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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012315 ID=TCONS_00012315|Name=TCONS_00012315|organism=Clytia hemisphaerica|type=transcript|length=1052bp
TGAAATTTTTTGAGGTGTAGACGTTTAGTTTCAAAGATATTACAGAAGGG
GACAAAATATTTCGTTCTGTGGATGTAACCAAGATTCTAGGACATTTGCA
AGGGGGATTTTGCTTCCCCCGCATACCCTCAGGACAATTTATCTTCTCTT
TGTGGGATGGCAACCGTTTTGTAGGGTCTGGGTCCAAAAaacgaccaatc
aaatcatccAGATTAGCATGGCCAGTTGATTTAACCAATTGTGAGAGGAA
CTGTCAAGATTGTGGTATTAAACATTTGAAACCATTGAGCAAATTGGGAT
TGACAACCGGCACAAAATGTATCATCAAGTACCCTGATATGAAGGTTGGA
GATCGGTATAAGATCATGTTACAGCGAGTTGAAAAGGAGATGGAAATTAA
TACGAAAGATTTTGGTGAAATGCCAAAAGCCCACAAAGATGAGTTGGATG
AATTTGATAGAGTGGTTAAAGGAAGCTTATGGAACGTCTTAGTCAACGAT
CCTCAACGATTACGAACTATCCTTGTTGGTCAAATGATATTGGAAAGTCC
ATCTCCATTCATGGATCGATTGGGTACATTCGACGAGATGCTTGGGTGTA
ATAAATGCAACGCGATCCATCATAAAGACACTAGATATGGTCCCATAGTG
GGTGCAGAAGATGGAAGTTTGAGATTCCCGAAACGTATAGATGCAGTAAC
GAAAAGTGATGAATCGAGTTGTAAAGATTATGATATTTCTGGATGGAATG
GTGATTTGAGTATCGCTTTTGAGGGAGGTCCGCTTGTTaaggatgttttt
ttttatacaaaGTATAAAATGATCTGGTAATATGTGACCAATATACTTTA
TGTTTACTTAAGACCATTATTTGACAAACCAAAGAACAAACTGAATATTT
ActcaattgaaaaaataccaagaaaTACCATCTCACTCTTTTCGTTCATC
ATTAGAATTAATTTATGGCTAGCTAATACaaatttttagaacattttgtA
TGTAATTTTACATTATTTATTTCATAAATTTACAGTACAGAAGACTGTTT
CA Run BLAST on NCBI transcript from alignment at sc0000143:509725..514609- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012315 ID=TCONS_00012315|Name=TCONS_00012315|organism=Clytia hemisphaerica|type=transcript|length=4885bp|location=Sequence derived from alignment at sc0000143:509725..514609- (Clytia hemisphaerica)
TGAAATTTTTTGAGGTGTAGACGTTTAGTTTCAAAGATATTACAGAAGGG
GACAAAATATTTCGTTCTGTGGATGTAACCAAGATTCTAGGACATTTGCA
AGGGGGATTTTGCTTCCCCCGCATACCCTCAGGTGAATATTTCCCTAGGT
ATCAGTCTCGAAAATTACGGGGAGAACTATCTCCCTCCGGATTACCCCCA
AGAAATTTAATGTTTTACGTTTCGGTGCTTTTACTGTACTTGTGGTGTTT
GAGACAAATGCTCCCCCTCTCCAGAGGAGGTTTTTCAAAGTGGCACCGAA
ATACAAAGGGTGTAAAAGATTAATCACTAATTTCGGCACTCCTCTGCTCT
TTCACTCACCTTAGGTATGGCAATATTTAGCAAAATTTTAGTGCTTGCTT
TGCTCTAGTCTAGAGATACATTGTTTATTTTAGAGATTTTCAAAAAATTT
TCTGTTCGGTCTCTAGAGTAAATGAAAATCAGGCTCCTCTTCTATTATCA
GTAAAATATACTTTATGAAAAAATGGTGTTGTTAAAACTCCAGAGCACTT
GCATGATTTAACTTATTTCTATTTCTCATTCGCAGGACAATTTATCTTCT
CTTTGTGGGATGGCAACCGTTTTGTAGGGTCTGGGTCCAAAAAACGACCA
ATCAAATCATCCAGATTAGCATGGCCAGTTGATTTAACCAATTGTGAGAG
GAACTGTCAAGATTGTGGTATTAAACATTTGAAACCATTGAGCAAATTGG
GATTGACAACCGGCACAAAATGTATCATCAAGTACCCTGATATGAAGGTT
AGTAAGAACGTTTTTTCAACGCCAATTGAATATCCTATTGAAACGTCATT
TGAATGCTGGATGGACTTTTTTTCGACGTTTTGTACAAGTTTCCAATCTA
AGATAACCATTATTGATTTTTTCCTAAGTCGTAANTGTGTTCATAATGAG
CGTATAGAGAGGGGCGCCAAAAACAAAAAATCTTTAAAAAGGGCGCCATA
TTTGCCTTGGCCACCCCAGAGACATTTTCCCACCACGCCACTACGTTAGG
TATGGCAATATTTTGCAAAATTTTAGTGCTTGCTTTGCTCTAGTCTAGAG
CTACATTTGTTTATTTTAGAGATTTTCAAAAAATTTTCTGTTCGGTCTCT
AGAGTAAATGAAAATCAGGCTCCTCTTCTATTATCAGTAAAATATACTTT
