TCONS_00012178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012178
Unique NameTCONS_00012178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012178 ID=TCONS_00012178|Name=TCONS_00012178|organism=Clytia hemisphaerica|type=transcript|length=678bp
TTCTGGGGATTGGAGAACTAGAATGGAAAGAATAGCAGAACTTTACGAAT
TTATAGATATAATTGGAGGTGGAAAACAGAGTTCAAAGACTAAACGCAAA
aaATCGTATTCGACAAACACACTGACACGAGCTGATTCTaccgaagaaga
aaatgaatgcAAAACTTATGAAGGTATCACATTATGCGTGTATCGTCTGG
AACCAGAAATCACGAAAGAACAGTTGAAAGAAGTCTTCTCTAAATTCGGA
CACGTTTTAAAATGTACCGTAACAGAAGAATGTTCCGGACCTCTACCCTA
CCGCATCGGAAGCATCGCGTATTATTCCCCACTAGAAGCACAACAAGCTA
TTCGATATATGAACGGTAAAGCTATCATTCAAAACAACATTTATGTTGGT
TTACAGACACGGAAAAAAGAGAGGCGACGATCATCAAGAACTAGCCCGCC
ACCTTCGGCATTGCTTCTCCCGCCCCCGAAAGAGGGCGCTGAAATTGAAA
ATCGGACTGAAAGATCTTTTAGTGAATCAGTAACGACAAGTGGTAGTGGT
GGTCAGAGTGTGGGTGAAAAATTGATTCAATTTAAAAGACTTTGTCGCAC
GAGGTCGTTGAACACCAGTGCTTTGGATACTCACTcttaattcaaatatt
ttttaaacatacaGTGTGTCATGAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000141:8554..13023-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012178 ID=TCONS_00012178|Name=TCONS_00012178|organism=Clytia hemisphaerica|type=transcript|length=4470bp|location=Sequence derived from alignment at sc0000141:8554..13023- (Clytia hemisphaerica)
TTCTGGGGATTGGAGAACTAGAATGGAAAGAATAGCAGAACTTTACGAAT
TTATAGATATAATTGGAGGTGGAAAACAGAGTTCAAAGACTAAACGCAAA
GCAAGTTTGTTAATAAAGTCAAGTCCATCCATAACTTGAACGCGCACGTT
GGGGGTCCTTCAAAGTTCCTCAGAGTGCCGTCAAAAACCGGCAAAAATTG
CCAGAAATGACCTCCTCAATTGGGAACACAAACTTGTTTGAATTAAGGAA
ATTTTGAGTTATGGAGTAGGCTCACAAGGCATTTTTAAGAAAAATTATTC
GAGTTATCGAGCCATTCGAATTAACTGGTTAATTAATTGGTTTTGCAACA
AAAGGCGCGTCATAACAGAGGCTCGAATAATGGAGACTCCACTGTAACAG
AAATCTAAAATCTTACAAAACTTACTACATTATTTTTTGAATTTTGTATG
TATTTAGGTGACCCAACCCTTTTTGTTTTTTAAACAGTTTAGACAGAGGC
TTGCTGTTAAAACTGACATAACATGCATAATTAACTGAAGTCTGATAAAA
GTTCCTTAAAAAGTAGGCCTAAAACGGCCAAAAGTGACTAAAAACAATGC
TGTAATTTTTTATCGAACTATACGAAAAATCTGAACACAGATTTGAAATC
AGCAAGGTTCACAGTAGAAAAAATCTTCATTTTTTAAAAACTTCTATCTA
TTCGGTTATTCTTCTTGGTAATATCTTTCCAACGGTGTATAGCTTTTTTG
TACGTATAGAATGAATACCTACTGCAAAATTGTTAAAAAGTAAAATGTCC
ACATACTTTTGAGACAGGCTTAGACGATGCTATCGTCCCTTTAAAGGTCA
GTAAACGCGGGAAAAAGTTCGGGCGTCAGGGCGGTTTACGGGAAAAAAGT
GGCGGTAGAGTTTTGGAACACTGTAAACATCTCCGCCACTGCTTACTCCA
CCCAAATTTATCACGCCTCTCCTAAACTATTCCCTTTTTTAGTGATCGAT
AGGATCGTCTAAGACAGACTTTAATTGAATCTTTCAATCTTCATTTTCTT
CAGAAATCGTATTCGACAAACACACTGACACGAGCTGATTCTACCGAAGA
AGAAAATGAATGCAAAACTTATGAAGGTTGGTTGTTTTCAGAGGATATAC
ACGTTTTTTTTGAATTAGAATAAATTGTATAAGAACATAAGGCTCGATGG
