TCONS_00012131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012131
Unique NameTCONS_00012131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012131 ID=TCONS_00012131|Name=TCONS_00012131|organism=Clytia hemisphaerica|type=transcript|length=2604bp
CAGACATTTAATGGAAAATTAGTTAACTATGAGCGAAGGAAAACAGAGTC
AATTTCGCCGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAG
GATCctaaaagatgttcaatttgtTTACAACCAAAAACTCCGAATTCTTC
ATCCAACAAGTGTGATCAATGTTTggataaaataaacaaagttcCAACAG
GATTCGCTTTCAGGGCGGTGGAAGGCCAGGGAGataaagaattcgaatgt
cccATTTGTTTGTGTTTAATCAAAGGAGCAACTGAGCTCCCTTGTGAACA
TTTGATGTGTGGGGGATGTTTGCTTCACTATGAGAAAGGACAAACTGAGA
AAGCGGAAAAGGAAGAGCCGAAGAAAAATCCAGAATTTCTTTGCAGTGTA
TGCATGACACCTTACAAAGTTCAAGACaaaaagtcgGTAAAGTCCACTGA
TCGTTTTATACAAAACACGATCAGGGTTCATTGCATGCAAAAAGATTGTC
CGTGGATTGGTTCCATCAAGGATTACGAGgttCATGTTAAGAAATGTGAC
TATAATGGCAAAATAAAATGCCCATATTTCGAGTTGGGTTGTCTCAATAC
GGTGCAAAATTTACCAAAACACAACGCAATGAATCGACAAATCCACGAAG
CTTTGCTTTTGAACGTCGTAAATGTGTTGGCAAAAGAGAGACTAGAAAAT
CGAACACTCTtcgaaaaccaaaacaaaacaatcgaaCGTTTAGAAGAAAG
AATGGACAAAATTGAAGTAGAAAACAAGGATCTGCTGGACAAATATGAGA
CCCAATCCAATCTTCTCATAAAAAATACTAAGGAAATCGAAtcgttgaaa
aatgaaaatgcaaacTTAAACCAAATGCTTCAACAACAAAATGACAATGT
TTTGAATATTCATCAAAAACTTCAATTATTAGAAAAGGAAAATCCTAAAG
ACATTGAAAAGACTTTAAAGGGACAGagaaaagatgttgaaaatttgaaa
acatttgcAAAGACCGTCGGTAAATTACATGGAACATTGAGTGACGTTAA
TGTAAGAgagaattttcgaataaaaaagtACCTTTACGATAAAGATTATA
TAAAAAATGGAGAtgcaaaacaatggaatgatTTTGTCCAACAAATCAAT
ACAAACGAAGATTTCAATGGAGATTGTAATTACCTTCAACAAATGAAAAA
CGATGTGAATCGTTATCAAGGTACTGTATACTCAAAGTCTTGGAATACAA
GGTTATATCAGTTTGCAAATGCAATTGATCGAGGAGTGATGATAAACAAC
CATATAAAACTTTGTTCACCTTACATAGTGAAATACATCTCCGTTATAGA
TCACAACACCTACGATAATTTTAACAGGACAACTCGAGACATGAAATGGA
CAAAACATTCACATGATATAGCAAGTTATTCGAGTGGACATCAAGGTTCA
TGGTGTCTCAATGTTGCTGTCATCTTACCACCTTGGTGTAAAAACGTTTA
CATTCTTCATTGGAACAAAGaagacaaaaagttgaaaattccaCTCAATG
GGACAGTTGTATCTTTGAAAGGAGATGATCAGTATTGCAGTGCTTTTGTC
ATGTTACAAATTGAAGagtaaaacaaaaaactttggatgtaAAATATTTA
TGCTCGTGGTGTCTCAATGTTGCTGTCGTCATGCCACCTTGGTATAAAGG
GAGATAAATGGTATCGCAGTCCTTTTGTCATGTTACAATTGGAatagtga
aataaaaaaactttccaTGAAAAAGGCATACGGTGTCTCAATGTTGCTGT
CATGTTTCCagattatttcaaaatatttctagaggaaaagaggttttaca
aaaatttttgctgcataaaaaactttaacatctctactttttttccagga
agttctttttcaaaattttcaatttcaacaatatttttcaatcgcttaaa
gataggtagcttttttaaatggcccccaaaacggaggtttgcaattttag
tgatttctcgagatatctttaagatatgaatacaaaattttgaccatagt
