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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012412 ID=TCONS_00012412|Name=TCONS_00012412|organism=Clytia hemisphaerica|type=transcript|length=1809bp
ggaaaaaggaaaatttcataaaaaaaagaaaaatgattattatgaaattt
tcattaacaataacaaaagaaatgaaaaaattaatcttttttttaatact
tGCAGTGAAGTTACAAAATTACTAAAAGGATTGAAAGTGAAAAAGGGTCC
CATCCCAACTGATATATGATATAACAACTTCATAATGTTGGCAACACAAA
AAACGTATTGGACTGATTATGCAGCTGATCCTGGCAATCTTCAACATCAC
CAGGttTCAAACAACCAAGACTATCTTTCTTATAACAACACAACTAACAA
CTTATCAAGCAACATCAACGACCACACCAACAATAACAATTCTGTCGCAC
AACTTgactacaacaacaacaacgactcCAATAACAACAATTACCCGACA
AACAACAACAGCAGTGTCGCACCAACAAATATAGGTGTTTTGAATTACAG
TGAAATGGGTCCACCTTGTTCCAACATCAAATGTTTTGACGGATATTCTT
CCAGTGAATACGTCAAAGATATGATCGATAAAATCAACGACAAGGACGCG
ACAAAAACGACGGGATATATTTACGACAAACCGATTGGTCCCGATTATTA
CGCACCGTGTGGCACTTACGACGTCGGAGCGACTCCGACGGGCCATTACG
ACCAAAACAATAACATGTTAGACGTAGCTGCGAACAGATACGATTCTTTC
GGCGAGATGAAGAAATCAACCATTTTGGCCAAGTTTTACAAACCTGACGG
CACGCCATTGAAAAGTCTTTGGGATAACGATGCGTTACTCAAAGAACAAC
GATCTTACAAATATGATCCGAAACCATTGGAGCGGCGTAAAAATCCGCGT
ACTTTTGTCCCAAATGATAAAAAAACGAACGATTATTGGGAAAAGCGGCG
CAAAAATAATCATGCCGCTCGCAAGTCTCGTGAAGACAGGCGGAAGAAAG
AAATCGAGGTCTTGAAGAATGTCAGTAATTTGAAGGGTGATAACATCAAA
CTAAAACTTTACGTACAGAAAATTATGGCTGAAAATCAGAACTTGAAATA
TGAAGTTGAAATGTTGAAAAGATTGTAAATTTCACGTCAAAATTCTAATC
AATGGTTGAATGTGACACTTTGAGTGCTGACACCGAGGAATGGTGCTGGA
ATCAGTAAGAAACAGTAGACCCTGCGGGGTCCCTTAGAAAAAGTCAAACA
AAATCCTGTGAACCGACGCAAACGAActagaattttgaaaagtttgtaaA
CATAActggctaaaatattaagaatgaTAGACAGATAAAATTTTAAAGGC
AAGGATTttcagaaagaaattttttttctgtttagNATATTAAGAATGAT
AGACAGGTGAAATTTTAAAGGCAAGGATTTTcagaaagaatcttttttct
gtttatgttattattttggtagattgtaatattattgatttaaaattatc
aGATTATTTTTCCTTCCAagtaaaatataatatttttgtatttagGAACT
CTTTAAAAACGTAACCTAATGTAATTTTTGTATCATACGACCTTAAAAAT
CAGAATAGTTTTATGTAAATATGAGATatcttttttgttcttttgtcacG
AAATTTTTGTAACGCGTATGACCTATTATAACCTTGTTTTATTGTAATAT
GTGTAATAAGATAATAAGTGGTTATGCATCTTGCATAAATTCCATATCAC
GGATGTTATGCTTTGACGTAATGCGttatgcaaaatttcttttatcaCGT
TATGAAATAACTTTTCATACTCGCTCTTATCTCTCAATGTACCAATGTGC
TAATACTGG Run BLAST on NCBI protein sequence of TCONS_00012412-protein >TCONS_00012412-protein ID=TCONS_00012412-protein|Name=TCONS_00012412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MLATQKTYWTDYAADPGNLQHHQVSNNQDYLSYNNTTNNLSSNINDHTNN