ATAAAAAAACGGTGTTGTTAAAACTCCAGAGCACTTGCATGATTTAACTT
ATTTCTATTTCTCATTCACAGGACAATTTATCTTCTCTTTATGGGATGGC
AACCGTTTTGTAGGGTCTGGGTCCAAAAAAACGACCAATCAAATCATCCA
GATTAGCATGGCCAGTTGATTTAACCAATTGTGAGAGGAACTGCCAAGAT
TGTGGTATTAAACATTTGAAACCATTGAGCAAATTGGGATTGACAACCGG
CACAAAATGTATCATCAAGTACCCTGATATGAAGGTTAGTAAGAACGTTT
TTTCAACGCCAATTGAATATCATATTGAAACGTCATTTGAATGCTGGATA
GACTTTTTTTCGACGTTTTGTGCAAGCTTTCCAATCTAAGATAACCATTA
TTGATTTTTTCCTAAGTCGTAAGAACGATGCCCTCTTTTGATGCAGGTAG
AATGAACTTTGGGTTGTTAAGCAGGCCGAATTTCAGAGATTAAGGGTTAT
TAGTGAAAAAGTAATTTTTAAGTCGTAAAATGAACTAACTTAGACCATGT
TTACACGTTACTATTTCGTTTCGCTCCGGTAGTATTTTCGTTACGGATCG
AGTGTGTTCATATTGGTTTCAGAACGTTTCGGAGCAAGAAAATGAAGCAG
TTCCGTTCCGATGAAAAAAGTGGAGCGAAACTGTTTCGATTTTTTTTGCT
TTGTAGCGTCTTCTTTTTTAACGTTTCGATTTTTACGTTCACTCTTGTTT
CGGAACCGGAACTGAATGGAACCGGAGTCTGAATATGGTCTTAGATGACC
TTGAAAACTTACTCGTATTGTTATAGGATCCGACCGTTAAACATAGCCAG
ATTCAAACCTCAGGTTAATAGAAACAAAGAAATATCCTCCTTACTTGTGA
ATTTCATAGTAATATTACCCTCATTAGGAATAGAGAGGGAAAGATTGCCC
TTGAAACACCCCCTTCTCACAGACCAAGTAGGATTTTTTTCAGCGAGGGT
GGGTAAAAATAACAGACTCTGACTCAATAGGGATTTATATTTCCATATTT
TTTGTGGCTAGGGACTTCTATTCTTTTGTTTTTAAGTCAGAAAATTCAGC
GAGGATGGGAAAAATAGTAAATATTTTGCAGCGAGGATTGCTTTATTTGA
TTATTTTCAGTGGGGACAAAAATTAAAGTATAGTGTGGGTGCGTGAGAAG
GGGGTGTCTCGAAAGCCAAAAAGACCGAAAAAATTGATTTATATTTCCCG
GTCTGAATTTTGATTGAAAGCTTAACCACTGAAGTAACAAGCTTAATTCG
AGTAACTAAGACAAGTACAGTATGTTAGAAAAGTCCATACTTGCTATGAA
CTTCTATTTCAATACTACCTACCAACTTTACCAAAAAGCTTGATAATGCC
TGATTAAGCTTGATTAAGCCTTGTTCTGAAACATAGGGATGAAATTGAAA
TTATCCAAATGGGCTTTTCCAGAAAAAACCCATACCCCATGTCGAGGAGA
TCCCTCCCTCTGTGGCTGGAAATGCTGTAACCTCCTGGAATTCCAGGTAA
TTTCAGGTTTAAACCCTTCTTGAATTCTGAGTTTTAGTAGGATTTAAAAA
GCTACCCCTATGGAATTCCACTTCTTTTTGACAGATTTTTGTATCTCACT
ATAGAATTCCGCCACATATCAAAACTTACCTCCTTAACCTGAGTATCAGA
GGTTCAGTTTTCAAAGAATATATTAACCTCTGAAGACAAATAATAGAAAT
TTTATCGCGCAAGTGTAAATCTAATCACTGTAGAAAGAATCAAAGATGAA
GAGCAAATATTACCTCATTAATGTCTAGCAGACTGTATCAGTATGCAGTT
TACTATTTACGAATTCCCCAGAAACCTCCAAGTGTAATTGAAGTGAGTTT
CTTTCGAAAGAAATCTTTTACATGATCCCCAAATGTATAACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAACAG
TAATTACTAAACTATTAATTATGGAAATGTCACTTTAATTGAATCGAAAT
AATAGACAGACTTTATGTTACGATTCTCTATCACTGACTTTTTTTAAAAA
GCATTGATGACATTTTTTAGTTGTGTTTTCAACGACGGGAATAAAAATAT
CAACTTTGAACTTCATCCAAGATCTTGGATGGTTTCCATGGTTACCTTTT
TCTTCGTTGATTGCGTGCTGAATAGAATCTTGATTCGTCGGCACAGCGTC
GATATATGATTTCGACCTGTGCTTTTTACCGTATTACCTCCTTGGAACGA
AAACGGACCTCCTCAACGGGGGTTATACGGTTTTCTTCTGGAAAAGCCCA
ATATATGTATGACTTTTGTCGATTTTCAATTAGTTAGTTAGGGGATAACC
CACCGGATATCTTTGTTACTAACGAATAACCTTGATGTAAAATCTGAATT
GATTTTTTCTAGGTTGGAGATCGGTATAAGATCATGTTACAGCGAGTTGA
AAAGGAGATGGAAATTAATACGAAAGATTTTGGTGAAATGCCAAAAGCCC
ACAAAGATGAGTTGGATGAATTTGATAGAGTGGTTAAAGGTGTGTTTAAG
GAACCTATTAACCTCTAATACTTTCAATATCCACTCATGTAAAAATTTGT
GACCGTAGCCGTAAATTGCTGCGCTGGCACCTTTTTGTCCGTGTTACCAC
CCTAAAACCACCCCAGTCTTTTTGTCGCACCTAAAGACAATAGAAAAAAG
