TCONS_00012409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012409
Unique NameTCONS_00012409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012409 ID=TCONS_00012409|Name=TCONS_00012409|organism=Clytia hemisphaerica|type=transcript|length=3364bp
atttttttcttattttttcttccctAATTTAGAATTATTTTCTTCATCCC
AAGATATTTCTGTCTTTTACCTTCTGGATCTAGCGGGCTTGAGACATCGG
TCAAGGCACTTCACAATTTGACTATAATTCACTACTTATTGAATTATTCC
AACCAGCTTTTCCGTGACTTCGATCAAACTTCGATCAATAATAAAAAACA
GTAGAACGAAAACAATTCAACATGGCGGAAGTTGAGCAACTCAATTTATC
AAACAGTAAGAATGCAAACAAGAAGAGCCCacgaaacaacaacaacaaca
acagtgaGAAGAAACCAAAAACTCAACGATCAACCTCAAAATCAGCCTCC
ACTACACCACGAACCACTCCTCGTGGTGACGATTTACCCCAAGTGACATG
CGCCAGAACGCTGGTCCCTCTCAAAGTAGAaggcgatgacgtcatcaaag
gtGATATCCATTCTTACAGAACTATCAAAGTTCTCCGAGAAGATCGCAAA
GACTTGCTGAAAAAGCTTGCAGCATTGGACGAACGCGTTGAATCTATGTT
GCGAATGAAGGGTATCTACCAACGTTTTTGTATGGCAATGCAGAATTTTT
CAACAGCTATTTTCAAGCTTGACCGTAACAACCAAGGTGTTCCTTATGTC
AACAATGTCAAAcatctggtcagtaaaatgcaCGAGGAGTTTAACACTGA
AGAAGTGAAATCGGAAAttgagaaaatgaaagaacaacAGGTTCCCTTCT
TGGATGACTTACTTGGACAATTTGGAAATTTCCAGAAACTTTGTGAAAGC
ATCATTGTGACTCACATTCATTATCACGTgacctttttggaagatttccA
TTTAGTTGCTGGAAAGATTAGAGGCATGATGAAGACCATTATCACACTTA
TGTATGACGACGAAAGTACATCTAAAGACGATGATGATAATATCATTAAA
GATCAAGATATCCAAGAAGCTGCCATCAATGATGAGGACGCAAACGAGGA
AGAAACCAAAGAAGAGTCTAACAACAACAAATCCAACAACAATGAATTGG
TCTCTGGTAATAACAAGAACACCTTGGTCATCTCCAATGGTCAACATTTA
CCATCTGTCACCAACACTGATGAACAAGAAGAAAAACCACCACAAGATCC
ATCCTCAACACCTCAAGAACTTCACCAGCTCCGTAAAGTCTTCAGTAATA
TCAACGACCTTTTAAGTCGCATCCAGCGTCTATCTCTCGGCAACCCAAGA
ATCCAATCCATGAAAGACGCTTCCTTATCCATTGCAGAGGTTTTGATTGA
TGCTGGGCCATTGGTTAAGCACTGGCAAACACAAAACATTCCCTGTATCG
ACTCTATTGAGAATTTCATTACCAAGATGCTGAAAGTGGCCACTATCCGT
CGACCTTCCGAAAAACATATCGAACAAATGAAGATGTTATTAGGAGTCTG
GGACGGGCGTGTCTTAATTGTAGCCAAATACATGGCCATCCAGAATTAAC
TTTAAACTATACATGCGTTGATAATTGAAACAAGCATGATGCTCAAATTA
AAACTGAAAACATTTTCACTTGAatcttgaatttattttttaaattttaa
ccgAATAGAGCATAGAACTTTCTGGTAAATCACAGACGATTCTAATCCTA
AATtgtttggattcatgaaagcgGTAAATTAACTTCAATATTGAATATTC
AGTagtttaacattttttttacttgtgcATGTAATTATTTTAATTGGTTC
TTTTTTGAACAGGGAAAACTCGAATTTTTCAGAACTTCAATAATATAGCA
CTCAACCCTTATCctcaaaaatacatttaaacTTTTAGAAATGCTTCAAA
TATAAAACTGCCGTTCGCCAGATGGAGATAATGTGCGTCCACTTGCTAAG
CGAACCGCAtagttatctggcacccagatgcagaCATTTATATTTGACAC
ACTGAAGGTCGTgaacattttcaacatttggaAGTTTCAAATTACGGGGT
TTCGCCACACCgccgtcaaggattttgcagtggGGACCCTCGTAAGCCCA
ACCTAAATATTTATAGGCTTACGCGTaagggtagttgaacccgactgggg
atgcggTCCGATAGAAAATTGGCCctgctccctttagagcttatTTAGCG
AGGGGGGCCgcccgccaatccgccatcggaatatgaGATAACTTGATAAC
TAGTGAACTCTATAGTGCAACATTGGGAATCGAACAAGGGGCTCTGCAAA
