTGCATTGATCTTGGTGTCCTACTTGATAACAGAGCTGTCAG
AACTCTTGAAAACCCTGAGAAACATTCAGTTCATTGCCTGGTGGACGTCA
ACTTGTGTTTAAACACTGAATTCAATGTTCTCTTACCAAACCCTTCAGGG
TCTCCAGCCTTTGCGTTGGCCCTACGACTTGACGGAGCCGGTAAGCAAAT
GGCAATCGATAAAGCTAGAGTTAGTGGAATCTGCAGAAGTTGTGCTGGTG
GTGGTACAATCGAACATGGCTTCAGAGGAACCTTTATTGGAAGCATTGCT
GAAGAAGCTACAAGTTCTAAACCAGCACTTATGGCTGTCAAAAGAATGGA
AGTTTCACCAAAAGCTTTCAATCAGAGCAGTCTTGATGATGGTTGTGCTG
GTTTTGACAGAATGAATCTCACCTTAATCACAGATGTTGCGGGATTCGAG
AAACCAAGTATAGCGCATGGTAGCTTGATGATCGTTGGTTGGGGATTCCT
TTTACCGACTGGTGTTGCGTCTGCTCGCCTTTTGAAACATCGTCCAAACG
CTTTATGGTTTAAGATTCATCGCATCGTTCAAGTGTTGGGTTTGATCGTT
GCTGTCTGTGGATGGGGTGTTGCTCTCCATAACTTCGATGTGTTCAGTGG
ACCGGGTACCACTTCGTACAGTCATGGTGTCCTGGGTATGACCGTCATGG
TGCTCGGTCTTCTCCAACCTTTCAATGCTCTGATTCGACCACATCCACCA
GAGGCTGGTGAAAAGAAAGCCCTAGCGCGTCTTATTTGGGAGATCGTTCA
TAAATCGTCAGGCTATATTGCAGTCGTTTTAGCAGCCGTTACCATTTGTT
TTGGAACGTTCGTTATTTGCTGTCATAATACAGAGTTTAGAGCAGCCTGG
ATCGTCACACTAGCCTGGGTGCTTTGCTTTTCGATTTACTGTGCTTTCGA
TGGATATAAATANGTTAGCCTGGGTGCTTTGCTTTTCCATTTACTGTGCT
TTCGATGGATATAGATACCG

Coding sequence (CDS) from alignment at sc0000144:87649..89718-

>TCONS_00012443 ID=TCONS_00012443|Name=TCONS_00012443|organism=Clytia hemisphaerica|type=CDS|length=2334bp|location=Sequence derived from alignment at sc0000144:87649..89718- (Clytia hemisphaerica)
GAAAAATCTAAACAATACCAAAAAGTCGAAAATGAAAATGCACTGTTTCG
TCTTGTTGTTGTTCTTTGCAACATGGGAATTGGTTGAAGCGAAAGATGTT
TGTGTTGAAGGTTTCGTCATGGACAAATACTGCATTGATCTTGGTGTCCT
ACTTGATAACAGAGCTGTCAGAACTCTTGAAAACCCTGAGAAACATTCAG
TTCATTGCCTGGTGGACGTCAACTTGTGTTTAAACACTGAATTCAATGTT
CTCTTACCAAACCCTTCAGGGTCTCCAGCCTTTGCGTTGGCCCTACGACT
TGACGGAGCCGGTAAGCAAATGGCAATCGATAAAGCTAGAGTTAGTGGAA
TCTGCAGAAGTTGTGCTGGTGGTGGTACAATCGAACATGGCTTCAGAGGA
ACCTTTATTGGAAGCATTGCTGAAGAAGCTACAAGTTCTAAACCAGCACT
TATGGCTGTCAAAAGAATGGAAGTTTCACCAAAAGCTTTCAATCAGAGCA
GTCTTGATGATGGTTGTGCTGGTTTTGACAGAATGAATCTCACCTTAATC
ACAGATGTTGCGGGATTCGAGAAACCAAGTATAGCGCATGGTAGCTTGAT
GATCGTTGGTTGGGGATTCCTTTTACCGACTGGTGTTGCGTCTGCTCGCC
TTTTGAAACATCGTCCAAACGCTTTATGGTTTAAGATTCATCGCATCGTT
CAAGTGTTGGGTTTGATCGTTGCTGTCTGTGGATGGGGTGTTGCTCTCCA
TAACTTCGATGTGTTCAGTGGACCGGGTACCACTTCGTACAGTCATGGTG
TCCTGGGTATGACCGTCATGGTGCTCGGTCTTCTCCAACCTTTCAATGCT
CTGATTCGACCACATCCACCAGAGGCTGGTGAAAAGAAAGCCCTAGCGCG
TCTTATTTGGGAGATCGTTCATAAATCGTCAGGCTATATTGCAGTCGTTT
TAGCAGCCGTTACCATTTGTTTTGGAACGTTCGTTATTTGCTGTCATAAT
ACAGAGTTTAGAGCAGCCTGGATCGTCACACTAGCCTGGGTGCTTTGCTT
TTCGATTTACTGTGCTTTCGATGGATATAAATANGTTAGCCTGGGTGCTT
TGCTTTTCCATTTACTGTGCTTTCGATGGATATAGTATTATCCATTCTTC
GAAGGTGATGTAGAGATGAAAAATCTAAACAATACCAAAAAGTCGAAAAT
GAAAATGCACTGTTTCGTCTTGTTGTTGTTCTTTGCAACATGGGAATTGG
