TCONS_00012302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012302
Unique NameTCONS_00012302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012302 ID=TCONS_00012302|Name=TCONS_00012302|organism=Clytia hemisphaerica|type=transcript|length=235bp
gaaNGAAGGGAAGAATACCATTGGTCCAAGGGTGATGATATGTGGTCCAG
TTGATGTCGGAAAATCGACACTCAGTCGAATTCTTCTCAACTATGCTGTC
CGAATGGGAAGGCGTCCACTTTTTGTTGACCTTGATGTCGGACAGGGTTC
AATAGCTGTACCAGGAACTATGGGTGCATTGTTGGTAGATCGACCTGCAG
ACGCTGAAGAAGGTATCGTCTCGTCACCTTGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000143:560189..562812+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012302 ID=TCONS_00012302|Name=TCONS_00012302|organism=Clytia hemisphaerica|type=transcript|length=2624bp|location=Sequence derived from alignment at sc0000143:560189..562812+ (Clytia hemisphaerica)
gaaNGAAGGGAAGAATACCATTGGTCCAAGGGTAAACATTTTGTCTTTAT
AACAGTGTGGAATTCATTCAtactttatttttataagaaccagtaaattt
ttgatgaggctCGGCTGCTCTtatttggcactttgagccacAAATTGTTC
TCATCCTGTTCCTATATAGAGGGGGGAATTGAAGTATTTCAGgatttata
cccaatttttactactttgacccctaaactgCTTGAAATTGcaagtaaaa
attgggtataaagtTACTGAGTAATTCCAGGCCCAGCTTTGCTCTTTAAT
tgttggcgattttgagcctcattgttcttataaaattattcttacaAAAG
AAGAAAGTGTAGATTGCAAACATATGATAAGAAAACGCAATCCTAACTCA
TCATAAAgagactaaaaatttgaaaaaacagcAGATGCGATCTATAGTAG
gataaaattattgaaaatttaaagtgaTGTTCGCTACACATTTTTATAAT
GACTTCTTTTGCAttgaaaccttatgttcttccCATATACTTTGTTCTTG
CAAAAAACGTATACTCATTTCtaaagtttcaattttaatgaaacaatGAT
CGTCTACTAATTGTTTAAAGGTGATGATATGTGGTCCAGTTGATGTCGGA
AAATCGACACTCAGTCGAATTCTTCTCAACTATGCTGTCCGAATGGGAAG
GCGTCCACTTTTTGTTGACCTTGATGTCGGACAGGTATGATTAAATTTAA
AAGAATTTCTCTTTTCTATAGAAGAAACTAAGTAGCCACAACAACTTTAA
ACTTGATTCACACATTTTGTAGTACAATTGACGATTACTCAGGAGCAACA
AGGAGAAAATTGTAAAATTTGTTCGAGTCTGTACTGTAGGATGACCAATC
AGATTCGTGTAATTATGTTAATATGTAATGTGTAATTGCTGACTAATTAT
TTTTTGTTTACCATTCAGGGTTCAATAGCTGTACCAGGAACTATGGGTAA
GTTTTTCTTCTTTGTGTGTTTAATCCTTCTTGTGTTCACACTAACCTAAT
ATATGATCTATTGTGGTGCATATATAAAAGTCTCGGTCTACAGTTTATTG
GGTTTGAAACTTTTTTAATTCCAAAtccttttaattgaaaaaagattaat
tACGACAcaggggggtcatgcagttggtACCAGACATCATGATGACTAAC
TGCAAAATTGTATGTTCACTTTGTATTATCATGGTAGAGGGTCATGTGTA
AATGAGGTTATGTTTcaaataccgggtgacccacgaaaaagttcggacgg
ttTTCGTTGGCTAGGGTctgaaataaaagtaatataaactcgatctaatt
ttttaaaagatagaggatgctctaacttaaactttgagctattacttttt
aaatttggttcagcggttcttcatttatgagcttttaaagtcaaaattca
attattGGAAAgtgaaaaaacacgtcaaaaatgagGTATCAAATTATAAT
TGTTTTCATTATCTTTAACATTGTGTTTTTCGAGTGTGCTGATGTGGGGC
TGATGTTTTACGACCTCGTTAATTAGTGTTGTAGGTAATTAAAGTttgga
aaataataaattaacaacgaagtagatttatataaatttattgtaaatat
ttttatcaaatatattttgcaaATAGGCAATTATATTTGCcttctttatg
aaaatgtcGCGTCTTATGAAAGAACAGAAAGTGTGGGTTTGCCTGGAATA
TGCTAGAAAGTGCATGGTGGTGGTTCTTTTCTGAACGAATAACTTGttaa
taaattttgtgaaagtaaagaatctaaaaaaagttttaaaattgaataaa
aatatctaacatGCTCTTTTCTAACGATTTAACGACCttgcttgattgat
tgataataaaacaatttgatacctcttttttgacgtaatttcgctctttc
cgaaaagtgaattttgactttaaaagctcataagtagggaACTTgtgggt
caaatttaaaaagtgatagctcaaactttaagttagaatatatctacttt
ctatatattaaaatttcaagcactttgagACATTTTTTCGGCCTCGAGAC
GCCGAAAactgtccgaactttttcgtgggtcacccggtacttATGGGAGT
GTAGTATGAAATGTGTAAGTCGTCGCTTGTTACGCTTTGTATTATAGCAC
GAAGTAGATAGGGAAAGCCATATGTCATCATTCGtgacaaatataacatt
acttGAATACGTGTATAAGTGAAGTATTTTTCGAAGTGTTTTTCAGTCCA
