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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012192 ID=TCONS_00012192|Name=TCONS_00012192|organism=Clytia hemisphaerica|type=transcript|length=1552bp
ATAAAATTACAGTAAagacagttttgaaaaaaaacaaaacgaaaagctaa
aaacagttaaaaataaATACCTAGAGACCATTATGTATGAGCTGTAAAAT
CGTAACAATGGCATAATATGGGACTAAAGGTGCAAATGACTGATTAATAA
AAAGACTACGTCGTGAAAAGTTGTATTGTTTTAAATAGCTTTTGTATATT
TAATGTATTGTTTTTTTGCTAATAGTCGAAAACTTGTAACTTGAatatct
cgattttggaaaTTGCTTAGGCAAAAAGATCTGAAGGTTTAGCTCAGGGA
CATAGAAGGAATCTGTAGGGTAAATCTGATTATTTTATTCTGGTTATAGA
ATTCTTAATTTACGATCTTCTTAGATTCAAATTTCAAACGCgtaaaattt
gaccaaaatagCCACCCAGCATTTATTTTAGGTATCCCCAAAACAATAGC
GTCGTTATTATCATCATAAAACTCCAGATTAACGTTTTTAACTTGCCAAC
GTTCATAATCATGGCCATTAAAATTGCGGTTGAATTTTAGGTGTTTAGTA
TCAATTTTCGGGTGGAGTAGAAAAAGATCAACACCATCATTTGTATACAG
TTCCTTAGTTAAACCTTCAGTATTGAACTCGTCACTACAGTCTACataag
cgctatattttcttttCGACACAAAATGCAAAACTTTATGAtgtttatca
aacttttttctaaTGAACAAGAATTCGGTTGCGACATACAACTTTTTATT
CTCCATTAACAATGAAATCCTTTCGTACCACTTCTCGTATGATTCGTACA
GCTTTGGACCATGTGAAATCCCTTGGATGAAATAATTGGCACCCCATACC
ATACGATCAATGTCGGTTAATGCTTTCACAGGAGTATCCAGCCGGGCACT
TTCTTTTTTGACTGCCTGCTCATTAACAGTTTTCATTTCAGCTCTCATTT
TCTGTATggtttcttcattttctttcattACTTTCTCCATCTCGGCTATT
TTTACCTCCTTTTGTAACATTTTAATTTTGTGTTCGTTTTCcaaatcttt
cATTTTAATTTTGTGTTCGTTTTCcaaatctttcattttcattttccatt
cattttctTGTTCTTTCTTGTACAAAACCATTTCGTGCTCTTTGGCTACT
AATTGTTTCTCCTTTTCAACTAACTTATTTTGGAGCTCGTCTTTCTGTTT
TTGGAGTTGTTGATCAGCTTGAACTTGACTTGATTGAGATTCATAAGAAT
TCTTTAGTATGAACATCTCAAATTGATGAGATaaagtttgattttctttt
tctagctGCGTGATTTTCATTTGTGATTCCATCATCTCTATCTTTGATTC
ATAGGTcagtttttgaatttctttttgatgttcttctttcAGTTTGACAA
TCTCTCCACTATCCATTTCCACCATTGGATTTCTACCGACAGCACTGTGA
GCTAAATTTCTTTTATCTTCAGGATTCATTTTTTCTTAAACAGCATCAAC
AAACATAAAGAGACACAGACACAAACAAGGACGAATAAAAACTCAATGCA
TC Run BLAST on NCBI transcript from alignment at sc0000141:101894..103741- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012192 ID=TCONS_00012192|Name=TCONS_00012192|organism=Clytia hemisphaerica|type=transcript|length=1848bp|location=Sequence derived from alignment at sc0000141:101894..103741- (Clytia hemisphaerica)
ATAAAATTACAGTAAAGACAGTTTTGAAAAAAAACAAAACGAAAAGCTAA
AAACAGTTAAAAATAAATACCTAGAGACCATTATGTATGAGCTGTAAAAT
CGTAACAATGGCATAATATGGGACTAAAGGTGCAAATGACTGATTAATAA
AAAGACTACGTCGTGAAAAGTTGTATTGTTTTAAATAGCTTTTGTATATT
TAATGTATTGTTTTTTTGCTAATAGTCGAAAACTTGTAACTTGAATATCT
CGATTTTGGAAATTGCTTAGGCAAAAAGATCTGAAGGTTTAGCTCAGGGA
CATAGAAGGAATCTGTAGGGTAAATCTGATTATTTTATTCTGGTTATAGA
ATTCTTAATTTACGATCTTCTTAGATTCAAATTTCAAACGCGTAAAATTT
