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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012138 ID=TCONS_00012138|Name=TCONS_00012138|organism=Clytia hemisphaerica|type=transcript|length=1391bp
ctaaaacaactaaaataacaaaagaagaTGGTGCCGAGCCTACCTGAAAG
TGGTAAGTGGATCACATACAGAATCGGTGACCATGAATTCACTTGCCAAG
TAGGTGATTATGAACATCATCGAACTGAAACGATAGACAGCGCTGGCTCT
CACCAATACTTCGATACTTGTGTAACAGTTAAGCATATGGATGGCAGCGA
AGACACTATGACTTTGGAAGAACTTAGTAGATACAGTTGGTCATATGTTG
AAGTTCCATCACAGGAAACCCTCCAAGCAGCGGCCACCCAGGGCAGCAAT
ATACAACGTGAGATAGAATGTGCTTTTTGTAAGTCCAATACGAGAAAGCT
GAGAGCGTGTAACTCGTGCAAGAAAAGTTATTATTGTGATCAAGAATGTC
AAAAGAATGATTGGAAAACTCACAAGAAGGATTGTTTTTATgacaaaatc
aaaagaaaacctGATCCTCGGTATCCACTGGCTAGAATAAGCAACGATTT
CCGTACAAGACAGCGTGTCATGCAGTCTGAGTTTCACAATATTTTGCTGG
ATGGTTTGTACGGAAGATTTGAGACTATGCACATTCAAGGTTCATTTTTC
CTTCCGCCCTCAACGAGCCCTGATATTGGTAGATGGGTGCGTAATCCAAA
CCCTGCGGATCTGGAACCTTTGGAAAGATACCAAATCCAACATGATTCAC
CGAGAACTGATAACCAGGAATCCGTTATTTTTAAATGGAGAGGTCTGGAA
TCTAGAGGGCATGGGAATGGGGAACCAATTGCTTGTTCTCTAATAGGAAT
CATGGAATGTCTATTGTTGGATGATCAGAGATATAGGGAGGGTGGTTTGC
ATTATTTAGCGGGCGGTCTTGAAAGTCCGGGCGTTTTTTGGGCGATGATA
ATGAATTTCAACACGTTTGGAACTGTGGCACCCTTCCATGCAAATTGTAA
TTGCAGTATAAGTAAATTACcgaaaaagcaaaagaaattaATATCGAAAT
GGGATATGATTTTCAAACGAGCGAAGGAGGATGAATTTGATGTTCAATGT
ATGTTTTCAGATACTCCGGTTGGATGTCATAACTTTGGTGAATGTCCTTT
TAAACATGAGGTTGAGTGTTCTGTGAAAGTTGATAAGAAATGAATCTGAA
TACAAGAGTACAAGACACTGACAGTGGATCGACTAATGTAACCCCATCTC
GTGGGTTGGTCTTTAATGTTTAACCTTTTTTGAGTTCACGCgttatttat
ttttacatatctaTATTTTATAACGTTTTTTAGTCGTTGAGTTCTCGAAT
TTTTTTGAGTTCAGCTATTCATTttttctggtctgcaaaatGAAGTAATT
ACTTAGCGCAAAGTCTTtgcttactctcgggtacctactTA Run BLAST on NCBI protein sequence of TCONS_00012138-protein >TCONS_00012138-protein ID=TCONS_00012138-protein|Name=TCONS_00012138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MVPSLPESGKWITYRIGDHEFTCQVGDYEHHRTETIDSAGSHQYFDTCVT
VKHMDGSEDTMTLEELSRYSWSYVEVPSQETLQAAATQGSNIQREIECAF
CKSNTRKLRACNSCKKSYYCDQECQKNDWKTHKKDCFYDKIKRKPDPRYP
LARISNDFRTRQRVMQSEFHNILLDGLYGRFETMHIQGSFFLPPSTSPDI
GRWVRNPNPADLEPLERYQIQHDSPRTDNQESVIFKWRGLESRGHGNGEP
IACSLIGIMECLLLDDQRYREGGLHYLAGGLESPGVFWAMIMNFNTFGTV
APFHANCNCSISKLPKKQKKLISKWDMIFKRAKEDEFDVQCMFSDTPVGC
HNFGECPFKHEVECSVKVDKK Run BLAST on NCBI transcript from alignment at sc0000137:94945..96335 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012138 ID=TCONS_00012138|Name=TCONS_00012138|organism=Clytia hemisphaerica|type=transcript|length=1391bp|location=Sequence derived from alignment at sc0000137:94945..96335 (Clytia hemisphaerica)
TAagtaggtacccgagagtaagcaAAGACTTTGCGCTAAGTAATTACTTC
attttgcagaccagaaaaAATGAATAGCTGAACTCAAAAAAATTCGAGAA
CTCAACGACTAAAAAACGTTATAAAATAtagatatgtaaaaataaataac
GCGTGAACTCAAAAAAGGTTAAACATTAAAGACCAACCCACGAGATGGGG
TTACATTAGTCGATCCACTGTCAGTGTCTTGTACTCTTGTATTCAGATTC
ATTTCTTATCAACTTTCACAGAACACTCAACCTCATGTTTAAAAGGACAT
TCACCAAAGTTATGACATCCAACCGGAGTATCTGAAAACATACATTGAAC
ATCAAATTCATCCTCCTTCGCTCGTTTGAAAATCATATCCCATTTCGATA
TtaatttcttttgctttttcgGTAATTTACTTATACTGCAATTACAATTT
