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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012386 ID=TCONS_00012386|Name=TCONS_00012386|organism=Clytia hemisphaerica|type=transcript|length=2431bp
CAAAAATATGAGATTCTCAAAAAACGAGTCTATTAAAATGTCAAGTGTTT
TGAAATTTGCCAACGGTATGCTAAATCACGGGTTTGTTTCACTTCTTTTG
AACACGAGTCACATGGTCAACCATTTCCTGTGTTTTGATTGGTCCCATGG
TAATTGGATCCCttgttttgattggtcaataCACACTGAATCTGTCATCT
GATTGGTTGTTTACACATACCGTTTGAAAGATGACTCCGGCATCATGTGA
TTGTGTTGTGATCTGATTTCGGATCGAGAGAAGTGAGgtgaaaaagtata
aaaagcTCAGATCACTTGAAGTTCGACATCAAATAGaagtttttgctttg
agataATCAGGTAAACATTTTCATGCTGTCTTTTATAAAGCAAGAGTAAA
CTAAAGCTAAAGCAAAATCTAATATATCTAATAGAAAGGTCTCATAGATT
TAATAGTAGTCGGTTTTTATGAATTAAGATACCTATATAATTGCTTATAT
CTCTATTACACTTCCTCATTATCTTTCTTACCACAACTTACTCCTATATA
AACTACAGTAATTAACTTTCTATTCTAGAAAAGTTTATTCGACACAGTAA
AGTAATTCAATTTCTCTTTTCTCCACCAGGTATAGATTTCTATTGGAACA
CAGCCTCATCATGAAGCTTATCGTCGCTCTCTGCTTGCTTGGCCTCGCCT
GCGCTTACACCATCGAACACAAAGAAGTCATCGCCGACTCTTCATGGCAT
TTATTCAAAGGTTCACACAGTAAATATTATGCTGACATCAACGAAGAGAA
AGTCCGTTACACAATCTGGCAAGACAACTTGAGACGTATCGAAGAACACA
ACTCACAAAACAAAGATGTCGTCTTGAAAATGAACCATTTCGGTGACTTG
ACCAACACTGAATTCAGATACTTGATGAACGGTTACAGACACCAAAACAT
GACTGGATCCACCTACTTGGCACCTTCACACGCCACTGTTCCAGACACTG
TTGACTGGAGACAACAAGGATACGTCACACCTGTCAAGAACCAAGGACAA
TGTGGATCATGCTGGGCTTTCTCCACTACCGGTTCATTGGAAGGACAACA
TTTCAAGAAAACTGGAAAATTGGTCAGTTTGAGCGAACAAAACTTGGTTG
ATTGCTCTAGCAAACAAGGAAACATGGGATGCAATGGAGGTCTTATGGAT
CAAGCTTTCACCTACATCAAGAAGAACGGTGGTATCGATACCGAAGGAAG
CTATCCATACCATGCCAAGAACGAACAATGCCACTACAAATCTGCTGACA
GTGGTGCCACCGTCACCGGATTCACTGACATCCCACAAGGTGATGAAGAT
GCACTCAAATCTGCTGTTGCCACCGTTGGTCCAGTCTCTGTTGCCATCGA
TGCTTCTCACTTCTCTTTCCAATTCTATCACACTGGTGTCTACAATGAGA
AATCATGCTCTTCCACTCAATTAGATCACGGAGTCTTGGCTGTCGGTTAT
GGAACTTACCAAGGAAAAGACTACTGGCTCGTCAAGAACAGCTGGGGACC
AGGATGGGGATTAAAAGGATATATCCGCATGAGCCGTAACAAGAAAAACC
AATGTGGTATCGCTTCCTCCGCCTCATACCCACTCGTTTAAATGAGTGCC
TCCTCCACCCACATCGGGCGCAAACTTCAACACCACTCACTAACGCCCTA
ACAACTACTTAGGAAAATTTcttgtaaattatttttcataaaattatctt
ttatctagaaaaagattttaaatattttatattttttgtttacgtttttt
ttagaaaattgaaaaagataaaatcgctaaaaataatggaaaaactACCA
TTTAATCCCTTAGTAGAATTACTGTTTAAAATTCACCTAACGGTCAAAGa
ttctctcaaaaacaaaagtttcaaaaacaaggTCGTGGCTTTGCAATCTT
ACAAAAATCAGCTGAACAAACTGGGAATTCAAAACCAGCTGTAGTGAAAT