TTGAAGCGAAAGATGTTTGTGTTGAAGGTTTCGTCATGGACAAATACTGC
ATTGATCTTGGTGTCCTACTTGATAACAGAGCTGTCAGAACTCTTGAAAA
CCCTGAGAAACATTCAGTTCATTGCCTGGTGGACGTCAACTTGTGTTTAA
ACACTGAATTCAATGTTCTCTTACCAAACCCTTCAGGGTCTCCAGCCTTT
GCGTTGGCCCTACGACTTGACGGAGCCGGTAAGCAAATGGCAATCGATAA
AGCTAGAGTTAGTGGAATCTGCAGAAGTTGTGCTGGTGGTGGTACAATCG
AACATGGCTTCAGAGGAACCTTTATTGGAAGCATTGCTGAAGAAGCTACA
AGTTCTAAACCAGCACTTATGGCTGTCAAAAGAATGGAAGTTTCACCAAA
AGCTTTCAATCAGAGCAGTCTTGATGATGGTTGTGCTGGTTTTGACAGAA
TGAATCTCACCTTAATCACAGATGTTGCGGGATTCGAGAAACCAAGTATA
GCGCATGGTAGCTTGATGATCGTTGGTTGGGGATTCCTTTTACCGACTGG
TGTTGCGTCTGCTCGCCTTTTGAAACATCGTCCAAACGCTTTATGGTTTA
AGATTCATCGCATCGTTCAAGTGTTGGGTTTGATCGTTGCTGTCTGTGGA
TGGGGTGTTGCTCTCCATAACTTCGATGTGTTCAGTGGACCGGGTACCAC
TTCGTACAGTCATGGTGTCCTGGGTATGACCGTCATGGTGCTCGGTCTTC
TCCAACCTTTCAATGCTCTGATTCGACCACATCCACCAGAGGCTGGTGAA
AAGAAAGCCCTAGCGCGTCTTATTTGGGAGATCGTTCATAAATCGTCAGG
CTATATTGCAGTCGTTTTAGCAGCCGTTACCATTTGTTTTGGAACGTTCG
TTATTTGCTGTCATAATACAGAGTTTAGAGCAGCCTGGATCGTCACACTA
GCCTGGGTGCTTTGCTTTTCGATTTACTGTGCTTTCGATGGATATAAATA
NGTTAGCCTGGGTGCTTTGCTTTTCCATTTACTGTGCTTTCGATGGATAT
AGTATTATCCATTCTTCGAAGGTGATGTAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006988XLOC_006988Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012443-proteinTCONS_00012443-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012443-exon-sc0000144-1575043694:89686..89718TCONS_00012443-exon-sc0000144-1575043694:89686..89718Clytia hemisphaericaexon
TCONS_00012443-exon-sc0000144-1575043694:87649..88789TCONS_00012443-exon-sc0000144-1575043694:87649..88789Clytia hemisphaericaexon
TCONS_00012443-exon-sc0000144-1510915933:89686..89718TCONS_00012443-exon-sc0000144-1510915933:89686..89718Clytia hemisphaericaexon
TCONS_00012443-exon-sc0000144-1510915933:87649..88789TCONS_00012443-exon-sc0000144-1510915933:87649..88789Clytia hemisphaericaexon
TCONS_00012443-exon-sc0000144-1491911889:89686..89718TCONS_00012443-exon-sc0000144-1491911889:89686..89718Clytia hemisphaericaexon
TCONS_00012443-exon-sc0000144-1491911889:87649..88789TCONS_00012443-exon-sc0000144-1491911889:87649..88789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:87649..89718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.0792	57.2255	78.3427	76.5425	54.1195	39.4181	40.986	49.8413	75.6885	70.5037	29.6972	35.7137	38.8313	28.2106	75.0744	47.6597	13.137	16.7681	47.5136	142.549	7.0899	7.71803	25.4441	22.2007	5.3408	6.66886	53.0901	24.4082	36.3855	27.3554
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006593Cyt_b561/ferric_Rdtase_TM
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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