NNSVAQLDYNNNNDSNNNNYPTNNNSSVAPTNIGVLNYSEMGPPCSNIKC
FDGYSSSEYVKDMIDKINDKDATKTTGYIYDKPIGPDYYAPCGTYDVGAT
PTGHYDQNNNMLDVAANRYDSFGEMKKSTILAKFYKPDGTPLKSLWDNDA
LLKEQRSYKYDPKPLERRKNPRTFVPNDKKTNDYWEKRRKNNHAARKSRE
DRRKKEIEVLKNVSNLKGDNIKLKLYVQKIMAENQNLKYEVEMLKRL Run BLAST on NCBI transcript from alignment at sc0000144:278969..282062+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012412 ID=TCONS_00012412|Name=TCONS_00012412|organism=Clytia hemisphaerica|type=transcript|length=3094bp|location=Sequence derived from alignment at sc0000144:278969..282062+ (Clytia hemisphaerica)
ggaaaaaggaaaatttcataaaaaaaagaaaaatgattattatgaaattt
tcattaacaataacaaaagaaatgaaaaaattaatcttttttttaatact
tGCAGTGAAGTTACAAAATTACTAAAAGGATTGAAAGTGAAAAAGGGTCC
CATCCCAACTGATATATGATATAACAACTTCATAATGTTGGCAACACAAA
AAACGTATTGGACTGATTATGCAGCTGATCCTGGCAATCTTCAACATCAC
CAGGGTGAGTCAacacttctttatttttttgaacttttgaatttttttta
ttatttcaaaatttttatacaaattttcgATCGAACAACTTGTTTCAATT
TCTCAATTAATGTATCCTACTTGTTGGTTCAGATCTATAATTTTTAGCTC
TGCCCCATTTTACATCATACCTTCCAAACAACAAGATTCCCTAATAATGA
AATTGAATctttacaatagattaaatttaatttttgatggTTATAAACTC
ATCATGTCAATTTTTGatgcaaaatattttgggacATGACTTGAGGGCCA
GCACGTATCTTTATGTCTACGTGTCTTCTATAGTATATAAGttttcaaca
aattcaaaaaaagtagTTTTCCAGATGAGATTTGATTTGTTGGGTTTTCT
GCCACtgctacttttttcaaaatctaacgtttgatatagatttttttatt
tccacaTAGCAACGAATTCTTTATCGTGGAAAGCACTTTAAAATCACTTT
TGCAGACTTTGCAGATATAGTCTGTTAAAGAAAAGCCTTTAACTTTAGCA
TTAGACTTTCACTTTTCCATCTGCACAGTTTACATAGTATCTTTccttga
atgtttttatgatCACAAATCATTCCGGACTCGGCTTTCTTCTCCCGGAC
AAATTGTCCGGctttaaaaaacaaataattttcaacagttttgaTTAATT
TCCCCTCTCTCAATTTTTAATCGCATTCTATAGCTGAAGATCATCAAATA
ATAAAACAGTCAAGTTAAGTCCCctgcttttattttatttgtttttatca
agATCGCGTGCttgtcaaaaaatcaaaaatcaaagttcatattttttatc
tctttcatTGCTTAGAAATTAAAAAGGGGGCCATCGCGTGCTCTTCAAGT
GACAAAAGCTTCTCATTTTCCTTAttgaaatcaaatataaaaaacgaCAG
TTTTTCCCTTATTGATAAAATTGGTcactgaatttttttgtcatgCTTGT
TCGTCACCACACCATTAGTATTTTGGTTCTGTTATAAAACGGTCGAAATT
ATTTAACGTGTTTTTAACATTTAAGTCTTGTTTGCTGAAGTCTCCATCGT
TCAAAATACTTCCAACGAAAAGTTACCTCAATATTTCAGACTGCGATCTA
ATGCGATAaatctaatttaataactctgGAATTATCCTATACGCTCGTCT
AAAATGTTATAGCAACATTGTATATTATGTATTACATATTACATCGTATT
AAATATTATGTGACCATTatatctttttttccttttcagttTCAAACAAC
CAAGACTATCTTTCTTATAACAACACAACTAACAACTTATCAAGCAACAT
CAACGACCACACCAACAATAACAATTCTGTCGCACAACTTgactacaaca
