TCONS_00012244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012244
Unique NameTCONS_00012244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012244 ID=TCONS_00012244|Name=TCONS_00012244|organism=Clytia hemisphaerica|type=transcript|length=853bp
gaaaaaaccAAAAGATCATTGTCTCATCTGATCATCTGCAAGATACAAAA
CCTCTTACCGGATAATTGCTTCATCTGCAACAGAAGATATAAAATTGGTC
TTATGGAGCTCCCGACCCCTGAATGTGCCGTTTGTGGTCAAGGTGTACAC
AAACCATGTTGGTTAAATCTTGCTACAATTCCCACAAACAACACCAATAT
TGATGAGGACACCGACGCTGAACTCTTCAAAAGCTTGTATAACCCTCTAA
ATCTACCTGGTATGTTCTACATTTGTCATGCTTGTCAACCTAACACAATC
CCAAGTGACAGAGACGGTGAcaataaaaggaaaaagaatggaaaaaaatg
taaagattTCCATCCCAAAATGTGCTTCGACTCAATATGAAAAGGAGAAT
GTTTCGCAACATCCTGCCGTTTTGTTCATGTGAAGGGAACCAGAAGAGAA
CCCATTATGGTTAAAAACACAGTAACTCACAACAACAGCAAGCTATTggc
agaaaaaaatgatgagatCAGATCCTCTGAACCAGATCATTTTTTAGAGA
TTGTCCGTCTGATGAAGGAAGAAATCATGGAGACACTGGACAAAAAGATC
ACCTCGATCGAGAATCATTTTCATCACCTTCAGCAGACGCAAACCTCTCA
AATACCCCAGTTTCCTATGCCAACTGCACCGATGATCAGGCAAATTCATC
ACCAGTTCCAATAATCAACAACTTTGCTTTTTTTAACGTACAAGGACTGT
GCCCGCAAACTGTACCAAGCAAAGTtccttttattgaaaataacatATGT
CATAAAAGTTTACTGTTTGTTGGCCTATCAGAAACATGGCTCAACAACCA
TAA
Run BLAST on NCBI

protein sequence of TCONS_00012244-protein

>TCONS_00012244-protein ID=TCONS_00012244-protein|Name=TCONS_00012244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
EKTKRSLSHLIICKIQNLLPDNCFICNRRYKIGLMELPTPECAVCGQGVH
KPCWLNLATIPTNNTNIDEDTDAELFKSLYNPLNLPGMFYICHACQPNTI
PSDRDGDNKRKKNGKKCKDFHPKMCFDSI
Run BLAST on NCBI

transcript from alignment at sc0000141:549980..550832

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012244 ID=TCONS_00012244|Name=TCONS_00012244|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at sc0000141:549980..550832 (Clytia hemisphaerica)
TTATGGTTGTTGAGCCATGTTTCTGATAGGCCAACAAACAGTAAACTTTT
ATGACATatgttattttcaataaaaggaACTTTGCTTGGTACAGTTTGCG
GGCACAGTCCTTGTACGTTAAAAAAAGCAAAGTTGTTGATTATTGGAACT
GGTGATGAATTTGCCTGATCATCGGTGCAGTTGGCATAGGAAACTGGGGT
ATTTGAGAGGTTTGCGTCTGCTGAAGGTGATGAAAATGATTCTCGATCGA
GGTGATCTTTTTGTCCAGTGTCTCCATGATTTCTTCCTTCATCAGACGGA
CAATCTCTAAAAAATGATCTGGTTCAGAGGATCTGatctcatcatttttt
tctgccAATAGCTTGCTGTTGTTGTGAGTTACTGTGTTTTTAACCATAAT
GGGTTCTCTTCTGGTTCCCTTCACATGAACAAAACGGCAGGATGTTGCGA
AACATTCTCCTTTTCATATTGAGTCGAAGCACATTTTGGGATGGAaatct
ttacatttttttccattctttttccttttattgTCACCGTCTCTGTCACT
TGGGATTGTGTTAGGTTGACAAGCATGACAAATGTAGAACATACCAGGTA
GATTTAGAGGGTTATACAAGCTTTTGAAGAGTTCAGCGTCGGTGTCCTCA
TCAATATTGGTGTTGTTTGTGGGAATTGTAGCAAGATTTAACCAACATGG
TTTGTGTACACCTTGACCACAAACGGCACATTCAGGGGTCGGGAGCTCCA
TAAGACCAATTTTATATCTTCTGTTGCAGATGAAGCAATTATCCGGTAAG
AGGTTTTGTATCTTGCAGATGATCAGATGAGACAATGATCTTTTggtttt
ttc

Coding sequence (CDS) from alignment at sc0000141:549980..550832

>TCONS_00012244 ID=TCONS_00012244|Name=TCONS_00012244|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0000141:549980..550832 (Clytia hemisphaerica)
TCATATTGAGTCGAAGCACATTTTGGGATGGAaatctttacatttttttc
cattctttttccttttattgTCACCGTCTCTGTCACTTGGGATTGTGTTA
GGTTGACAAGCATGACAAATGTAGAACATACCAGGTAGATTTAGAGGGTT
ATACAAGCTTTTGAAGAGTTCAGCGTCGGTGTCCTCATCAATATTGGTGT
TGTTTGTGGGAATTGTAGCAAGATTTAACCAACATGGTTTGTGTACACCT
TGACCACAAACGGCACATTCAGGGGTCGGGAGCTCCATAAGACCAATTTT
ATATCTTCTGTTGCAGATGAAGCAATTATCCGGTAAGAGGTTTTGTATCT
TGCAGATGATCAGATGAGACAATGATCTTTTggttttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006897XLOC_006897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012244-exon-sc0000141-1491911889:549980..550832TCONS_00012244-exon-sc0000141-1491911889:549980..550832Clytia hemisphaericaexon
TCONS_00012244-exon-sc0000141-1510915933:549980..550832TCONS_00012244-exon-sc0000141-1510915933:549980..550832Clytia hemisphaericaexon
TCONS_00012244-exon-sc0000141-1575043694:549980..550832TCONS_00012244-exon-sc0000141-1575043694:549980..550832Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012244-proteinTCONS_00012244-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:549980..550832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731041	0.700112	1.34478	1.83689	1.42685	1.13698	1.77788	2.49962	0.836804	0.739815	1.1545	0.566803	1.35504	0.657325	0.295832	0.686585	0.430201	0.235983	0.124211	0.55806	1.05265	0.663942	0.265974	0.432866	0.957629	1.02672	0.389714	0.506704	0.450201	0.443853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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