GAAGGCCATCCATTACCTTGCTTGAAAGCGAGATAATTTgatcaagctga
aaaatcaacTAATATAGGTTAAATTTCTTTCTTGAAAGCTACTATAACTT
CACATAGAAGAAGATTATTACGATATTATTAAAGCACAATTTATATTATA
TATGCAAACCCAGAAAAAGTAATATAAAATCACATAACATCAAACTGAAA
TTAGTTTTTATAAATGGAACCTTTAAATTTTTCAGGTATTGAGATGAAGA
TCGCAAAGAGGTTGAAAACCGTCCataactgaaaattatttttgattttg
acttttatcaaatcaaagTATATGCCGTAAACTCAGAAAGTTTGTCGCCC
ATgacctttttcattttcaatgaaccGTCATGTTCCAGCCAAGGCCAGAT
CAGTGCCGGGCCGTGAAAGTCAGGTATTACTTGAATTCTCGTCACAAAAT
GTAATGAATAATTATctaaattagaaaaataatcATAATAAATTTACTTT
CTATTTAAATTAAAAgtcactttaaaattttgggcAACCTTTTTCTTCTC
TCAGTAAAGTAATTTCATACAACATATATTGGTTTTCTGCTTGTATCTTT
TCGATAAGCATGCGTAGTTGCAagttttctttctcataatgcGCTTGCTT
GTTCAGTGTCTCTAATTCCTTACGTCGTCGGTCTTCACGTGACTTGCGTG
CGGCCACGTTGTTCTTAATTCGTTTCTGCCAATAATCTTCCGTCTTATTA
TCTTCATCAACGAATTTACGCGAGTTTTTCTTTCCCAACGGTTTCGGGTT
GTATTTATAATGTCGATTATTGTGTGATTTTCGATCTCGCATCATTAATT
TGAAATCGTAACTGCTGTTTACGTCGTAATTTTGTCCATCGTAAGGTTCA
GTTTTCGTAACTACGTTGCCGGCGCTGCAAATGTCTTTTTCGTTTCTTTG
CTCGCTactcatttttagtttttggaATTCTTATATTTTCTGATGATCTT
CCGTTATCAGTTCCAGCCAAGTTTACTTGCTTCAACTTTACTCAATTTTC
AACATCTCAAAGCAtcctaaaactcaaaaacaacgttgcatccaattttt
tttgcgCTGGCCAA
Run BLAST on NCBI

transcript from alignment at sc0000144:269495..275478+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012409 ID=TCONS_00012409|Name=TCONS_00012409|organism=Clytia hemisphaerica|type=transcript|length=5984bp|location=Sequence derived from alignment at sc0000144:269495..275478+ (Clytia hemisphaerica)
atttttttcttattttttcttccctAATTTAGAATTATTTTCTTCATCCC
AAGATATTTCTGTCTTTTACCTTCTGGATCTAGCGGGCTTGAGACATCGG
TCAAGGCACTTCACAATTTGACTATAATTCACTACTTATTGAATTATTCC
AACCAGCTTTTCCGTGACTTCGATCAAACTTCGATCAATAATAAAAAACA
GTAGAACGAAAACAATTCAACATGGCGGAAGTTGAGCAACTCAATTTATC
AAACAGTAAGAATGCAAACAAGAAGAGCCCacgaaacaacaacaacaaca
acagtgaGAAGAAACCAAAAACTCAACGATCAACCTCAAAATCAGGTATA
CTTATTATTATCACTTTTAAGTACAGAGCGTTTTTAAACGTTTCCACGTG
TCAGCAAATAACGACAATGGTTTTGAAGCAATTTTAACTTTTCACGGATA
AGATTTGAAGTATCAgccaaaaactttaattttcattcgAAGATTGTAGA
ATagtgatttttcagtttcataatttttatttcaaacatttaattagaaa
attttgaaaaaagttgtgatttttggGTCAAGACTCATGTCGGAAAATGT
CGACATCGACACGGAAAGGGTTGTAGTCAAATTCATCGTTTAGATCTAAC
CTTTGTTCTTGTATTCAACTCTTCTTTCCGTTCGCCCGTTCTTACTTTTG
CAGctttttctcgggatcggctctttagtgagtttatgtattcgagataa
atcgagggggacggtataaagcaaagttgacatgtttCCAAAATCACAGT
CCACTTTGCTTGACGACagtaaaaaaacaccaaaataccgtcgtctgtta
aGGTgggcaaaggcgatatagagctgtacatcaactatcgactttgtttt
gtgtCATTTCTCTTACCGTCGCCGTCGGGTATTAGCTTATTCTAAGACGG
AAAATGGTCATGCCTTAAATGTGACGGAGGCCGGTTTTCTATTCTTCTAC
CCTACTGTTTAATTAAATTTGTCCATTGGTttagaaaaattactttcatt