TCAAAATAATTGGAACAAAACAAGATCATTCTAACCCTTCGAGCTTCTTC
CTATTTTTTTACTAGGGGAAGCATATTGCCCCCCCCCCCTTAAAATCTGA
AGAACGACAAGTGCTATGAACTTGAAATTTTGACCAGTGGTAGATATGGA
TTATTGGAGCTTTTTTAACCAGGCATCGAGAATAGTTCGCCATTTGGCTA
TTAAATTCAAAATTTAATGAATCTGCGATCATGTCAGATTTTTATAAGAA
CAAACTGTTAGAAATGAAATGCTCAGAAATGCTCAGAACTAGCTAAGAAC
ATTTTGAGGCTTAGCGCATTTTTAAACACCCAAGTTCTTTAATAGGCCCA
GAAATACTCACAACATGGTGAACATAAGAACATTTTAAGAACATTTTAAG
CTTAAAGTTTAAAAGTTACGAACATTCGAAGGCTACAAAAATTTTGGACG
TTCTTATAGAAAAAAATTATTTACAAGTTTCAAAAAGGGATCCTAACAAG
TCAAGGCAAGTCCTTCGACTTAAATTTTACTAGAGTCAGTCCCACCATTT
GTGCGAGTTTAGAAACTGATACAAATTGTCATACCGCGAACACCTTATTT
TAGCTCCCTCTGAAATTTAACCTGTGGCGACCTACTATTAGAATTTTATC
GCGCATGTCTCAATTATATTGCTTTTTAGCCTCGATTTCCAGACCATTAT
TCTTATTACGCAAAATAGGGGCAATGTCTGCCATAAAAAAAACCGCGCGA
GAGAGTGTTTTGAATATTTTTTCCTCTTTTGAAGAGCCCACTTCTTTTTT
GCAGTACGGTGTACCTTTTAGTGTTTGATAATTAGGTGAAGCTGATTATT
GACCTGGAATTATAAATTATTAGTCTAGATCTAGACTAATTACTATTCAA
AAATTCGAAGGTGGAGAGTATATCCATGTTAAGCTTGAACGACTTCCGGG
GGGGGGGGACTAGGTTTGCAATGTCCGAGTCAAAATTTGAAAATCGACCC
ATAGAGAGACAGAATTTTTCCACAAAATTTCAGCCAAAATTTTTAAATTG
TAGACCAATTTTCAAGAACTTATGACCCTTTGAGGGAGTCGATTTTTGAT
CAGAGACTGAATTGCTTTTTAATGATTTTCGTACCCCTTTGAGTGTGTGA
AAAAGGGACCCTTATTTCCCGGAACGACTTAAACAGACTATATGTAATTA
CATATTTCCAGTTTTAAAATTCTTCTGGGACTTATATCAGTGAAATGAAA
TCTCCTTTCTATCAGCCAAAATTTACGTGACAATGATTACCAATTCATTA
TCAAATTATCAATTCCCCGAAGTTACTTTAATATCGATTCCTAATTATGT
TTTGAGCTAGTTGTCTTTCATTGAATCTTTTCTACGTTTCTAACTCGTGA
TTTGATTGGTAAGGCTTCATTCAAGATTCTGGCTAATTGCCATGACTACT
AAGAACATCTTTTTGAGTTTTTAGCCTAAAAATGTTCTTATCGTGTTCTT
ATTTTCACCATTTTGTAAGAATTTTTGTCCCACTTCCTAAGAAATTGGGT
TATTTAGAGTACGTAAAGCCTTGTGGTCAATATTTCGGTCATCGAATCCT
TATGTTCTTATATAGTTTGATCTTATAGATAAAACGTGTAGAATAGAATC
CTTATTTGTCGTCACAGTGTAATATTCATACACTGTGACACTCCTCACTA
GTAGCCTGGTAGACAAAAACCGCTTTTTTATCGTGATTTAAAACAAAGAA
AAATTTGGTTTGTGGGAAGGCACTGGCTAACTCACTAGTGAATCTACTTT
TACGTAAAGTTTTTTTACAACCGTCTTTTCCTTGGCAAGATCCCGTAAAA
CTTGACCTGCTACAATCATATGTGTGTTCTTGTACAGAAATTCGATATTC
TGATGGAAACTCCTTGAAAAAACACTCTAGAAATCAAACAAACTTACCAA
TATCAGAATCACAAGAGGTCTAGATCAATAATGTCATTTTTTGGCCGAAG
GGCCAACAAAAAAAAGCTCATTACAATTTTCAGACAGAGAGGTTGAACAA
GAATTTGTCATAATCATAGTTTTGGAGTTGAAGTTTGTGTTTGGTAATAT
CGGATTTCCGGATTTTTCTTTTTTTCTTAGAATCGTTTTTTGTGGTTCGA
GAATTTTTATACCTCGTGATAATCGTATCACTTGCCAAAATTTCTTATTA
ACCTAGGGTGTATTCACTTGAAGTTTGCTTAAAATACAATCACGTGATCG
TGCAAACTTAGACAATAAGAGACAAAGGTGAAGTTTGTGCAATTCTTTGT
TCCCATATTTTCAAAACTTCAAGCAACAGTGTACACCCCTATTTCAGAAG
GTGTTATTTTCGATTTTTCGATTTTCTCCTGTGTTGCTGTTGTTTTTGTT
