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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012233 ID=TCONS_00012233|Name=TCONS_00012233|organism=Clytia hemisphaerica|type=transcript|length=1279bp
GGAGTTTTAAAAAAGAGAGAGGCTTGTGTGTGCGACACAGAATATTGGGG
AGTTttaaatcattcgataaaatGGAGGAGAGAAATTTAGCGCACAGCGC
AAATGATAGAAATCCTCCGAAAAAAGCTGATAgtgttgaaatgaaaaaac
tgaaagaagaacatcaaaaagaatttcaaaaactgACCTATGAATCAAAG
ATTGAAATGATGGAAGCACAAATGAAAAATGCCAACTTAACACATCAATT
GGAGCTGCTTAATTTGAAACATTCACACGGAATAGAGTCGAAACAAATTC
AAGCCAACCACGAGCTTCAAAATAAACtgaatgaaatggaaaaacagctt
gtaatgaaaaacaaggaaataGCAACTAAGGTAGATGAGACAACGTTAAA
ACTGAACGAGAAAGATAAAGAAATTGTAGACACTAAAAACCAGATGACAA
TAAAACTGAACGAGAAAGACAAGGAAATAACAGCCAAGGAAAACGAATGC
AAAATGAAACTGATGACAAAAGACCAGGAGATTCTGGGAAAAGAAAACGA
CTTCAAACTTCAAATCAAAGATATGGAACATGATCACAAACTTAAActta
aagatttggaaaatgaTCACAACCTGAAACTTGTTGCGTTGACGAAAGAA
AAAGACGCGACAATCCAAATACTTCGAAACGAGATCGAAAAGTTAAAGCA
AAAGAAGGACCAGTCAAACGATGTGATCGAACCCAAGAAAGTTGTAtctg
tcaaaaaagaaaagcctCAGAAGCATTTCACGAAAGTGGAAAAGTTAGCT
TGGGGAGCTGATACTTGCTTTGAAGGGAAAAAATGGgaagaaaatgtttt
cgaatCTTATGAAGTCTGGTACCGAGAAATCAGTTTGATTTTGACgaata
gaaaacaagaaaacGTTTTGTCTCCAATCGATGGAAAAAAGTATGTTTTT
ATCAAGAAAGAGTTTATCGAATGTCATGATTTTGATTATCTAGAAAttgg
atttaaagaaaaattagatattcgtttcaaagaaaaagattttgacaTAA
TGTTTGAAGGTCTGAGCaaagaaatgatgaaaaatggaaaattcttCATT
CTCCATCCAACAATACATGAAAAGCATTTGAAGTTTGTACCACATCATTT
TGTTAATTGGTGGTGGTGGAAAGTTGAAATACCTGAAGACTTTTACTTTG
GTGATAAAACCTCAGCaattttttatgtgaaaaattaACAATCATGACCG
ATCGTGATCTTTTAGTATTAGTAAAAAAG Run BLAST on NCBI protein sequence of TCONS_00012233-protein >TCONS_00012233-protein ID=TCONS_00012233-protein|Name=TCONS_00012233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
SFKKERGLCVRHRILGSFKSFDKMEERNLAHSANDRNPPKKADSVEMKKL
KEEHQKEFQKLTYESKIEMMEAQMKNANLTHQLELLNLKHSHGIESKQIQ
ANHELQNKLNEMEKQLVMKNKEIATKVDETTLKLNEKDKEIVDTKNQMTI
KLNEKDKEITAKENECKMKLMTKDQEILGKENDFKLQIKDMEHDHKLKLK
DLENDHNLKLVALTKEKDATIQILRNEIEKLKQKKDQSNDVIEPKKVVSV
KKEKPQKHFTKVEKLAWGADTCFEGKKWEENVFESYEVWYREISLILTNR
KQENVLSPIDGKKYVFIKKEFIECHDFDYLEIGFKEKLDIRFKEKDFDIM
FEGLSKEMMKNGKFFILHPTIHEKHLKFVPHHFVNWWWWKVEIPEDFYFG
DKTSAIFYVKN Run BLAST on NCBI transcript from alignment at sc0000141:331763..333041 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012233 ID=TCONS_00012233|Name=TCONS_00012233|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at sc0000141:331763..333041 (Clytia hemisphaerica)
CTTTTTTACTAATACTAAAAGATCACGATCGGTCATGATTGTtaattttt
cacataaaaaattGCTGAGGTTTTATCACCAAAGTAAAAGTCTTCAGGTA
TTTCAACTTTCCACCACCACCAATTAACAAAATGATGTGGTACAAACTTC
AAATGCTTTTCATGTATTGTTGGATGGAGAATGaagaattttccattttt
catcatttctttGCTCAGACCTTCAAACATTAtgtcaaaatctttttctt
tgaaacgaatatctaatttttctttaaatccaaTTTCTAGATAATCAAAA
TCATGACATTCGATAAACTCTTTCTTGATAAAAACATACTTTTTTCCATC
GATTGGAGACAAAACgttttcttgttttctattcGTCAAAATCAAACTGA
TTTCTCGGTACCAGACTTCATAAGattcgaaaacattttcttcCCATTTT
TTCCCTTCAAAGCAAGTATCAGCTCCCCAAGCTAACTTTTCCACTTTCGT