aTAGCCTCCACTACACCACGAACCACTCCTCGTGGTGACGATTTACCCCA
AGTGACATGCGCAAGAACGCTGGTCCCTCTCAAAGTAGAaggcgatgacg
tcatcaaaggtGATATCCATTCTTACAGGACTATCAAAGTTCTCCGAGAA
GATCGCAAAGACTTGTTGAAAAAGCTTGCAGCATTGGACGAACGCGTTGA
ATCTATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGTATGGCAATGC
AGAATTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAACCAAGGTGTT
CCTTATGTCAACAATGTCAAAcatctggtcagtaaaatgcaCGAGGAGTT
TAACACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaagaacaacAGG
TTCCCTTCTTGGATGACTTACTTGgacaatttgaaaatttccagaAACTT
TGTGAAAGCATCATTGTGACTCACATTCATTATCACGTgacctttttgga
agatttccATTTAGTTGCTGGAAAGATTAGAGGTAGAACGCCATTTTTAT
TAGAGGGGATTTCGAGGGAATCGAACTTTTATTCATTCCACTAATGTCtc
aaactttgaagaaaatgtaaaaaaactgTTTTCGTCTCTCGTCGGAGAAA
CTGATATTTTAACTACTTTAACCTATATATTTTTTTNAACGATCAACCTC
AAAATCAGGTATACTTATAATTATCACTTTTAAGTACAGAGCGTTTTTAA
ACGTTTCCACGTGTCAGCAAATAACGACAATGGTTTTGAAGCAATTTTAA
CTTTTCACGGATAAGATTTGAAGTATCAgccaaaaactttaattttcatt
cgAAGATTGTAGAATTGTGATTATTATCGACATAGGCACGAAAAGGGTTG
TGGTCAAATTCATCGTTTAGATCTAACCTTTGTTCTTGTATTCAACTCTC
CGTTTGTTCGCCCGTTCTTACGTTTCCAGctttttctcgggatcggctca
ttagcgagtttatgtatttgagataaatcgagggggacggtataaaggaa
agttgacatgtctccgaaatcaccgtccactttgctcgacgacggtaaaa
acaccaaaataccgtcgtctgtttaggttagcaaaggcgatatagagccg
tacattaactatcgactttgttttgtgtCATTTTTCTTACCGTCGTCTTC
GATATCATTCGATACATAAACCGTCGGGTATTAGCTTATCCTAAGACGGA
AAATGGTCATGCcttaaatgtgacggagcctggtTTTCTATTCTTCTACC
CTACTGTTTAATTAAATTTGTCCATTGGTttagaaaaattactttcatta
TAGCCTCCACTACACCACGAACCACTCCTCGGGGTGACGATGTACCCCAA
ATGACATGCGCCAGAACGCTGGTCCCTCTCAAAGTAGAaggcgatgacgt
catcaaaggtGATATCCATTCTTACAGAACTATCAAAGTTCTCCGAGAAG
ATCGCAAAGACTTGCTGAAAAAGCTTGCAGCATTGGACGAACGCGTTGAA
TCTATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGTATGGCAATGCA
GAATTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAACCAAGGTGTTC
CTTATGTCAACAATGTCAAAcatctggtcagtaaaatgcaCGAGGAGTTT
AACACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaagaacaacAGGT
TCCCTTCTTGGATGACTTACTTGGACAATTTGGAAATTTCCAGAAACTTT
GTGAAAGCATCATTGTGACTCACATTCATTATCACGTgacctttttggaa
gatttccATTTAGTTGCTGGAAAGATTAGAGGTAGAACGCCATTTTTATT
AGAGGGGATTTCGAGGGAATCGAACTTTTATTCATTCCACTAATGTCtca
aactttgaagaaaatgtaaaaaaactgTTATCGTCTCTCGTCGGAGAAAC
TGATATTTTAACTACTTTAacctatatatttttttatttgcgAATGTATA
TTCATTGTTTGGTTTTTCCCCCAGGATAAAGTAGTAAAATCTTGCAAAAT
GAGATAAATAGCCTAGCTATTAAGCTACGGTCATCAGAGGCCTGTTACCA
CTTCTTGTAGTAATTATGTAAACAATCTTTTTGACAGGCATGATGAAGAC
CATTATCACACTTATGTATGACGACGAAAGTACATCTAAAGACGATGATG
ATAATATCATTAAAGATCAAGATATCCAAGAAGCTGCCATCAATGTGAgc
attttttctgattcttatTTTTGGTCATTGTCTGTGTTCAAACATATATG
CTGGATAAGAGGGCAACTGTCTTCATTTAGGCATATATTAATGTGTCTAG