ttggaaatgtgatttagagagTTTTGGGCATaagtttgtttgataaaatt
tttacagtatacccctggttgtcaaaatgcaggtttggggcccccaaaac
gtaggtgtagttaaaatcaaattattaagcccagtggtaataggggggaa
aactatgaacatatttgtgtttacccttaaatttacgacccgatggatgt
aaaatttatgatttttatgaaatatttcaagattttcgatattgggctct
tccagaaaaaatccgttcatggggggtggaggatatattaattttttcat
gaattacccctggacattttgatttttaACCCCCTGGACATGGGTTATcc
ccctggacattgcaattttttggtattttttcaatacccctggacaattc
atcctccaccccccatgaacggattttttctggaagagcccattgcaaag
tccaaactgaaattttagaaattttcaaaatgacaattttgatttaacaa
cgtcttaatcaagtttctgaaaaccaatctcttttgaaaacaGTTCCATT
CATG
Run BLAST on NCBI

transcript from alignment at sc0000137:512037..517917-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012131 ID=TCONS_00012131|Name=TCONS_00012131|organism=Clytia hemisphaerica|type=transcript|length=5881bp|location=Sequence derived from alignment at sc0000137:512037..517917- (Clytia hemisphaerica)
CAGACATTTAATGGAAAATTAGTTAACTATGAGCGAAGGAAAACAGAGTC
AATTTCGCCGCGAAGAAGAGGAGATTGCCAAAGGTGCCAGAGCCATGGAG
GATCCTAAAAGATGTTCAATTTGTTTACAACCAAAAACTCCGAATTCTTC
ATCCAACAAGTGTGATCAATGTTTGGATAAAATAAACAAAGTTCCAACAG
GATTCGCTTTCAGGGCGGTGGAAGGCCAGGGAGATAAAGAATTCGAATGT
CCCATTTGTTTGTGTTTAATCAAAGGAGCAACTGAGCTCCCTTGTGAACA
TTTGATGTGTGGGGGATGTTTGCTTCACTATGAGAAAGGACAAACTGAGA
AAGCGGAAAAGTAAGTTCAAACTTTTTTTTTATTTAGAAAAATCATAATC
TTTTCTAGATGTCAAGTTGACCCAGAATTGATTTTTCAAGTTAAAAAAGC
TTTTATATTTTTCTCAGATGCCATCAAAACTTTAGTAGAAGATGAAAATA
GTGATAATTTGAAACTTAAATTGGGTTGAGAGAAGACATAGAATTCAGTC
TTAATTTACTTCTAGTTTTCATCCTTTAAAATAAAGAGCAGTGTTTTGAT
TTTTGAAATGAACAGATACACGCTTTTTTTTATAAGAATATCTTCTATAA
GAATATCAGGGTGAAAATTGGCCAAATCGTAAGAATACCCTAAGAATGCC
ATCGAGGGTGAATTTCATAAGAATACAGTCATTTTGTATATTTGGTTAAC
AGAAAAATCTGCTTCCTTTGTTAGAGATGAAGCTTCGTGGAAGAAATGTA
ATTTTAACCCAAATGCAAAACTCTCAATTTGATCATTTCTCATGTTTGTA
AAAAAGTCAAGTCTGAAAAAGTAAGAATGCGTTAAGAATATTTCACCCTC
AATTTTGGCACTTTCTTAAGAATACTTGACCCTTATCCAAAGTAAACTAT
TCTTATAAAAAGAAGCGTGTAATATTGGACAAATTTAAGAAGAAATTAAT
CTTTCTTTTCAGGGAAGAGCCGAAGAAAAATCCAGAATTTCTTTGCAGTG
TATGCATGACACCTTACAAAGTTCAAGACGTGAGTTATCTATTTCAGTAT
TTTTTATTGCGTGCAGAAGGACTGGTATAACTCATATAGATTTCGATACA
CTCCTGGGTGCCTTGATTTGAAAAATTGCAAATTTAGAGATCTTTCAAAT
TCAAAACGCTTCTACGAAAGGGTCGGCGAGGTAGTTAGACTGTGTGATGA
TAATTTTCTTTCTTTGTCGGTATTTGAAGAAAAGTGACGATGTTTAGGTG
TCAAACGTGTCATGTGTTGACAAAATAATAATTTCTGCAATTCTTCACAT
CTAAAGTTGATAAGAGTAAGAGTTGCTACCCACCTAAAAAAGTTCTTTAT
TTTCACTTTTTCAGAAAAAGTCGGTAAAGTCCACTGATCGTTTTATACAA
