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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012129 ID=TCONS_00012129|Name=TCONS_00012129|organism=Clytia hemisphaerica|type=transcript|length=1997bp
cgcagagagaaattttttcatagcccttttttgctttttttttgtcaact
tttacgcttcttatacgcatcaaggaaaagaaaaagaaaaagaaatcatc
aaaaaagaatgaagaagaaaacagtTCTCATAATTGGAGCTGGCATTTGC
GGTCTTGCCTGTGCAAGAGAATTAACAAAACATGACGCAATTAATGTTGT
TGTTTTGGAAGCTTCGAATAGAATTGGAGGCAGAATCCATTCCCATACAA
CGGAAGATGGTGTTTCCTTAGAACTTGGAGCACATTATATCCATGGTACC
ATTGGTAATCCCATCTACGATTTCGCTGTCGAAAAAGGAATCATTGAGAA
AACCATTGAAAAGCAAGAATGGGAATCACATGAGACGTTACGGTTTTTTG
GTAAAGATATCACACTTGATtctacaaacaaaacaaaagctgCTGATATG
GCCGAAAACTTCGCCGAATCAATGATTGATCAACTTTGTGAAGGACAAGA
CCTtgattctaaaaactttgaCAACCTTGGGGACTATTGGAATCACAAGG
TAGAAACATTTAAAGAAGGATTGTCGCCAGGTGATGAACCACTCATCAAT
GCAATGCAATGTGTTTTTAACCATTTAAGATTGACAGAGATGGCTTACAA
TGGTTGTGATCGATTAGAACAAATCGATATTGAATCGTATGTTGTCGATG
AGGAGATCCCTGGAAATCGATATTTTAACCCGATTGCAGGATACTCTAAG
ATTGTAGATGCTTTGTATGATGATATTCGTGAAGGTGTTGTTTTAAGGAA
CCACCGTGTATATAAAGTGGACCATTCAACGCCAAAAGAGAATGGGTTTA
GAGTGTTATGCGAGAATGGTGAATCGTTCAACGCTGATATTGTTCTTGTT
ACAGCTTCTGTAAATGTTTTGAAGTCGATGTTGGTCACTGAAGGATTTTT
TGAGCCACCNAGATGCTTTGTATGAGGATATTCGTGAAGGTGTTGTTTTA
AGGAACCACCGTGTATATAAAGTGGACCATTCAACGCCAAAAGAGAATGG
GTTTAGAGTGTTATGCGAGAATGGTGAATCGTTCAACGCTGATATTGTTC
TTGTTACAGCTTCTGTAAATGTTTTGAAGTCGATGTTGGTCACTGAAGGA
TTTTTTGAGCCACCATTGCCGTGTGAGAAGAAACAGGCCTTAGAAAAAGT
GAAACTATCGAATGTAGtgaaactgtttttcaaatttacaaatcCATTCC
CTAATGAGGATGTCAAATATTTGCACTTTTTCCCGTCAGAACAATGTATG
AAAATGTCGAAATTGGGATGGGTATATGAATTAGAGCGTATTGGAAATTC
AGACTGGTGGTTAACTTGGATTGTCGGTGACCTGATCACAGAATATCACA
ATTATGATTCCAAAAAGATTTTTGCTAAAGAATTGTTTGAACATCTGAAA
ACACAATATTTAGACTTCCCAAGTGATTTGGAGATTGATAATGATAGCAT
TGTGACACATGATTGGAGTCAAGACCCAAATTTCCAAGGTGGTTATTCTT
ATTTTGAAACAGGAGGAAATATTAAAGAAATTATACCAATATTAAGGAAG
CCTATTGTTTATGATACGAATGAGACTAAATGTAGATTGATTCTGTCTGG
TGAGATCACAATGCAAGATTATTTTTCGACAACTCATGCGGGATTTACTG
CTGGTGTTCGAGACGGAAAAGAAATTGCTAAATTGCTTGGTTTTTGATTG
CATCAACAGAAAAGTATGCACTAATATTTTGCTTTATCATTTTGTAGATT
GATATCGATTCGATTTTGTATTATATCATAGTTTGCGTAGAAAGTTCCAT
CGATCTCTAGAGATCATATATTGAGAGGCTCAATATTAAGCATatattca
atgggtaaaagttggttattgagatttattaaccctaggtgatgtaatat