acaacaacgactcCAATAACAACAATTACCCGACAAACAACAACAGCAGT
GTCGCACCAACAAATATAGGTGTTTTGAATTACAGTGAAATGGGTCCACC
TTGTTCCAACATCAAATGTTTTGACGGATATTCTTCCAGTGAATACGTCA
AAGATATGATCGATAAAATCAACGACAAGGACGCGACAAAAACGACGGGA
TATATTTACGACAAACCGATTGGTCCCGATTATTACGCACCGTGTGGCAC
TTACGACGTCGGAGCGACTCCGACGGGCCATTACGACCAAAACAATAACA
TGTTAGACGTAGCTGCGAACAGATACGATTCTTTCGGCGAGATGAAGAAA
TCAACCATTTTGGCCAAGTTTTACAAACCTGACGGCACGCCATTGAAAAG
TCTTTGGGATAACGATGCGTTACTCAAAGAACAACGATCTTACAAATATG
ATCCGAAACCATTGGAGCGGCGTAAAAATCCGCGTACTTTTGTCCCAAAT
GATAAAAAAACGAACGATTATTGGGAAAAGCGGCGCAAAAATAATCATGC
CGCTCGCAAGTCTCGTGAAGACAGGCGGAAGAAAGAAATCGAGGTCTTGA
AGAATGTCAGTAATTTGAAGGGTGATAACATCAAACTAAAACTTTACGTA
CAGAAAATTATGGCTGAAAATCAGAACTTGAAATATGAAGTTGAAATGTT
GAAAAGATTGTAAATTTCACGTCAAAATTCTAATCAATGGTTGAATGTGA
CACTTTGAGTGCTGACACCGAGGAATGGTGCTGGAATCAGTAAGAAACAG
TAGACCCTGCGGGGTCCCTTAGAAAAAGTCAAACAAAATCCTGTGAACCG
ACGCAAACGAActagaattttgaaaagtttgtaaACATAActggctaaaa
tattaagaatgaTAGACAGATAAAATTTTAAAGGCAAGGATTttcagaaa
gaaattttttttctgtttagNATATTAAGAATGATAGACAGGTGAAATTT
TAAAGGCAAGGATTTTcagaaagaatcttttttctgtttatgttattatt
ttggtagattgtaatattattgatttaaaattatcaGATTATTTTTCCTT
CCAagtaaaatataatatttttgtatttagGAACTCTTTAAAAACGTAAC
CTAATGTAATTTTTGTATCATACGACCTTAAAAATCAGAATAGTTTTATG
TAAATATGAGATatcttttttgttcttttgtcacGAAATTTTTGTAACGC
GTATGACCTATTATAACCTTGTTTTATTGTAATATGTGTAATAAGATAAT
AAGTGGTTATGCATCTTGCATAAATTCCATATCACGGATGTTATGCTTTG
ACGTAATGCGttatgcaaaatttcttttatcaCGTTATGAAATAACTTTT
CATACTCGCTCTTATCTCTCAATGTACCAATGTGCTAATACTGG Coding sequence (CDS) from alignment at sc0000144:278969..282062+ >TCONS_00012412 ID=TCONS_00012412|Name=TCONS_00012412|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at sc0000144:278969..282062+ (Clytia hemisphaerica)
ATGTTGGCAACACAAAAAACGTATTGGACTGATTATGCAGCTGATCCTGG
CAATCTTCAACATCACCAGGttTCAAACAACCAAGACTATCTTTCTTATA
ACAACACAACTAACAACTTATCAAGCAACATCAACGACCACACCAACAAT
AACAATTCTGTCGCACAACTTgactacaacaacaacaacgactcCAATAA
CAACAATTACCCGACAAACAACAACAGCAGTGTCGCACCAACAAATATAG
GTGTTTTGAATTACAGTGAAATGGGTCCACCTTGTTCCAACATCAAATGT
TTTGACGGATATTCTTCCAGTGAATACGTCAAAGATATGATCGATAAAAT
CAACGACAAGGACGCGACAAAAACGACGGGATATATTTACGACAAACCGA
TTGGTCCCGATTATTACGCACCGTGTGGCACTTACGACGTCGGAGCGACT
CCGACGGGCCATTACGACCAAAACAATAACATGTTAGACGTAGCTGCGAA
CAGATACGATTCTTTCGGCGAGATGAAGAAATCAACCATTTTGGCCAAGT
TTTACAAACCTGACGGCACGCCATTGAAAAGTCTTTGGGATAACGATGCG