GAAATGCTTCTGaggcttttcttttttgacagaTACAACTTTCTTGGGTT
CGATCACATCGTTTGACTGGTCCTTCTTTTGCTTTAACTTTTCGATCTCG
TTTCGAAGTATTTGGATTGTCGCGTCTTTTTCTTTCGTCAACGCAACAAG
TTTCAGGTTGTGAtcattttccaaatctttaagTTTAAGTTTGTGATCAT
GTTCCATATCTTTGATTTGAAGTTTGAAGTCGTTTTCTTTTCCCAGAATC
TCCTGGTCTTTTGTCATCAGTTTCATTTTGCATTCGTTTTCCTTGGCTGT
TATTTCCTTGTCTTTCTCGTTCAGTTTTATTGTCATCTGGTTTTTAGTGT
CTACAATTTCTTTATCTTTCTCGTTCAGTTTTAACGTTGTCTCATCTACC
TTAGTTGCtatttccttgtttttcattacaagctgtttttccatttcatt
caGTTTATTTTGAAGCTCGTGGTTGGCTTGAATTTGTTTCGACTCTATTC
CGTGTGAATGTTTCAAATTAAGCAGCTCCAATTGATGTGTTAAGTTGGCA
TTTTTCATTTGTGCTTCCATCATTTCAATCTTTGATTCATAGGTcagttt
ttgaaattctttttgatgttcttctttcagttttttcatttcaacacTAT
CAGCTTTTTTCGGAGGATTTCTATCATTTGCGCTGTGCGCTAAATTTCTC
TCCTCCattttatcgaatgatttaaAACTCCCCAATATTCTGTGTCGCAC
ACACAAGCCTCTCTCTTTTTTAAAACTCC Coding sequence (CDS) from alignment at sc0000141:331763..333041 >TCONS_00012233 ID=TCONS_00012233|Name=TCONS_00012233|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000141:331763..333041 (Clytia hemisphaerica)
TtaatttttcacataaaaaattGCTGAGGTTTTATCACCAAAGTAAAAGT
CTTCAGGTATTTCAACTTTCCACCACCACCAATTAACAAAATGATGTGGT
ACAAACTTCAAATGCTTTTCATGTATTGTTGGATGGAGAATGaagaattt
tccatttttcatcatttctttGCTCAGACCTTCAAACATTAtgtcaaaat
ctttttctttgaaacgaatatctaatttttctttaaatccaaTTTCTAGA
TAATCAAAATCATGACATTCGATAAACTCTTTCTTGATAAAAACATACTT
TTTTCCATCGATTGGAGACAAAACgttttcttgttttctattcGTCAAAA
TCAAACTGATTTCTCGGTACCAGACTTCATAAGattcgaaaacattttct
tcCCATTTTTTCCCTTCAAAGCAAGTATCAGCTCCCCAAGCTAACTTTTC
CACTTTCGTGAAATGCTTCTGaggcttttcttttttgacagaTACAACTT
TCTTGGGTTCGATCACATCGTTTGACTGGTCCTTCTTTTGCTTTAACTTT
TCGATCTCGTTTCGAAGTATTTGGATTGTCGCGTCTTTTTCTTTCGTCAA
CGCAACAAGTTTCAGGTTGTGAtcattttccaaatctttaagTTTAAGTT
TGTGATCATGTTCCATATCTTTGATTTGAAGTTTGAAGTCGTTTTCTTTT
CCCAGAATCTCCTGGTCTTTTGTCATCAGTTTCATTTTGCATTCGTTTTC
CTTGGCTGTTATTTCCTTGTCTTTCTCGTTCAGTTTTATTGTCATCTGGT
TTTTAGTGTCTACAATTTCTTTATCTTTCTCGTTCAGTTTTAACGTTGTC
TCATCTACCTTAGTTGCtatttccttgtttttcattacaagctgtttttc
catttcattcaGTTTATTTTGAAGCTCGTGGTTGGCTTGAATTTGTTTCG
ACTCTATTCCGTGTGAATGTTTCAAATTAAGCAGCTCCAATTGATGTGTT
AAGTTGGCATTTTTCATTTGTGCTTCCATCATTTCAATCTTTGATTCATA
GGTcagtttttgaaattctttttgatgttcttctttcagttttttcattt
caacacTATCAGCTTTTTTCGGAGGATTTCTATCATTTGCGCTGTGCGCT
AAATTTCTCTCCTCCattttatcgaatgatttaaAACTCCCCAATATTCT
GTGTCGCACACACAAGCCTCTCTCTTTTTTAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012233-exon-sc0000141-1491911889:331763..333041 | TCONS_00012233-exon-sc0000141-1491911889:331763..333041 | Clytia hemisphaerica | exon |
| TCONS_00012233-exon-sc0000141-1510915933:331763..333041 | TCONS_00012233-exon-sc0000141-1510915933:331763..333041 | Clytia hemisphaerica | exon |
| TCONS_00012233-exon-sc0000141-1575043694:331763..333041 | TCONS_00012233-exon-sc0000141-1575043694:331763..333041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:331763..333041 . |
Blast
The following BLAST results are available for this feature:
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