TGAAAAACAAGGATTGGATCGAGTTTAGGGTGGTAAATTAAATAATAAAG
TGGCCGCCTGACCACGCGACTACGGTCGATAGAAATAGTACTTGAAGTGT
TTTTCTGAGTACAATCTCAAAACCTCAGTGAAACGTTTTTTCTAGAGCCG
AGGAAAATTTATAACGAAGTCCAAAAGGGGATAGAAATCCTATTGTAAAG
ACAAGCTAAAATAAGGCTACTAAGGCGGGAGTTGTTGATATATGATATTA
ATCTCAAGATCCATGTTGACTGACTAGGACTATGTTTCTAAAAATTCTAA
GAGCTGTAAAGCGAGTAAGCTTGTTTTATAAATACAATTTCATCTTGTAT
ACAGGAAGCTTATGGAACGTCTTAGTCAACGATCCTCAACGATTACGAAC
TATCCTTGTTGGTCAAATGATATTGGAAAGTCCATCTCCATTCATGGATC
GATTGGGTACATTCGACGAGATGCTTGGGTGTAATAAATGCAACGCGATC
CATCATAAAGACACTAGATATGGTCCCATAGTGGGTGCAGAAGATGGAAG
TTTGAGATTCCCGAAACGTATAGATGCAGTAACGAAAAGTGATGAATCGA
GTTGTAAAGATTATGATATTTCTGGATGGAATGGTGATTTGAGTATCGCT
TTTGAGGGAGGTCCGCTTGTTAAGGATGTTTTTTTTTATACAAAGTATAA
AATGATCTGGTAATATGTGACCAATATACTTTATGTTTACTTAAGACCAT
TATTTGACAAACCAAAGAACAAACTGAATATTTACTCAATTGAAAAAATA
CCAAGAAATACCATCTCACTCTTTTCGTTCATCATTAGAATTAATTTATG
GCTAGCTAATACAAATTTTTAGAACATTTTGTATGTAATTTTACATTATT
TATTTCATAAATTTACAGTACAGAAGACTGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012315-exon-sc0000143-1575043694:514478..514609 | TCONS_00012315-exon-sc0000143-1575043694:514478..514609 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1575043694:513813..514024 | TCONS_00012315-exon-sc0000143-1575043694:513813..514024 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1575043694:510821..510947 | TCONS_00012315-exon-sc0000143-1575043694:510821..510947 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1575043694:509725..510305 | TCONS_00012315-exon-sc0000143-1575043694:509725..510305 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1510915933:514478..514609 | TCONS_00012315-exon-sc0000143-1510915933:514478..514609 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1510915933:513813..514024 | TCONS_00012315-exon-sc0000143-1510915933:513813..514024 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1510915933:510821..510947 | TCONS_00012315-exon-sc0000143-1510915933:510821..510947 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1510915933:509725..510305 | TCONS_00012315-exon-sc0000143-1510915933:509725..510305 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1491911889:514478..514609 | TCONS_00012315-exon-sc0000143-1491911889:514478..514609 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1491911889:513813..514024 | TCONS_00012315-exon-sc0000143-1491911889:513813..514024 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1491911889:510821..510947 | TCONS_00012315-exon-sc0000143-1491911889:510821..510947 | Clytia hemisphaerica | exon |
| TCONS_00012315-exon-sc0000143-1491911889:509725..510305 | TCONS_00012315-exon-sc0000143-1491911889:509725..510305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:509725..514609 - |
Blast
The following BLAST results are available for this feature:
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