CCTTGAGTCCAACATGGTCAGGGAGGAAACAATAGAAAATGCACGAAGGG
AGTTTTTGtagtttttgtgatttttatatattcaaaatggataaagaatG
TTCCTGAGAGCATTTAAAATAGAAGTTAAAAAGAATACGTATTAAAATTT
CGCTTATTTGGACGAAGGTTTTGTGAACCATGAGACCAATCCGGATAAAG
GCCAGCTCCAATCAGATTGGTCTGGTTCTGTTCTGATTTTGGCATTATTC
GATCTTGATTTCCGATTCTTATTCTTATTCCTCTTCTTCTTCAAACAAGC
TGTTCCTTTCTGGAGATTGTTTTGAGATGTGGTAACATTCTGTTCACTGT
TGTCATTAGGTTGCAGTGTTGGATTGTCGTCCCATTCGTTTCCTGTAGAT
TGACCATCCAGAGCTATAAAGGAAAAGCAAG Run BLAST on NCBI transcript from alignment at sc0000144:188993..192087+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012386 ID=TCONS_00012386|Name=TCONS_00012386|organism=Clytia hemisphaerica|type=transcript|length=3095bp|location=Sequence derived from alignment at sc0000144:188993..192087+ (Clytia hemisphaerica)
CAAAAATATGAGATTCTCAAAAAACGAGTCTATTAAAATGTCAAGTGTTT
TGAAATTTGCCAACGGTATGCTAAATCACGGGTTTGTTTCACTTCTTTTG
AACACGAGTCACATGGTCAACCATTTCCTGTGTTTTGATTGGTCCCATGG
TAATTGGATCCCttgttttgattggtcaataCACACTGAATCTGTCATCT
GATTGGTTGTTTACACATACCGTTTGAAAGATGACTCCGGCATCATGTGA
TTGTGTTGTGATCTGATTTCGGATCGAGAGAAGTGAGgtgaaaaagtata
aaaagcTCAGATCACTTGAAGTTCGACATCAAATAGaagtttttgctttg
agataATCAGGTAAACATTTTCATGCTGTCTTTTATAAAGCAAGAGTAAA
CTAAAGCTAAAGCAAAATCTAATATATCTAATAGAAAGGTCTCATAGATT
TAATAGTAGTCGGTTTTTATGAATTAAGATACCTATATAATTGCTTATAT
CTCTATTACACTTCCTCATTATCTTTCTTACCACAACTTACTCCTATATA
AACTACAGTAATTAACTTTCTATTCTAGAAAAGTTTATTCGACACAGTAA
AGTAATTCAATTTCTCTTTTCTCCACCAGGTATAGATTTCTATTGGAACA
CAGCCTCATCATGAAGCTTATCGTCGCTCTCTGCTTGCTTGGCCTCGCCT
GCGCTTACACCATCGAACACAAAGAAGTCATCGCCGACTCTTCATGGCAT
TTATTCAAAGGTTCACACAGTAAATATTATGCTGACATCAACGAAGAGAA
AGTCCGTTACACAATCTGGCAAGACAACTTGAGACGTATCGAAGAACACA
ACTCACAAAACAAAGATGTCGTCTTGAAAATGAACCATTTCGGTGACTTG
ACCAACACTGAATTCAGATACTTGATGAACGGTTACAGACACCAAAACAT
GACTGGATCCACCTACTTGGCACCTTCACACGCCACTGTTCCAGACACTG
TTGACTGGAGACAACAAGGATACGTCACACCTGTCAAGAACCAAGGACAA
TGTGGATCATGCTGGGCTTTCTCCACTGTAAGATTCTTGgctttcttctt
ctttcattttccaTATAAAACTATTCCAGGATCAACTGTTGTTTGCTATA
CATGATTGTATACGTTCGCTAATGAGTAGTTTTTTTTTGTACTTTCAAGT
ACAACGTTTTCCTTTTGTGTAAATCAAGACTCCAACAGTTATTTTGACTT
TATCTAATCTAAAATCATTCCATTTCTTTATATTTTAGCTCTTTATTTTA
TCTCGAATTCCTATTTCTTTATAGACCGGTTCATTGGAAGGACAACATTT
CAAGAAAACTGGAAAATTGGTCAGTTTGAGCGAACAAAACTTGGTTGATT
GCTCTAGCAAACAAGGAAACATGGGATGCAATGGAGGTCTTATGGATCAA
GCTTTCACCTACATCAAGAAGAACGGTGGTATCGATACCGAAGGAAGCTA