GAGAAATGAAATTATTTTTTTCAAAAAAACGTAAGCGTGTAGCCCATCTT
TTTTCAGCCGCAATTTATATGAATAGTTTTAGGCTATTCAGCGTTATACA
TTAATCCTATTAATCCTGTTAACCTAAGCCGTCAGTGGAAAAACACCCAT
AGGATTCGTGTATCTGTTACATGCTATTTTCTATTCAATTTAAAGGGGAA
ATTGCATGATGTGTGCAGATTTCCCTTCGAAAAAAACATTGAAAAAAATT
GATTTCCATTATTTAAATGATTTTGGGATTCATGAACTCTTCTCTATTGC
TAACGTAGAAAAATATCATGTTGAAATAGGCTAATATTGAAAATGGACTT
TTTCTCCCCTCATAGGTATCACATTATGCGTGTATCGTCTGGAACCAGAA
ATCACGAAAGAACAGTTGAAAGAAGTCTTCTCTAAATTCGGACACGTTTT
AAAATGTACCGTAACAGAAGAATGTTCCGGACCTCTACCCTACCGCATCG
GAAGCATCGCGTATTATTCCCCACTAGAAGCACAACAAGCTATTCGATAT
ATGAACGGTAAAGCTATCATTCAAAACAACATTTATGTTGGTTTACAGAC
ACGGAAAAAAGAGAGGCGACGATCATCAAGAACTAGCCCGCCACCTTCGG
CATTGCTTCTCCCGCCCCCGAAAGAGGGCGCTGAAATTGAAAATCGGACT
GAAAGATCTTTTAGTGAATCAGTAACGACAAGTGGTAGTGGTGGTCAGAG
TGTGGGTGAAAAATTGATTCAATTTAAAAGACTTTGTCGCACGAGGTCGT
TGAACACCAGTGCTTTGGATACTCACTCTTAATTCAAATATTTTTTAAAC
ATACAGTGTGTCATGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006856XLOC_006856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012178-exon-sc0000141-1575043694:12924..13023TCONS_00012178-exon-sc0000141-1575043694:12924..13023Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1575043694:11898..11970TCONS_00012178-exon-sc0000141-1575043694:11898..11970Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1575043694:8554..9058TCONS_00012178-exon-sc0000141-1575043694:8554..9058Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1510915933:12924..13023TCONS_00012178-exon-sc0000141-1510915933:12924..13023Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1510915933:11898..11970TCONS_00012178-exon-sc0000141-1510915933:11898..11970Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1510915933:8554..9058TCONS_00012178-exon-sc0000141-1510915933:8554..9058Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1491911889:12924..13023TCONS_00012178-exon-sc0000141-1491911889:12924..13023Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1491911889:11898..11970TCONS_00012178-exon-sc0000141-1491911889:11898..11970Clytia hemisphaericaexon
TCONS_00012178-exon-sc0000141-1491911889:8554..9058TCONS_00012178-exon-sc0000141-1491911889:8554..9058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:8554..13023 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.249527	0.064374	0	0	0.154786	0	0.536108	0	0	0	0	0	5.80254	4.42458	0	0.639843	0	3.44757	17.2375	18.2557	0	0.549837	0	0	10.6755	5.82448	0	0	0.188821	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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