TCONS_00012243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012243
Unique NameTCONS_00012243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012243 ID=TCONS_00012243|Name=TCONS_00012243|organism=Clytia hemisphaerica|type=transcript|length=331bp
TTTATACCATCAGCATCACCAAATATTTTCTCTTCGTATAAACGGTCTAC
CAGTTTCACCAGCCTACCATCTTCGAAATAATGCTTATTTCTTTCAATGA
TGTACAACAGATCGTTACTATTCCGTACGCGAACCACGCGATCCTCACTG
TTGAGGTACATGTTAACGTAAAAACAATACTCGTTCGTTATCAAATCGTT
AAAATATCGGTAAAACTTATAATCTTCATACATTCCCATCACGAGTGTGA
TATTTCTTATCTCCGTGCAGCTGAGCATTGAGAAATCAGTCTGCCTGTGA
GGCATGGTAATATCATTACTGCAAATACAAA
Run BLAST on NCBI

protein sequence of TCONS_00012243-protein

>TCONS_00012243-protein ID=TCONS_00012243-protein|Name=TCONS_00012243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
CICSNDITMPHRQTDFSMLSCTEIRNITLVMGMYEDYKFYRYFNDLITNE
YCFYVNMYLNSEDRVVRVRNSNDLLYIIERNKHYFEDGRLVKLVDRLYEE
KIFGDADGI
Run BLAST on NCBI

transcript from alignment at sc0000141:516966..517296

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012243 ID=TCONS_00012243|Name=TCONS_00012243|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0000141:516966..517296 (Clytia hemisphaerica)
TTTGTATTTGCAGTAATGATATTACCATGCCTCACAGGCAGACTGATTTC
TCAATGCTCAGCTGCACGGAGATAAGAAATATCACACTCGTGATGGGAAT
GTATGAAGATTATAAGTTTTACCGATATTTTAACGATTTGATAACGAACG
AGTATTGTTTTTACGTTAACATGTACCTCAACAGTGAGGATCGCGTGGTT
CGCGTACGGAATAGTAACGATCTGTTGTACATCATTGAAAGAAATAAGCA
TTATTTCGAAGATGGTAGGCTGGTGAAACTGGTAGACCGTTTATACGAAG
AGAAAATATTTGGTGATGCTGATGGTATAAA

Coding sequence (CDS) from alignment at sc0000141:516966..517296

>TCONS_00012243 ID=TCONS_00012243|Name=TCONS_00012243|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000141:516966..517296 (Clytia hemisphaerica)
TGTATTTGCAGTAATGATATTACCATGCCTCACAGGCAGACTGATTTCTC
AATGCTCAGCTGCACGGAGATAAGAAATATCACACTCGTGATGGGAATGT
ATGAAGATTATAAGTTTTACCGATATTTTAACGATTTGATAACGAACGAG
TATTGTTTTTACGTTAACATGTACCTCAACAGTGAGGATCGCGTGGTTCG
CGTACGGAATAGTAACGATCTGTTGTACATCATTGAAAGAAATAAGCATT
ATTTCGAAGATGGTAGGCTGGTGAAACTGGTAGACCGTTTATACGAAGAG
AAAATATTTGGTGATGCTGATGGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006896XLOC_006896Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012243-proteinTCONS_00012243-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012243-exon-sc0000141-1491911889:516966..517296TCONS_00012243-exon-sc0000141-1491911889:516966..517296Clytia hemisphaericaexon
TCONS_00012243-exon-sc0000141-1510915933:516966..517296TCONS_00012243-exon-sc0000141-1510915933:516966..517296Clytia hemisphaericaexon
TCONS_00012243-exon-sc0000141-1575043694:516966..517296TCONS_00012243-exon-sc0000141-1575043694:516966..517296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:516966..517296 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581587	0	0.329251	2.57697	8.83055	6.37981	8.15454	7.8503	2.94055	4.55293	3.24074	2.905	5.7154	5.42282	8.23738	9.69791	1.52808	3.72971	3.70944	4.97694	1.63124	0.822827	0.333418	0	0	0.278642	0.398735	0.425541	0	0.986518
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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