GCATGGAAGGGTGCCACAGTTCCAAACGTGTTGAAATTCATTATCATCGC
CCAAAAAACGCCCGGACTTTCAAGACCGCCCGCTAAATAATGCAAACCAC
CCTCCCTATATCTCTGATCATCCAACAATAGACATTCCATGATTCCTATT
AGAGAACAAGCAATTGGTTCCCCATTCCCATGCCCTCTAGATTCCAGACC
TCTCCATTTAAAAATAACGGATTCCTGGTTATCAGTTCTCGGTGAATCAT
GTTGGATTTGGTATCTTTCCAAAGGTTCCAGATCCGCAGGGTTTGGATTA
CGCACCCATCTACCAATATCAGGGCTCGTTGAGGGCGGAAGGAAAAATGA
ACCTTGAATGTGCATAGTCTCAAATCTTCCGTACAAACCATCCAGCAAAA
TATTGTGAAACTCAGACTGCATGACACGCTGTCTTGTACGGAAATCGTTG
CTTATTCTAGCCAGTGGATACCGAGGATCaggttttcttttgattttgtc
ATAAAAACAATCCTTCTTGTGAGTTTTCCAATCATTCTTTTGACATTCTT
GATCACAATAATAACTTTTCTTGCACGAGTTACACGCTCTCAGCTTTCTC
GTATTGGACTTACAAAAAGCACATTCTATCTCACGTTGTATATTGCTGCC
CTGGGTGGCCGCTGCTTGGAGGGTTTCCTGTGATGGAACTTCAACATATG
ACCAACTGTATCTACTAAGTTCTTCCAAAGTCATAGTGTCTTCGCTGCCA
TCCATATGCTTAACTGTTACACAAGTATCGAAGTATTGGTGAGAGCCAGC
GCTGTCTATCGTTTCAGTTCGATGATGTTCATAATCACCTACTTGGCAAG
TGAATTCATGGTCACCGATTCTGTATGTGATCCACTTACCACTTTCAGGT
AGGCTCGGCACCAtcttcttttgttattttagttgttttag Coding sequence (CDS) from alignment at sc0000137:94945..96335 >TCONS_00012138 ID=TCONS_00012138|Name=TCONS_00012138|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000137:94945..96335 (Clytia hemisphaerica)
TCATTTCTTATCAACTTTCACAGAACACTCAACCTCATGTTTAAAAGGAC
ATTCACCAAAGTTATGACATCCAACCGGAGTATCTGAAAACATACATTGA
ACATCAAATTCATCCTCCTTCGCTCGTTTGAAAATCATATCCCATTTCGA
TATtaatttcttttgctttttcgGTAATTTACTTATACTGCAATTACAAT
TTGCATGGAAGGGTGCCACAGTTCCAAACGTGTTGAAATTCATTATCATC
GCCCAAAAAACGCCCGGACTTTCAAGACCGCCCGCTAAATAATGCAAACC
ACCCTCCCTATATCTCTGATCATCCAACAATAGACATTCCATGATTCCTA
TTAGAGAACAAGCAATTGGTTCCCCATTCCCATGCCCTCTAGATTCCAGA
CCTCTCCATTTAAAAATAACGGATTCCTGGTTATCAGTTCTCGGTGAATC
ATGTTGGATTTGGTATCTTTCCAAAGGTTCCAGATCCGCAGGGTTTGGAT
TACGCACCCATCTACCAATATCAGGGCTCGTTGAGGGCGGAAGGAAAAAT
GAACCTTGAATGTGCATAGTCTCAAATCTTCCGTACAAACCATCCAGCAA
AATATTGTGAAACTCAGACTGCATGACACGCTGTCTTGTACGGAAATCGT
TGCTTATTCTAGCCAGTGGATACCGAGGATCaggttttcttttgattttg
tcATAAAAACAATCCTTCTTGTGAGTTTTCCAATCATTCTTTTGACATTC
TTGATCACAATAATAACTTTTCTTGCACGAGTTACACGCTCTCAGCTTTC
TCGTATTGGACTTACAAAAAGCACATTCTATCTCACGTTGTATATTGCTG
CCCTGGGTGGCCGCTGCTTGGAGGGTTTCCTGTGATGGAACTTCAACATA
TGACCAACTGTATCTACTAAGTTCTTCCAAAGTCATAGTGTCTTCGCTGC
CATCCATATGCTTAACTGTTACACAAGTATCGAAGTATTGGTGAGAGCCA
GCGCTGTCTATCGTTTCAGTTCGATGATGTTCATAATCACCTACTTGGCA
AGTGAATTCATGGTCACCGATTCTGTATGTGATCCACTTACCACTTTCAG
GTAGGCTCGGCACCAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012138-exon-sc0000137-1491911889:94945..96335 | TCONS_00012138-exon-sc0000137-1491911889:94945..96335 | Clytia hemisphaerica | exon |
| TCONS_00012138-exon-sc0000137-1510915933:94945..96335 | TCONS_00012138-exon-sc0000137-1510915933:94945..96335 | Clytia hemisphaerica | exon |
| TCONS_00012138-exon-sc0000137-1575043694:94945..96335 | TCONS_00012138-exon-sc0000137-1575043694:94945..96335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:94945..96335 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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