GACCAAAATAGCCACCCAGCATTTATTTTAGGTATCCCCAAAACAATAGC
GTCGTTATTATCATCATAAAACTCCAGATTAACGTTTTTAACTTGCCAAC
GTTCATAATCATGGCCATTAAAATTGCGGTTGAATTTTAGGTGTTTAGTA
TCAATTTTCGGGTGGAGTAGAAAAAGATCAACACCATCATTTGTATACAG
TTCCTTAGTTAAACCTTCAGTATTGAACTCGTCACTACAGTCTACATAAG
CGCTATATTTTCTTTTCGACACAAAATGCAAAACTTTATGATGTTTATCA
AACTTTTTTCTAATGAACAAGAATTCGGTTGCGACATACAACTTTTTATT
CTCCATTAACAATGAAATCCTTTCGTACCACTTCTCGTATGATTCGTACA
GCTTTGGACCATGTGAAATCCCTTGGATGAAATAATTGGCACCCCATACC
ATACGATCAATGTCGGTTAATGCTTTCACAGGAGTATCCAGCCGGGCACT
TTCTTTTTTGACTGCCTGCTCATTAACAGTTTTCATTTCAGCTCTCATTT
TCTGTATGGTTTCTTCATTTTCTTTCATTACTTTCTCCATCTCGGCTATT
TTTACCTCCTTTTGTAACATTTTAATTTTGTGTTCGTTTTCCAAATCTTT
CATTTTCATTTTCCATTCATTTTCTTGTTCTTTCTTGTACAAAACCATTT
CGTGCTCTTTGGCTACTAATTGTTTCTCCTTTTCAACTAACTTATTTTGG
AGCTCGTCTTTCTGTTTTTGGAGTTGTTGATCAGCTTGAACTTGACTTGA
TTGAGANCAGGAGTATCCAGCCGGGCACTTTCTTTTTTGACTGCCTGCTC
ATTAACAGTTTTCATTTCAGCTCTCATTTTCTGTATGGTTTCTTCATTTT
CTTTCATTACTTTCTCCATCTCGGCTATTTTTACCTCCTTTTGTAACATT
TTAATTTTGTGTTCGTTTTCCAAATCTTTCATTTTCATTTTCCATTCATT
TTCTTGTTCTTTCTTGTACAAAACCATTTCGTGCTCTTTGGCTACTAATT
GTTTCTCCTTTTCAACTAACTTATTTTGGAGCTCGTCTTTCTGTTTTTGG
AGTTGTTGATCAGCTTGAACTTGACTTGATTGAGATTCATAAGAATTCTT
TAGTATGAACATCTCAAATTGATGAGATAAAGTTTGATTTTCTTTTTCTA
GCTGCGTGATTTTCATTTGTGATTCCATCATCTCTATCTTTGATTCATAG
GTCAGTTTTTGAATTTCTTTTTGATGTTCTTCTTTCAGTTTGACAATCTC
TCCACTATCCATTTCCACCATTGGATTTCTACCGACAGCACTGTGAGCTA
AATTTCTTTTATCTTCAGGATTCATTTTTTCTTAAACAGCATCAACAAAC
ATAAAGAGACACAGACACAAACAAGGACGAATAAAAACTCAATGCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012192-exon-sc0000141-1575043694:102691..103741 | TCONS_00012192-exon-sc0000141-1575043694:102691..103741 | Clytia hemisphaerica | exon |
| TCONS_00012192-exon-sc0000141-1575043694:101894..102394 | TCONS_00012192-exon-sc0000141-1575043694:101894..102394 | Clytia hemisphaerica | exon |
| TCONS_00012192-exon-sc0000141-1510915933:102691..103741 | TCONS_00012192-exon-sc0000141-1510915933:102691..103741 | Clytia hemisphaerica | exon |
| TCONS_00012192-exon-sc0000141-1510915933:101894..102394 | TCONS_00012192-exon-sc0000141-1510915933:101894..102394 | Clytia hemisphaerica | exon |
| TCONS_00012192-exon-sc0000141-1491911889:102691..103741 | TCONS_00012192-exon-sc0000141-1491911889:102691..103741 | Clytia hemisphaerica | exon |
| TCONS_00012192-exon-sc0000141-1491911889:101894..102394 | TCONS_00012192-exon-sc0000141-1491911889:101894..102394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:101894..103741 - |
Blast
The following BLAST results are available for this feature:
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