TTACTCAAAGAACAACGATCTTACAAATATGATCCGAAACCATTGGAGCG
GCGTAAAAATCCGCGTACTTTTGTCCCAAATGATAAAAAAACGAACGATT
ATTGGGAAAAGCGGCGCAAAAATAATCATGCCGCTCGCAAGTCTCGTGAA
GACAGGCGGAAGAAAGAAATCGAGGTCTTGAAGAATGTCAGTAATTTGAA
GGGTGATAACATCAAACTAAAACTTTACGTACAGAAAATTATGGCTGAAA
ATCAGAACTTGAAATATGAAGTTGAAATGTTGAAAAGATTGTAAATGTTG
GCAACACAAAAAACGTATTGGACTGATTATGCAGCTGATCCTGGCAATCT
TCAACATCACCAGGttTCAAACAACCAAGACTATCTTTCTTATAACAACA
CAACTAACAACTTATCAAGCAACATCAACGACCACACCAACAATAACAAT
TCTGTCGCACAACTTgactacaacaacaacaacgactcCAATAACAACAA
TTACCCGACAAACAACAACAGCAGTGTCGCACCAACAAATATAGGTGTTT
TGAATTACAGTGAAATGGGTCCACCTTGTTCCAACATCAAATGTTTTGAC
GGATATTCTTCCAGTGAATACGTCAAAGATATGATCGATAAAATCAACGA
CAAGGACGCGACAAAAACGACGGGATATATTTACGACAAACCGATTGGTC
CCGATTATTACGCACCGTGTGGCACTTACGACGTCGGAGCGACTCCGACG
GGCCATTACGACCAAAACAATAACATGTTAGACGTAGCTGCGAACAGATA
CGATTCTTTCGGCGAGATGAAGAAATCAACCATTTTGGCCAAGTTTTACA
AACCTGACGGCACGCCATTGAAAAGTCTTTGGGATAACGATGCGTTACTC
AAAGAACAACGATCTTACAAATATGATCCGAAACCATTGGAGCGGCGTAA
AAATCCGCGTACTTTTGTCCCAAATGATAAAAAAACGAACGATTATTGGG
AAAAGCGGCGCAAAAATAATCATGCCGCTCGCAAGTCTCGTGAAGACAGG
CGGAAGAAAGAAATCGAGGTCTTGAAGAATGTCAGTAATTTGAAGGGTGA
TAACATCAAACTAAAACTTTACGTACAGAAAATTATGGCTGAAAATCAGA
ACTTGAAATATGAAGTTGAAATGTTGAAAAGATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012412-exon-sc0000144-1491911889:278969..279222 | TCONS_00012412-exon-sc0000144-1491911889:278969..279222 | Clytia hemisphaerica | exon |
| TCONS_00012412-exon-sc0000144-1510915933:278969..279222 | TCONS_00012412-exon-sc0000144-1510915933:278969..279222 | Clytia hemisphaerica | exon |
| TCONS_00012412-exon-sc0000144-1575043694:278969..279222 | TCONS_00012412-exon-sc0000144-1575043694:278969..279222 | Clytia hemisphaerica | exon |
| TCONS_00012412-exon-sc0000144-1491911889:280508..282062 | TCONS_00012412-exon-sc0000144-1491911889:280508..282062 | Clytia hemisphaerica | exon |
| TCONS_00012412-exon-sc0000144-1510915933:280508..282062 | TCONS_00012412-exon-sc0000144-1510915933:280508..282062 | Clytia hemisphaerica | exon |
| TCONS_00012412-exon-sc0000144-1575043694:280508..282062 | TCONS_00012412-exon-sc0000144-1575043694:280508..282062 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:278969..282062 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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