TCONS_00012237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012237
Unique NameTCONS_00012237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012237 ID=TCONS_00012237|Name=TCONS_00012237|organism=Clytia hemisphaerica|type=transcript|length=241bp
ttttcttttgaagttttttcacGATAAAAAGAATAGTCAAAGCTTGTTCA
TGTTCTTGACGTAATTTCAAATGCTTTGCCATGAATAATGCCTCTCTTAA
ATCATTTGGATGATATTGTCCCTTTAGTTTTTTGAAgagctttttcgaat
gttttgaggcTTCTTTGTAATCATTTTCACGAATGAAACAACAAATATAA
ATTATTCTGCTTCGGAATTTCACTCTCGCTAGATTACAAAT
Run BLAST on NCBI

transcript from alignment at sc0000141:386962..387202

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012237 ID=TCONS_00012237|Name=TCONS_00012237|organism=Clytia hemisphaerica|type=transcript|length=241bp|location=Sequence derived from alignment at sc0000141:386962..387202 (Clytia hemisphaerica)
ATTTGTAATCTAGCGAGAGTGAAATTCCGAAGCAGAATAATTTATATTTG
TTGTTTCATTCGTGAAAATGATTACAAAGAAgcctcaaaacattcgaaaa
agctcTTCAAAAAACTAAAGGGACAATATCATCCAAATGATTTAAGAGAG
GCATTATTCATGGCAAAGCATTTGAAATTACGTCAAGAACATGAACAAGC
TTTGACTATTCTTTTTATCgtgaaaaaacttcaaaagaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006890XLOC_006890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012237-exon-sc0000141-1491911889:386962..387202TCONS_00012237-exon-sc0000141-1491911889:386962..387202Clytia hemisphaericaexon
TCONS_00012237-exon-sc0000141-1510915933:386962..387202TCONS_00012237-exon-sc0000141-1510915933:386962..387202Clytia hemisphaericaexon
TCONS_00012237-exon-sc0000141-1575043694:386962..387202TCONS_00012237-exon-sc0000141-1575043694:386962..387202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:386962..387202 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316921	0	2.48059	0.980449	0	0	1.11939	0.00211121	0	0	0	1.17894	3.74692	0.611319	2.23055	0	2.65775	2.42153	3.57625	6.81756	10.2691	12.5223	1.01483	4.77472	0	4.81907	13.3501	18.1301	5.52088	4.77558
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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