TCCATACCATGCCAAGGTAACGTCTTTGTAAGGAGgtcttttgaaaaatc
attatttgaatcagaatgtatttttttctctttacttCTGATCTTAAGTA
CAATTATGATATCCATTTAAAGTAGAACCGCTCAAAATACTAGTTTTATA
GTCTATTAAAATACAGAATACATACAGAATACAGAAATGCAGAATAAATA
CAGAAATTAATTTTCATATGATATCCTTCCCATCCACAGAACGAACAATG
CCACTACAAATCTGCTGACAGTGGTGCCACCGTCACCGGATTCACTGACA
TCCCACAAGGTGATGAAGATGCACTCAAATCTGCTGTTGCCACCGTTGGT
CCAGTCTCTGTTGCCATCGATGCTTCTCACTTCTCTTTCCAATTCTATCA
CACTGGTGTCTACAATGAGAAATCATGCTCTTCCACTCAATTAGATCACG
GAGTCTTGGCTGTCGGTTATGGAACTTACCAAGGAAAAGACTACTGGCTC
GTCAAGAACAGGTACGAACTGCTTCAAATTTAGACAGAAATCTTTTTTGA
GAATGTCAAACTATTGTTGAGAGGTAAACGTAAAGTTAAATACAAGCTTT
CCAACGAGCGTCAATGACAATCAATGATTTTCTGGATGCTTGATAATTTA
ATTTTGTTGATTGTATTAATGTTTAATGAataaattcttcttttcttcct
tttagCTGGGGACCAGGATGGGGATTAAAAGGATATATCCGCATGAGCCG
TAACAAGAAAAACCAATGTGGTATCGCTTCCTCCGCCTCATACCCACTCG
TTTAAATGAGTGCCTCCTCCACCCACATCGGGCGCAAACTTCAACACCAC
TCACTAACGCCCTAACAACTACTTAGGAAAATTTcttgtaaattattttt
cataaaattatcttttatctagaaaaagattttaaatattttatattttt
tgtttacgttttttttagaaaattgaaaaagataaaatcgctaaaaataa
tggaaaaactACCATTTAATCCCTTAGTAGAATTACTGTTTAAAATTCAC
CTAACGGTCAAAGattctctcaaaaacaaaagtttcaaaaacaaggTCGT
GGCTTTGCAATCTTACAAAAATCAGCTGAACAAACTGGGAATTCAAAACC
AGCTGTAGTGAAATCCTTGAGTCCAACATGGTCAGGGAGGAAACAATAGA
AAATGCACGAAGGGAGTTTTTGtagtttttgtgatttttatatattcaaa
atggataaagaatGTTCCTGAGAGCATTTAAAATAGAAGTTAAAAAGAAT
ACGTATTAAAATTTCGCTTATTTGGACGAAGGTTTTGTGAACCATGAGAC
CAATCCGGATAAAGGCCAGCTCCAATCAGATTGGTCTGGTTCTGTTCTGA
TTTTGGCATTATTCGATCTTGATTTCCGATTCTTATTCTTATTCCTCTTC
TTCTTCAAACAAGCTGTTCCTTTCTGGAGATTGTTTTGAGATGTGGTAAC
ATTCTGTTCACTGTTGTCATTAGGTTGCAGTGTTGGATTGTCGTCCCATT
CGTTTCCTGTAGATTGACCATCCAGAGCTATAAAGGAAAAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012386-exon-sc0000144-1491911889:188993..190069 | TCONS_00012386-exon-sc0000144-1491911889:188993..190069 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1510915933:188993..190069 | TCONS_00012386-exon-sc0000144-1510915933:188993..190069 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1575043694:188993..190069 | TCONS_00012386-exon-sc0000144-1575043694:188993..190069 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1491911889:190317..190508 | TCONS_00012386-exon-sc0000144-1491911889:190317..190508 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1510915933:190317..190508 | TCONS_00012386-exon-sc0000144-1510915933:190317..190508 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1575043694:190317..190508 | TCONS_00012386-exon-sc0000144-1575043694:190317..190508 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1491911889:190732..191003 | TCONS_00012386-exon-sc0000144-1491911889:190732..191003 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1510915933:190732..191003 | TCONS_00012386-exon-sc0000144-1510915933:190732..191003 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1575043694:190732..191003 | TCONS_00012386-exon-sc0000144-1575043694:190732..191003 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1491911889:191198..192087 | TCONS_00012386-exon-sc0000144-1491911889:191198..192087 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1510915933:191198..192087 | TCONS_00012386-exon-sc0000144-1510915933:191198..192087 | Clytia hemisphaerica | exon |
| TCONS_00012386-exon-sc0000144-1575043694:191198..192087 | TCONS_00012386-exon-sc0000144-1575043694:191198..192087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:188993..192087 + |
Blast
BLAST of TCONS_00012386 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2) HSP 1 Score: 364.385 bits (934), Expect = 4.474e-118 Identity = 182/336 (54.17%), Postives = 233/336 (69.35%), Query Frame = 1
Query: 661 MKLIVALCLLGLACAYTIEHKEVIADSSWHLFKGSHSKYYADINEEKVRYTIWQDNLRRIEEHN---SQNK-DVVLKMNHFGDLTNTEFRYLMNGYRHQNM-TGSTYLAPSHATVPDTVDWRQQGYVTPVKNQGQCGSCWAFSTTGSLEGQHFKKTGKLVSLSEQNLVDCSSKQGNMGCNGGLMDQAFTYIKKNGGIDTEGSYPYHAKNEQCHYKSADSGATVTGFTDIPQGDEDALKSAVATVGPVSVAIDASHFSFQFYHTGVYNEKSCSSTQLDHGVLAVGYGTYQGKD-----YWLVKNSWGPGWGLKGYIRMSRNKKNQCGIASSASYPLV 1638
+ L++A LG+A A + + D+ W+ +K +H + Y NEE R +W+ N++ IE HN SQ K + MN FGD+TN EFR +M +R+Q G + P +P +VDWR++GYVTPVKNQ QCGSCWAFS TG+LEGQ F+KTGKLVSLSEQNLVDCS QGN GCNGG M +AF Y+K+NGG+D+E SYPY A +E C Y+ +S A TGFT + G E AL AVATVGP+SVA+DA H SFQFY +G+Y E CSS LDHGVL VGYG ++G + YWLVKNSWGP WG GY++++++K N CGIA++ASYP V
Sbjct: 3 LSLVLAAFCLGIASA--VPKFDQNLDTKWYQWKATHRRLYG-ANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYG-FEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
The following BLAST results are available for this feature:
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