AACACGATCAGGGTTCATTGCATGCAAAAAGATTGTCCGTGGATTGGTTC
CATCAAGGATTACGAGGTAAATTCACAAACACATTCTTTTTTATTTTACT
AGCCATAACTTTCATTAATGTGCCACCGCAGCAAAACGAACACATAGAGT
TGAATTTGCGTTCAAAAGGAATGATCTTAGCCCTACAGTAATTTTTGTTA
AGAGCGACCTCTCATCTGAGACAAAACTCTTTCAAATGCTAACAAATGTG
TCAAGGGAGTGATTTACAGTCTACTTAGAGTGACATCCGTGCCTTGNCTC
ATCTGAGACAAAATTCTTTCAAATGCTAACAAATGTGTCAAGGGAGTGAT
TTACAGTCTACTTAGAGTGACATCCGTGCCTTGTCTTACACGTTTTTTAT
AAGAGCAATTTCATAAGAATACGAGGTTGAAATTTGGCCAAAACCTTAGA
ACAAATTAAGAAGAATCTGAGCCTCAGATTTCAGAAATTACTGAGAAGTA
CAGGTTTCCATTCTCATTAATATTGACATTTAAGCCTGAAAAACTCATAT
AAAATTAAGAGCAGCCCAGCCCGAATCATATGACTTACTGGTTTTTCCTT
TAAAAAGCGTATATCTGAAGATACTGCTCTTCATATGTTATTTTACTCTA
ATGTACACGTTTAACAACATAACTGTTCGAGTACTTTGAGTAGAAGAGTT
ATATTTTTAACCTATGAAGAGCGCTTAATAACTACTTGTGGTATAAAAAG
GGAACTTCCCAGAAAAGAGAATTTCCTTAGATTCCTTAACTTTCCAGGGA
TAAGAAAAAGACAAACTGAGATTTCAAAATGAGTAATCAGATGAAAATAA
CTCCGAAAAGTCTTTTTGATAATGATAAAACTATAGAGAGACCGTAAGAT
AAGAATGCTACCGTTAAGCGGAACTTATATACTGAAAAACGCGCGCAAAA
ACAAACGCAAAATTATGAGATGTTTGCCCAACTTCCTTATGCGTAAAGCT
ATTAATGCCATCCTCGGGAGCTTTAGGCTCCCTGCGGTGGCAATAAGAAC
CATTTTGTAGAGGCTCGGCTGTTCTTAAACTCGAAAAACTGTTTATCTTC
TCTGCCCTTTGTTCCTTTTGCTATGACACAAACGAATTAAGACTAAGGGC
TCTGACCATAGTGAATTTTTCATAATTACCATGTTTAAAATGTGTTTTCT
GACTGATGTAACCAACAAAACTATGGCATGTTATACATTTTCTGTTAGAC
AAACTATTCCTGAATCTGAAAATTCAAAAATTGCATTGAAGAAATTTGAT
GAAGAAGAAAATAGTGGTTTTTCATCAATTCTTCATCTGTATTTTCCTTA
AAAAAACAGTCATAACTTTTGACACATCTTTTTAGAAAAACTTTCCGCAA
AATTTAAAATAATTCAATTCTTTGCGGACAGTTTGAAAAAAATTCCAAAC
AAAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATAAAAGAAGGTG
ATGCAACATATTATTAACGTCTTTTTAAAGTTCATAACGTCATTTTTGCA
ATTAAGTTCTTAATTACTCTTGAGGGGTTTGACTAAAAAGTAATTTATAA
AGACAATTCTTTGTGAAAAGTGTTAAAGAATCTAAAACATAACTTTTATG
TTCAGATACTAAAATCAATTTTCTGACTATGGTCAGAGCCCTTAAGGCCG
GTCTCCACTTTCGCGCGACATAAGCGAAAACTTTTTGACGTTTTTGTAAG
ATCATTGGTCGGTTGAAAAATGAAGCAATTCCATTGGTAGAAATTGACGT
TACGGATGAAAAAAGTAGAACTTCCTTCATTTTTTTTTTGATCGCGTCAA
ACTTTTTTATGACGTAATCTTTTCTTCAGGCAAAAAATGCTAGTAAAAAA
AACGGTCGCCCATTCCGCGCGAAAGTCCGGCCTTTATATCCTTTTTTATT
TTTTTAGGTTCATGTTAAGAAATGTGACTATAATGGCAAAATAAAATGCC
CATATTTCGAGTTGGGTTGTCTCAATACGGTAAGTTTTCTTTCATCGATG
AAAAGAAAATCTTTTCAAAGAAGATTCTCGGAACAAATTGGTTTTATTTA
TACATTTTTATTTTCAGAATTACAATTTCAGCAATTTTATTAATAAAGAA
ATTAGAAATCGCATTTTTAGTAAAAATGGCCTCCTTGCTAATTTGAACTT
CTGTTAATCGAATTTCTCTATAAATCGAACTAATTTTCCCTGTCAAGGCG
AGACCTTCCTAAATTGCTTTCCATTCGAGTCTCTGACAAATTAGATTCTT
