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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012146 ID=TCONS_00012146|Name=TCONS_00012146|organism=Clytia hemisphaerica|type=transcript|length=1652bp
gTTCGTGTTTGTTTGAACAAATACTTACTATACAAAAATCTCTACatggt
taaaatattaaaagagaAATTACTCGAAAATGATTCCTTACAAACTGTGT
CCTGTTGAAAAATTGTTCACAACATCGTTTTATCTCATATTATTCGTCTG
TAACCTACACAGTACCTTTACCAAAAGTTTCTTCCAGTTTTTTCACTTTC
CGTATTGATTTACTATTGTCTTAAATCTTGTAGATCACAACTTCTTTTCT
ATTACGTAATTCCATATACCTTGTTTAGTCCTTTTTCGCGATAAAACGTA
AAGTAAAGCTTTCTTAGCGGTTGACTGTTTTTACAATACTGTAAGTCATA
TCACTTCATCTTACACCTTTTCAATATGTGGCTACCAACCAACGGGTTTT
ATCCATTTCCTGGATAGTCCATCTTCTTGTCTAAGTGATTTaccatcaat
caatcaatcaatcaatcaatcaatcaatcaatatcaatcaatatcaatca
atcaatcgatcAATCAATACCATCAATCAAGCAATCAATAATCAATCAAT
TTATCTCACATTAAATcgtcttcttcatcttcattttcaacctTCTTCAA
CTTCTTCTTGTTttcctttcattttttcattcaaatacaTTCTTAAACCG
TCTCTCTCATGTGCGCCGACTTCGCATACGGCATTTCGCCGACCCTTCCG
TCGTGACGCATTAAACACCATTCGTGTCGCTTCGTCAATTCCCGGTGGCA
TCAATGCTTTTTGTAATATACTCGCCATGCTGAATTCGTCATTTCGCGAT
CCTTTACGGCGGAAAGATAACTTGCGATCAGGTTTTGATGTTAAGAAAGC
ACTTTCGAAAGGGACTGAACCGCTACGTTTGTGAGTGCCAATTTTAGCCG
GCGATCTCATTCCCGACTTTTTACGTAACGACAACCGTCGCATTAACGAG
GGTGTTTTCGCTTGTCTTCGGTCTAAATTAGAAGTACTTGAACTTCTCGT
TTCCAATTCGTTTTCCGGGCATTCTTCCAACTTCCCTAAGGAAATCATTG
AGCTTTTTAACGGTGATAATTGAGCTAGTGAGTTCAGTTTCATGTCTACC
ATTGAGGTATACCCTGGCAGTGAACATCTCGAGTCTTTACGATTCAAAGA
CATCAATGATAATCGTGACTGCAATAAATCGCCGAAGTCTTTATGTGAAC
CATTCATCGTATGTGTCGACATCTTTTTTCCGACGTCTTCGATAAGGACG
TCGCCGTTATTATTGTTCCCGTCATGCCGTCTGTTTTGTTGACGTTGAGA
TGACGCCTGAACTACACTACCGTAAGAACAGTTTCGGCCACAGAATTGTT
TTCCGGCGTCGATGAGCCGGGATCGTTCttgtttctttttatctttGCTG
ACCATTGTAGTGAAAGGAAGAGAGATTTTTCGGTAATGTTTTTTAACTTC
ACTATAAATGAGAAAACAAGATTTCATCTAGAATAGGTTTTAAAGGAGCA
AATATACTAACTCTAAAGGTGCCTAGCCTCCTTCTAAAAACCCTAGATTA
TACCGCCAGGAGGTAGGAGATTTCAAGATTTCAATTTGTGTACAATGGAA
CCTTGAAACCAACCCGTTCTTTTCGTGTACCATGTTGAAGAAAGTTTTAC
AC Run BLAST on NCBI protein sequence of TCONS_00012146-protein >TCONS_00012146-protein ID=TCONS_00012146-protein|Name=TCONS_00012146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MKSCFLIYSEVKKHYRKISLPFTTMVSKDKKKQERSRLIDAGKQFCGRNC
SYGSVVQASSQRQQNRRHDGNNNNGDVLIEDVGKKMSTHTMNGSHKDFGD
LLQSRLSLMSLNRKDSRCSLPGYTSMVDMKLNSLAQLSPLKSSMISLGKL
EECPENELETRSSSTSNLDRRQAKTPSLMRRLSLRKKSGMRSPAKIGTHK
RSGSVPFESAFLTSKPDRKLSFRRKGSRNDEFSMASILQKALMPPGIDEA
TRMVFNASRRKGRRNAVCEVGAHERDGLRMYLNEKMKGKQEEVEEG Run BLAST on NCBI transcript from alignment at sc0000137:246173..247824 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012146 ID=TCONS_00012146|Name=TCONS_00012146|organism=Clytia hemisphaerica|type=transcript|length=1652bp|location=Sequence derived from alignment at sc0000137:246173..247824 (Clytia hemisphaerica)
GTGTAAAACTTTCTTCAACATGGTACACGAAAAGAACGGGTTGGTTTCAA
GGTTCCATTGTACACAAATTGAAATCTTGAAATCTCCTACCTCCTGGCGG
TATAATCTAGGGTTTTTAGAAGGAGGCTAGGCACCTTTAGAGTTAGTATA
TTTGCTCCTTTAAAACCTATTCTAGATGAAATCTTGTTTTCTCATTTATA
GTGAAGTTAAAAAACATTACCGAAAAATCTCTCTTCCTTTCACTACAATG
GTCAGCaaagataaaaagaaacaaGAACGATCCCGGCTCATCGACGCCGG
AAAACAATTCTGTGGCCGAAACTGTTCTTACGGTAGTGTAGTTCAGGCGT
