TCONS_00012344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012344
Unique NameTCONS_00012344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012344 ID=TCONS_00012344|Name=TCONS_00012344|organism=Clytia hemisphaerica|type=transcript|length=562bp
TGAGCGTTGAGCAGCGAAAAGCAAACGAACTCGCTTCTTGCAAAGGTGCT
TCAAGCTGGTTGACGATCATACCGGTTGAAAGTGAAGGCTTCTGTCTGAA
TAAAAGGGAATTTGTTGATGCCCTTTGCTTGAGGTACAGATGGAAACCGA
AATACCTTCCGATCAATTGTGCATGTGGCCTTCGATTCGATGTCGACCAT
GCCCTTTCCTGTCCGAAAGGAGGTTTCATCTACCAACGCCATGACAAGAT
GAGAAACCTCTTGGCCAACCTCCTTTCACAAGTACACACTGACGTCTCCA
TCGAACCTCACCTACAACCTCTAACTGGAGAATCACTACCAAACAGCTCC
AACAAAACAGACGAAGCCCGACTTGACGTGTCAGCCAGAAGTTTTTGACA
AAGGGGACAACttgcattttttgacgtaaggATCATAAATCCGTTCGCAA
AAAGTCACTTTAACCAGAAACTTCAAAACATATTCCGATCGAACGAACAA
GAGAAAAAGCGGAAGTACAACAACCGAATCATCACAGTCGAGCACGGTTC
GTTCAGCCCGTT
Run BLAST on NCBI

protein sequence of TCONS_00012344-protein

>TCONS_00012344-protein ID=TCONS_00012344-protein|Name=TCONS_00012344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
SVEQRKANELASCKGASSWLTIIPVESEGFCLNKREFVDALCLRYRWKPK
YLPINCACGLRFDVDHALSCPKGGFIYQRHDKMRNLLANLLSQVHTDVSI
EPHLQPLTGESLPNSSNKTDEARLDVSARSF
Run BLAST on NCBI

transcript from alignment at sc0000143:587530..588091

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012344 ID=TCONS_00012344|Name=TCONS_00012344|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0000143:587530..588091 (Clytia hemisphaerica)
AACGGGCTGAACGAACCGTGCTCGACTGTGATGATTCGGTTGTTGTACTT
CCGCTTTTTCTCTTGTTCGTTCGATCGGAATATGTTTTGAAGTTTCTGGT
TAAAGTGACTTTTTGCGAACGGATTTATGATccttacgtcaaaaaatgca
aGTTGTCCCCTTTGTCAAAAACTTCTGGCTGACACGTCAAGTCGGGCTTC
GTCTGTTTTGTTGGAGCTGTTTGGTAGTGATTCTCCAGTTAGAGGTTGTA
GGTGAGGTTCGATGGAGACGTCAGTGTGTACTTGTGAAAGGAGGTTGGCC
AAGAGGTTTCTCATCTTGTCATGGCGTTGGTAGATGAAACCTCCTTTCGG
ACAGGAAAGGGCATGGTCGACATCGAATCGAAGGCCACATGCACAATTGA
TCGGAAGGTATTTCGGTTTCCATCTGTACCTCAAGCAAAGGGCATCAACA
AATTCCCTTTTATTCAGACAGAAGCCTTCACTTTCAACCGGTATGATCGT
CAACCAGCTTGAAGCACCTTTGCAAGAAGCGAGTTCGTTTGCTTTTCGCT
GCTCAACGCTCA

Coding sequence (CDS) from alignment at sc0000143:587530..588091

>TCONS_00012344 ID=TCONS_00012344|Name=TCONS_00012344|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000143:587530..588091 (Clytia hemisphaerica)
TCAAAAACTTCTGGCTGACACGTCAAGTCGGGCTTCGTCTGTTTTGTTGG
AGCTGTTTGGTAGTGATTCTCCAGTTAGAGGTTGTAGGTGAGGTTCGATG
GAGACGTCAGTGTGTACTTGTGAAAGGAGGTTGGCCAAGAGGTTTCTCAT
CTTGTCATGGCGTTGGTAGATGAAACCTCCTTTCGGACAGGAAAGGGCAT
GGTCGACATCGAATCGAAGGCCACATGCACAATTGATCGGAAGGTATTTC
GGTTTCCATCTGTACCTCAAGCAAAGGGCATCAACAAATTCCCTTTTATT
CAGACAGAAGCCTTCACTTTCAACCGGTATGATCGTCAACCAGCTTGAAG
CACCTTTGCAAGAAGCGAGTTCGTTTGCTTTTCGCTGCTCAACGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006951XLOC_006951Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012344-proteinTCONS_00012344-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012344-exon-sc0000143-1491911889:587530..588091TCONS_00012344-exon-sc0000143-1491911889:587530..588091Clytia hemisphaericaexon
TCONS_00012344-exon-sc0000143-1510915933:587530..588091TCONS_00012344-exon-sc0000143-1510915933:587530..588091Clytia hemisphaericaexon
TCONS_00012344-exon-sc0000143-1575043694:587530..588091TCONS_00012344-exon-sc0000143-1575043694:587530..588091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:587530..588091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.73241	7.57632	8.17101	6.88984	18.0167	18.0902	23.9654	24.2561	8.15492	8.69374	7.52687	8.07365	6.84801	7.52846	7.15586	9.94868	7.49598	7.17718	4.1837	2.92456	4.34532	3.43401	4.95058	4.87365	15.4543	16.8639	4.72325	3.85816	2.49419	2.32887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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