TGAGTTTGAATTAGCGAAAGTCAATTGTATAAAGAACACAAGATTTGAAT
AAGTTGTTTTCACTTCAATTTCTCCAGTTTCTATCATGTTCGTCATCTCT
TATACATTCCGTTTGTTTTTAGTTCGAGGTGCAAAATTTACCAAAACACA
ACGCAATGAATCGACAAATCCACGAAGCTTTGCTTTTGAACGTCGTAAAT
GTGTTGGCAAAAGAGAGACTAGAAAATCGAACACTCTTCGAAAACCAAAA
CAAAACAATCGAACGTTTAGAAGAAAGAATGGACAAAATTGAAGTAGAAA
ACAAGGATCTGCTGGACAAATATGAGACCCAATCCAATCTTCTCATAAAA
AATACTAAGGAAATCGAATCGTTGAAAAATGAAAATGCAAACTTAAACCA
AATGCTTCAACAACAAAATGACAATGTTTTGAATATTCATCAAAAACTTC
AATTATTAGAAAAGGAAAATCCTAAAGACATTGAAAAGACTTTAAAGGGA
CAGAGAAAAGATGTTGAAAATTTGAAAACATTTGCAAAGACCGTCGGTAA
ATTACATGGAACATTGAGTGACGTTAATGTAAGAGAGAATTTTCGAATAA
AAAAGTACCTTTACGATAAAGATTATATAAAAAATGGAGATGCAAAACAA
TGGAATGATTTTGTCCAACAAATCAATACAAACGAAGATTTCAATGGAGA
TTGTAATTACCTTCAACAAATGAAAAACGATGTGAATCGTTATCAAGGTA
CTGTATACTCAAAGTCTTGGAATACAAGGTTATATCAGTTTGCAAATGCA
ATTGATCGAGGAGTGATGATAAACAACCATATAAAACTTTGTTCACCTTA
CATAGTGAAATACATCTCCGTTATAGATCACAACACCTACGATAATTTTA
ACAGGACAACTCGAGACATGAAATGGACAAAACATTCACATGATATAGCA
AGTTATTCGAGTGGACATCAAGGTTCATGGTGTCTCAATGTTGCTGTCAT
CTTACCACCTTGGTGTAAAAACGTTTACATTCTTCATTGGAACAAAGAAG
ACAAAAAGTTGAAAATTCCACTCAATGGGACAGTTGTATCTTTGAAAGGA
GATGATCAGTATTGCAGTGCTTTTGTCATGTTACAAATTGAAGAGTAAAA
CAAAAAACTTTGGATGTAAAATATTTATGCTCGTGGTGTCTCAATGTTGC
TGTCGTCATGCCACCTTGGTATAAAGGGAGATAAATGGTATCGCAGTCCT
TTTGTCATGTTACAATTGGAATAGTGAAATAAAAAAACTTTCCATGAAAA
AGGCATACGGTGTCTCAATGTTGCTGTCATGTTTCCAGATTATTTCAAAA
TATTTCTAGAGGAAAAGAGGTTTTACAAAAATTTTTGCTGCATAAAAAAC
TTTAACATCTCTACTTTTTTTCCAGGAAGTTCTTTTTCAAAATTTTCAAT
TTCAACAATATTTTTCAATCGCTTAAAGATAGGTAGCTTTTTTAAATGGC
CCCCAAAACGGAGGTTTGCAATTTTAGTGATTTCTCGAGATATCTTTAAG
ATATGAATACAAAATTTTGACCATAGTTTGGAAATGTGATTTAGAGAGTT
TTGGGCATAAGTTTGTTTGATAAAATTTTTACAGTATACCCCTGGTTGTC
AAAATGCAGGTTTGGGGCCCCCAAAACGTAGGTGTAGTTAAAATCAAATT
ATTAAGCCCAGTGGTAATAGGGGGGAAAACTATGAACATATTTGTGTTTA
CCCTTAAATTTACGACCCGATGGATGTAAAATTTATGATTTTTATGAAAT
ATTTCAAGATTTTCGATATTGGGCTCTTCCAGAAAAAATCCGTTCATGGG
GGGTGGAGGATATATTAATTTTTTCATGAATTACCCCTGGACATTTTGAT
TTTTAACCCCCTGGACATGGGTTATCCCCCTGGACATTGCAATTTTTTGG
TATTTTTTCAATACCCCTGGACAATTCATCCTCCACCCCCCATGAACGGA
TTTTTTCTGGAAGAGCCCATTGCAAAGTCCAAACTGAAATTTTAGAAATT
TTCAAAATGACAATTTTGATTTAACAACGTCTTAATCAAGTTTCTGAAAA