tcaacgaggcgaagcTGTCTATTGTATAGACTACGTTTAAAGTGGCT Run BLAST on NCBI transcript from alignment at sc0000137:446131..450388- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012129 ID=TCONS_00012129|Name=TCONS_00012129|organism=Clytia hemisphaerica|type=transcript|length=4258bp|location=Sequence derived from alignment at sc0000137:446131..450388- (Clytia hemisphaerica)
CGCAGAGAGAAATTTTTTCATAGCCCTTTTTTGCTTTTTTTTTGTCAACT
TTTACGCTTCTTATACGCATCAAGGAAAAGAAAAAGAAAAAGAAATCATC
AAAAAAGAATGAAGAAGAAAACAGTTCTCATAATTGGAGCTGGCATTTGC
GGTCTTGCCTGTGCAAGAGAATTAACAAAACATGACGCAATTAATGTTGT
TGTTTTGGAAGCTTCGAATAGAATTGGTAAGTGTTTTAGAGCTGATTTCC
TGGCATCAATAGAAAATGGTTTTCTCATTTTTCTGTTTCAAAAATATACT
TAAAGAAATTAGAAATATTTCCTTGATTCTGTAAATTTTTCTGTAAATGT
TTCTTACCATATGCCAAAATATACATGTTGGGTCAGGGGCAAATGAAGGT
GAGACTGGCTATGTTCGTAACACAATTGAAGTATGGTTCGAACTAAAATG
AAAAAATTAACTAAGTCTTACAAAAATATCTAAGTTGAAAATAAATTGAA
GTCTAATTGCATTGAGAATAAATTGAATTTTAAGTTATAATTGAAGTGTC
TATGTAAAAGGTTTAAGTCGAAGAAAAAATAGTTGAAAAAAAAAGTTGAA
ATGGCTAAGTCCTAGCAAGGCAAAAAGGCAACACCCAGGCAAAATGGCAG
ACAGGAAAAGCAAACACTGAAAAGAAAAAGCAAAACTATACTTACATATG
CTAAAGCAACTCTTTTCATAAAATGGCTCAAGCCTATCAGTCATTCTAAG
ATCCAGGGGTTTCTGCTGCTAATTTACATCAAAGTTACATGCTTTTAAAA
AGGTGTTATTTCAATGTTTTCTAGATAATTAGCCAGGGATGCAAACGTTT
TTATTAGAACATATTTATATTTCTTTATGATTTCATTGAAAATATTAATG
ATATTTCAGGAGGCAGAATCCATTCCCATACAACGGAAGATGGTGTTTCC
TTAGAACTTGGAGCACATTATATCCATGGTACCATTGGTAATCCCATCTA
CGATTTCGCTGTCGAAAAAGGAATCATTGAGAAAACCATTGAAAAGCAAG
GTATATTTTATTGGTACAAGTTGTATCAAATTCCTTTTACGAGGTTTACA
TTTCCCATGATTGTTAGAAAACATGAATCCACACTAAAATCTTGGTTGAT
CCTAAATAACTTATACTTATACTTATTATTATATACCTGTAGGCAAAAAC
AGCCATTGAATAATTCCTGATATACCATGGCAGAATTTTTTTCTTCAAAT
TTTGCTTTCAAATTTAGATTTTTTGTCGCTCTTGAGTTGTTTATCAAAAA
GATTTATTAGAATAAATCTTTTGTCGATTTCATTAACAAATCCATGACTA
AAAGTAATTAAGAAAATCATTAAAAAGAAAAACATTCGACCGCTCGATTA
TGGGAGTGTTTTATGTGAATCGTTCGACTAGTATTTACATAATTTATATA
TTGTTTTTGTCTCTAGGTAAATGAAACATATATTCAATAGGCTTTCGTTG
GTTATTGGATTTATTAACCCTTGGTGATGCATATTCAACTGATTGAATAT
TACATAACCTCGGGTTAATAAAGCTCAATAACCAACTTTTACCCATTGAA
TATCTGCTTATTATATAATGCTAAGAAAAAAGTGTTCCATTCGACTTGTT
AAAAGTTTTCGGCAAGTATTTTAAAGGCTCTCACAAGGTAGTTTCAAACA
TTATAACTGGGAGATCAGCAGTCATAATCTCGTACCGGTCTAATAAACAG
AACATAAGGTCGAATGCCCTGAATAGAAGATCCATAGATATAACTAGTAT
AACCACTGATTTCTAATTAGATACCTGACTGAATCAATCTTCACATAATA
TAGAGGTGTGTCTTGTAATGGGCTCTAAAATGTCCATACATGGGGGGGGT
GGAGGATAGTGTCCGGGGGATAGTGAAAGATCTAAAAAAATTGCCTTGTC
CCGGGGGGTAATCTTGCTCTGTTTGAGGGTAATTTTGATTGTCCATGGGG