TTTAGTAGTGGAGCACGtgaaagaaaattcaaacttGAGGAGACCAGAGT
CAAAATAGTTTTCTTTCTACAACAAAATCAAGGGATCTGACCCGGTCTTC
CCGCGCTTCAAGGGTCGAAAGGTTGATTTGTTTCTCCTTGTATTCTCTAG
GATGAGGACGCAAACGAGGAAGAAACCAAAGAAGAGTCTAACAACAACAA
ATCCAACAACAATGAATTGGTCTCTGGTAATAACAAGAACACCTTGGTCA
TCTCCAATGGTCAACATTTACCATCTGTCACCAACACTGATGAACAAGAA
GAAAAACCACCACAAGATCCATCCTCAACACCTCAAGAACTTCACCAGCT
CCGTAAAGTCTTCAGTAATATCAACGACCTTTTAAGTCGCATCCAGCGTC
TATCTCTCGGCAACCCAAGAATCCAATCCATGAAAGACGCTTCCTTATCC
ATTGCAGAGGTTTTGATTGATGCTGGGCCATTGGTTAAGCACTGGCAAAC
ACAAAACATTCCCTGTATCGACTCTATTGAGAATTTCATTACCAAGATGC
TGAAAGTGGCCACTATCCGTCGACCTTCCGAAAAACATATCGAACAAATG
AAGATGTTATTAGGAGTCTGGGACGGGCGTGTCTTAATTGTAGCCAAATA
CATGGCCATCCAGAATTAACTTTAAACTATACATGCGTTGATAATTGAAA
CAAGCATGATGCTCAAATTAAAACTGAAAACATTTTCACTTGAatcttga
atttattttttaaattttaaccgAATAGAGCATAGAACTTTCTGGTAAAT
CACAGACGATTCTAATCCTAAATtgtttggattcatgaaagcgGTAAATT
AACTTCAATATTGAATATTCAGTagtttaacattttttttacttgtgcAT
GTAATTATTTTAATTGGTTCTTTTTTGAACAGGGAAAACTCGAATTTTTC
AGAACTTCAATAATATAGCACTCAACCCTTATCctcaaaaatacatttaa
acTTTTAGAAATGCTTCAAATATAAAACTGCCGTTCGCCAGATGGAGATA
ATGTGCGTCCACTTGCTAAGCGAACCGCAtagttatctggcacccagatg
cagaCATTTATATTTGACACACTGAAGGTCGTgaacattttcaacatttg
gaAGTTTCAAATTACGGGGTTTCGCCACACCgccgtcaaggattttgcag
tggGGACCCTCGTAAGCCCAACCTAAATATTTATAGGCTTACGCGTaagg
gtagttgaacccgactggggatgcggTCCGATAGAAAATTGGCCctgctc
cctttagagcttatTTAGCGAGGGGGGCCgcccgccaatccgccatcgga
atatgaGATAACTTGATAACTAGTGAACTCTATAGTGCAACATTGGGAAT
CGAACAAGGGGCTCTGCAAAGAAGGCCATCCATTACCTTGCTTGAAAGCG
AGATAATTTgatcaagctgaaaaatcaacTAATATAGGTTAAATTTCTTT
CTTGAAAGCTACTATAACTTCACATAGAAGAAGATTATTACGATATTATT
AAAGCACAATTTATATTATATATGCAAACCCAGAAAAAGTAATATAAAAT
CACATAACATCAAACTGAAATTAGTTTTTATAAATGGAACCTTTAAATTT
TTCAGGTATTGAGATGAAGATCGCAAAGAGGTTGAAAACCGTCCataact
gaaaattatttttgattttgacttttatcaaatcaaagTATATGCCGTAA
ACTCAGAAAGTTTGTCGCCCATgacctttttcattttcaatgaaccGTCA
TGTTCCAGCCAAGGCCAGATCAGTGCCGGGCCGTGAAAGTCAGGTATTAC
TTGAATTCTCGTCACAAAATGTAATGAATAATTATctaaattagaaaaat
aatcATAATAAATTTACTTTCTATTTAAATTAAAAgtcactttaaaattt
tgggcAACCTTTTTCTTCTCTCAGTAAAGTAATTTCATACAACATATATT
GGTTTTCTGCTTGTATCTTTTCGATAAGCATGCGTAGTTGCAagttttct
ttctcataatgcGCTTGCTTGTTCAGTGTCTCTAATTCCTTACGTCGTCG
GTCTTCACGTGACTTGCGTGCGGCCACGTTGTTCTTAATTCGTTTCTGCC
AATAATCTTCCGTCTTATTATCTTCATCAACGAATTTACGCGAGTTTTTC
TTTCCCAACGGTTTCGGGTTGTATTTATAATGTCGATTATTGTGTGATTT
TCGATCTCGCATCATTAATTTGAAATCGTAACTGCTGTTTACGTCGTAAT
TTTGTCCATCGTAAGGTTCAGTTTTCGTAACTACGTTGCCGGCGCTGCAA
ATGTCTTTTTCGTTTCTTTGCTCGCTactcatttttagtttttggaATTC
TTATATTTTCTGATGATCTTCCGTTATCAGTTCCAGCCAAGTTTACTTGC
TTCAACTTTACTCAATTTTCAACATCTCAAAGCAtcctaaaactcaaaaa
caacgttgcatccaattttttttgcgCTGGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006969XLOC_006969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012409-exon-sc0000144-1491911889:269495..269839TCONS_00012409-exon-sc0000144-1491911889:269495..269839Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1510915933:269495..269839TCONS_00012409-exon-sc0000144-1510915933:269495..269839Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1575043694:269495..269839TCONS_00012409-exon-sc0000144-1575043694:269495..269839Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1491911889:270549..270600TCONS_00012409-exon-sc0000144-1491911889:270549..270600Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1510915933:270549..270600TCONS_00012409-exon-sc0000144-1510915933:270549..270600Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1575043694:270549..270600TCONS_00012409-exon-sc0000144-1575043694:270549..270600Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1491911889:271950..272425TCONS_00012409-exon-sc0000144-1491911889:271950..272425Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1510915933:271950..272425TCONS_00012409-exon-sc0000144-1510915933:271950..272425Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1575043694:271950..272425TCONS_00012409-exon-sc0000144-1575043694:271950..272425Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1491911889:272732..272838TCONS_00012409-exon-sc0000144-1491911889:272732..272838Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1510915933:272732..272838TCONS_00012409-exon-sc0000144-1510915933:272732..272838Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1575043694:272732..272838TCONS_00012409-exon-sc0000144-1575043694:272732..272838Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1491911889:273095..275478TCONS_00012409-exon-sc0000144-1491911889:273095..275478Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1510915933:273095..275478TCONS_00012409-exon-sc0000144-1510915933:273095..275478Clytia hemisphaericaexon
TCONS_00012409-exon-sc0000144-1575043694:273095..275478TCONS_00012409-exon-sc0000144-1575043694:273095..275478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:269495..275478 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.85919e-08	3.04506e-08	0	4.4573e-08	0	0	0	0	1.66549e-07	2.78963e-08	1.48973	1.40446	0.102454	1.08587e-08	2.24831e-05	0.767475	5.37506	5.83866	0.555615	0.2057	0.287869	0.330999	0	0	0	0	1.17139e-07	1.21887e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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