CCAATCTCTTTTGAAAACAGTTCCATTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006820XLOC_006820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012131-exon-sc0000137-1575043694:517558..517917TCONS_00012131-exon-sc0000137-1575043694:517558..517917Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1575043694:516839..516905TCONS_00012131-exon-sc0000137-1575043694:516839..516905Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1575043694:516402..516503TCONS_00012131-exon-sc0000137-1575043694:516402..516503Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1575043694:514439..514510TCONS_00012131-exon-sc0000137-1575043694:514439..514510Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1575043694:512037..514039TCONS_00012131-exon-sc0000137-1575043694:512037..514039Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1510915933:517558..517917TCONS_00012131-exon-sc0000137-1510915933:517558..517917Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1510915933:516839..516905TCONS_00012131-exon-sc0000137-1510915933:516839..516905Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1510915933:516402..516503TCONS_00012131-exon-sc0000137-1510915933:516402..516503Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1510915933:514439..514510TCONS_00012131-exon-sc0000137-1510915933:514439..514510Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1510915933:512037..514039TCONS_00012131-exon-sc0000137-1510915933:512037..514039Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1491911889:517558..517917TCONS_00012131-exon-sc0000137-1491911889:517558..517917Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1491911889:516839..516905TCONS_00012131-exon-sc0000137-1491911889:516839..516905Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1491911889:516402..516503TCONS_00012131-exon-sc0000137-1491911889:516402..516503Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1491911889:514439..514510TCONS_00012131-exon-sc0000137-1491911889:514439..514510Clytia hemisphaericaexon
TCONS_00012131-exon-sc0000137-1491911889:512037..514039TCONS_00012131-exon-sc0000137-1491911889:512037..514039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:512037..517917 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200951	0.210849	0	0	4.50169	3.47436	3.87645	3.56399	2.57112	2.34202	1.73017	1.2902	2.15952	2.14549	2.6685	3.72005	1.81744	3.36828	3.25204	3.99934	2.09402	1.12238	1.60199	0.751045	7.02955	9.08722	3.81683	5.21586	2.82552	2.82313
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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