TCAACTGATGCTTGTTCGGGGGTTAGACCTGCTGTCAAAAGTCACAATGT
CCTGAGGGTAAATTGCAAAAAAAATATTAAATCATGCACCCCCTCCCCAT
ATTCAAATCTTTCTGGAAAAATTGAGCTTTCATGTTTGTTTTTTTCTGTT
CTGGTTGTCAACAGTGTGATCCAATTGTTTTTGAAATTAATAGTCTGAAA
AATCTGACGTAAATAGAAGACAACATACTGGACTAGTCGACTTGATTACT
GGGCACACTTTTAACGGGGAATCTGTAAGCAGTTCAAAGTAGTGGAGAAA
TTTAATGTATTTCATTATAACCATTGACCTTTATATACCCTGGGCCAAGT
TTCTCTATCCCGGCTAAGCAAAATCTTTGATCGGAGTTTTTTGAAAAGTG
GTATATACCATAATGGCGGCACTACTCAATAGCGATGTAAATGTATCGAG
AGCGTTAGATCTACTTTCCCTCGAAAACTTTGGATGATGTAGCGCCGTTA
GACGTTAATTTTTAACAGGGCAATGGGTTCTTTATGGGTACCAATTCAAA
AAAACTCCGATCAAAGATGGCGGATATAGCTTGGTCCAGGGATATATAAA
GGACAGTGATTATAACTTCTGATCTTAGAATGGGAATCACATGAGACGTT
ACGGTTTTTTGGTAAAGATATCACACTTGATTCTACAAACAAAACAAAAG
CTGCTGATATGGCCGAAAACTTCGCCGAATCAATGATTGATCAACTTTGT
GAAGGACAAGACCTTGATTCTAAAAACTTTGACAACCTTGGGGACTATTG
GAATCACAAGGTAGAAACATTTAAAGAAGGATTGTCGCCAGGTGATGAAC
CACTCATCAATGCAATGCAATGTGTTTTTAACCATTTAAGATTGACAGAG
ATGGCTTACAATGGTTGTGATCGATTAGAACAAATCGATATTGAATCGTA
TGTTGTCGATGAGGAGATCCCTGGAAATCGATATTTTAACCCGATTGCAG
GATACTCTAAGATTGTAGATGCTTTGTATGATGATATTCGTGAAGGTGTT
GTTTTAAGGAACCACCGTGTATATAAAGTGGACCATTCAACGCCAAAAGA
GAATGGGTTTAGAGTGTTATGCGAGAATGGTGAATCGTTCAACGCTGATA
TTGTTCTTGTTACAGCTTCTGTAAATGTTTTGAAGTCGATGTTGGTCACT
GAAGGATTTTTTGAGCCACCNAGATGCTTTGTATGAGGATATTCGTGAAG
GTGTTGTTTTAAGGAACCACCGTGTATATAAAGTGGACCATTCAACGCCA
AAAGAGAATGGGTTTAGAGTGTTATGCGAGAATGGTGAATCGTTCAACGC
TGATATTGTTCTTGTTACAGCTTCTGTAAATGTTTTGAAGTCGATGTTGG
TCACTGAAGGATTTTTTGAGCCACCATTGCCGTGTGAGAAGAAACAGGCC
TTAGAAAAAGTGAAACTATCGAATGTAGTGAAACTGTTTTTCAAATTTAC
AAATCCATTCCCTAATGAGGATGTCAAATATTTGCACTTTTTCCCGTCAG
AACAATGTATGAAAATGTCGAAATTGGGATGGGTATATGAATTAGAGCGT
ATTGGAAATTCAGACTGGTGGTTAACTTGGATTGTCGGTGACCTGATCAC
AGAATATCACAATTATGATTCCAAAAAGATTTTTGCTAAAGAATTGTTTG
AACATCTGAAAACACAATATTTAGACTTCCCAAGTGATTTGGAGATTGAT
AATGATAGCATTGTGACACATGATTGGAGTCAAGACCCAAATTTCCAAGG
TGGTTATTCTTATTTTGAAACAGGAGGAAATATTAAAGAAATTATACCAA
TATTAAGGAAGCCTATTGTTTATGATACGAATGAGACTAAATGTAGATTG
ATTCTGTCTGGTGAGATCACAATGCAAGATTATTTTTCGACAACTCATGC
GGGATTTACTGCTGGTGTTCGAGACGGAAAAGAAATTGCTAAATTGCTTG
GTTTTTGATTGCATCAACAGAAAAGTATGCACTAATATTTTGCTTTATCA
TTTTGTAGATTGATATCGATTCGATTTTGTATTATATCATAGTTTGCGTA
GAAAGTTCCATCGATCTCTAGAGATCATATATTGAGAGGCTCAATATTAA
GCATATATTCAATGGGTAAAAGTTGGTTATTGAGATTTATTAACCCTAGG
TGATGTAATATTCAACGAGGCGAAGCTGTCTATTGTATAGACTACGTTTA
AAGTGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012129-exon-sc0000137-1575043694:450163..450388 | TCONS_00012129-exon-sc0000137-1575043694:450163..450388 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1575043694:449339..449479 | TCONS_00012129-exon-sc0000137-1575043694:449339..449479 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1575043694:446131..447760 | TCONS_00012129-exon-sc0000137-1575043694:446131..447760 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1510915933:450163..450388 | TCONS_00012129-exon-sc0000137-1510915933:450163..450388 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1510915933:449339..449479 | TCONS_00012129-exon-sc0000137-1510915933:449339..449479 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1510915933:446131..447760 | TCONS_00012129-exon-sc0000137-1510915933:446131..447760 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1491911889:450163..450388 | TCONS_00012129-exon-sc0000137-1491911889:450163..450388 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1491911889:449339..449479 | TCONS_00012129-exon-sc0000137-1491911889:449339..449479 | Clytia hemisphaerica | exon |
| TCONS_00012129-exon-sc0000137-1491911889:446131..447760 | TCONS_00012129-exon-sc0000137-1491911889:446131..447760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:446131..450388 - |
Blast
BLAST of TCONS_00012129 vs. Swiss-Prot (Human)
Match: SMOX (Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.053e-17 Identity = 66/241 (27.39%), Postives = 108/241 (44.81%), Query Frame = 2
Query: 1058 VLCENGESFNADIVLVTASVNVLKSMLVTEGFFEPPLPCEKKQALEKVKLSNVVKLFFKFTNPFPNEDVKYLHF------------FPSEQ-CMKMSKLGWVYELERIGNSDWWLTWIVGDLITEYHNYDSKKIFAKELFEHLKTQYLDFPSDLEIDNDSIVTHDWSQDPNFQGGYSYFETGGNIKEIIPILRKPIVY--DTNETKCRLILSGEITMQDYFSTTHAGFTAGVRDGKEIAKL 1735
V CE+ E AD V+VT S+ VLK + FF P LP EK A+ ++ + K+F +F PF + L F +P E K+ +Y ER G+ WI G+ D + + E+ + Q+ P+ + I+ W +P F+G YSY + G + + + L KP+ Y + +++ SGE T + Y+STTH +G R+ + ++
Sbjct: 315 VECEDCELIPADHVIVTVSLGVLKRQYTS--FFRPGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESHTLTYPPELWYRKICGFDVLYPPERYGHV--LSGWICGEEALVMEKCDDEAV--AEICTEMLRQFTGNPNIPKPRR--ILRSAWGSNPYFRGSYSYTQVGSSGAD-VEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEM 546
The following BLAST results are available for this feature:
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