CATCTCAACGTCAACAAAACAGACGGCATGACGGGAACAATAATAACGGC
GACGTCCTTATCGAAGACGTCGGAAAAAAGATGTCGACACATACGATGAA
TGGTTCACATAAAGACTTCGGCGATTTATTGCAGTCACGATTATCATTGA
TGTCTTTGAATCGTAAAGACTCGAGATGTTCACTGCCAGGGTATACCTCA
ATGGTAGACATGAAACTGAACTCACTAGCTCAATTATCACCGTTAAAAAG
CTCAATGATTTCCTTAGGGAAGTTGGAAGAATGCCCGGAAAACGAATTGG
AAACGAGAAGTTCAAGTACTTCTAATTTAGACCGAAGACAAGCGAAAACA
CCCTCGTTAATGCGACGGTTGTCGTTACGTAAAAAGTCGGGAATGAGATC
GCCGGCTAAAATTGGCACTCACAAACGTAGCGGTTCAGTCCCTTTCGAAA
GTGCTTTCTTAACATCAAAACCTGATCGCAAGTTATCTTTCCGCCGTAAA
GGATCGCGAAATGACGAATTCAGCATGGCGAGTATATTACAAAAAGCATT
GATGCCACCGGGAATTGACGAAGCGACACGAATGGTGTTTAATGCGTCAC
GACGGAAGGGTCGGCGAAATGCCGTATGCGAAGTCGGCGCACATGAGAGA
GACGGTTTAAGAAtgtatttgaatgaaaaaatgaaaggaaAACAAGAAGA
AGTTGAAGAaggttgaaaatgaagatgaagaagacgATTTAATGTGAGAT
AAATTGATTGATTATTGATTGCTTGATTGATGGTATTGATTgatcgattg
attgattgatattgattgatattgattgattgattgattgattgattgat
tgattgatggtAAATCACTTAGACAAGAAGATGGACTATCCAGGAAATGG
ATAAAACCCGTTGGTTGGTAGCCACATATTGAAAAGGTGTAAGATGAAGT
GATATGACTTACAGTATTGTAAAAACAGTCAACCGCTAAGAAAGCTTTAC
TTTACGTTTTATCGCGAAAAAGGACTAAACAAGGTATATGGAATTACGTA
ATAGAAAAGAAGTTGTGATCTACAAGATTTAAGACAATAGTAAATCAATA
CGGAAAGTGAAAAAACTGGAAGAAACTTTTGGTAAAGGTACTGTGTAGGT
TACAGACGAATAATATGAGATAAAACGATGTTGTGAACAATTTTTCAACA
GGACACAGTTTGTAAGGAATCATTTTCGAGTAATTtctcttttaatattt
taaccatGTAGAGATTTTTGTATAGTAAGTATTTGTTCAAACAAACACGA
Ac Coding sequence (CDS) from alignment at sc0000137:246173..247824 >TCONS_00012146 ID=TCONS_00012146|Name=TCONS_00012146|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0000137:246173..247824 (Clytia hemisphaerica)
ATGAAATCTTGTTTTCTCATTTATAGTGAAGTTAAAAAACATTACCGAAA
AATCTCTCTTCCTTTCACTACAATGGTCAGCaaagataaaaagaaacaaG
AACGATCCCGGCTCATCGACGCCGGAAAACAATTCTGTGGCCGAAACTGT
TCTTACGGTAGTGTAGTTCAGGCGTCATCTCAACGTCAACAAAACAGACG
GCATGACGGGAACAATAATAACGGCGACGTCCTTATCGAAGACGTCGGAA
AAAAGATGTCGACACATACGATGAATGGTTCACATAAAGACTTCGGCGAT
TTATTGCAGTCACGATTATCATTGATGTCTTTGAATCGTAAAGACTCGAG
ATGTTCACTGCCAGGGTATACCTCAATGGTAGACATGAAACTGAACTCAC
TAGCTCAATTATCACCGTTAAAAAGCTCAATGATTTCCTTAGGGAAGTTG
GAAGAATGCCCGGAAAACGAATTGGAAACGAGAAGTTCAAGTACTTCTAA
TTTAGACCGAAGACAAGCGAAAACACCCTCGTTAATGCGACGGTTGTCGT
TACGTAAAAAGTCGGGAATGAGATCGCCGGCTAAAATTGGCACTCACAAA
CGTAGCGGTTCAGTCCCTTTCGAAAGTGCTTTCTTAACATCAAAACCTGA
TCGCAAGTTATCTTTCCGCCGTAAAGGATCGCGAAATGACGAATTCAGCA
TGGCGAGTATATTACAAAAAGCATTGATGCCACCGGGAATTGACGAAGCG
ACACGAATGGTGTTTAATGCGTCACGACGGAAGGGTCGGCGAAATGCCGT
ATGCGAAGTCGGCGCACATGAGAGAGACGGTTTAAGAAtgtatttgaatg
aaaaaatgaaaggaaAACAAGAAGAAGTTGAAGAaggttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012146-exon-sc0000137-1491911889:246173..247824 | TCONS_00012146-exon-sc0000137-1491911889:246173..247824 | Clytia hemisphaerica | exon |
| TCONS_00012146-exon-sc0000137-1510915933:246173..247824 | TCONS_00012146-exon-sc0000137-1510915933:246173..247824 | Clytia hemisphaerica | exon |
| TCONS_00012146-exon-sc0000137-1575043694:246173..247824 | TCONS_00012146-exon-sc0000137-1575043694:246173..247824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:246173..247824 . |
Blast
The following BLAST results are available for this feature:
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