CCATAGATTATAAAATTGCCCCTAAAAGTACCATTTGAGCTGAAATTTAC
AGTACACCACCCCTTTACAGCAGTTAGTACCCACAAGGTACTAACCGTCA
TGATGTCTGGTATCAACTGCATTACCCCCTGTACGACATCAAAACAACAT
ACATGATCAATGAAATTGGTTTGCTGATAATTATATGAGTACCTTTCTTC
AGTCAATGTGAAAATTGCTTGATATTTTCAATTATTAATTTCCTCTTTTT
TATATTCTCCAGGTGCATTGTTGGTAGATCGACCTGCAGACGCTGAAGAA
GGTATCGTCTCGTCACCTTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006920XLOC_006920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012302-exon-sc0000143-1491911889:560189..560219TCONS_00012302-exon-sc0000143-1491911889:560189..560219Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1510915933:560189..560219TCONS_00012302-exon-sc0000143-1510915933:560189..560219Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1575043694:560189..560219TCONS_00012302-exon-sc0000143-1575043694:560189..560219Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1491911889:560809..560922TCONS_00012302-exon-sc0000143-1491911889:560809..560922Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1510915933:560809..560922TCONS_00012302-exon-sc0000143-1510915933:560809..560922Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1575043694:560809..560922TCONS_00012302-exon-sc0000143-1575043694:560809..560922Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1491911889:561157..561184TCONS_00012302-exon-sc0000143-1491911889:561157..561184Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1510915933:561157..561184TCONS_00012302-exon-sc0000143-1510915933:561157..561184Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1575043694:561157..561184TCONS_00012302-exon-sc0000143-1575043694:561157..561184Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1491911889:562751..562812TCONS_00012302-exon-sc0000143-1491911889:562751..562812Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1510915933:562751..562812TCONS_00012302-exon-sc0000143-1510915933:562751..562812Clytia hemisphaericaexon
TCONS_00012302-exon-sc0000143-1575043694:562751..562812TCONS_00012302-exon-sc0000143-1575043694:562751..562812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:560189..562812 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.311851	0	6.13312e-07	0	0	0	0	2.39402	9.29402	0	0	10.6108	2.74883	1.84799	10.1795	5.89849	10.3561	0	1.06527	0	21.2175	9.97166	2.25163	0	1.06256e-07	1.96272	2.86798	0	0.840757
Blast
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BLAST of TCONS_00012302 vs. Swiss-Prot (Human)
Match: CLP1 (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens GN=CLP1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.080e-29
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 2 
Query:    5 EGKNTIGPRVMICGPVDVGKSTLSRILLNYAVRMGRRPLFVDLDVGQGSIAVPGTMGALLVDRPADAEEGI 217
            E +   GPRVM+ GP DVGKST+ R+LLNYAVR+GRRP +V+LDVGQGS+++PGTMGAL ++RPAD EEG 
Sbjct:  108 EKEEERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGF 178
The following BLAST results are available for this feature:
BLAST of TCONS_00012302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLP11.080e-2967.61Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo... [more]
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