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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012115 ID=TCONS_00012115|Name=TCONS_00012115|organism=Clytia hemisphaerica|type=transcript|length=1300bp
TAGAAAGACAATTTTTTTAGCATAATATTCATTATTAAGTAAACTAGATA
ATTAGAATACCAAAAAGAATGGAGCAAAATCAAATTCCAGATGTTTCTAA
AGACGCTGTTCTTGTGCAGAGTGTCAAAATGCCCGATGATGCACCACAAG
TGAAAGGCTATGATTTCAACGAAGGATTGAATTACGAAAAGTTAATGAAA
TCGTACTATTCCACTGGTTTTCAAGCGTTACATTTGGGACAGGCTTTTGA
GGAGATCAATAATATGCTAAAATGTAGAGATCTTCCTCTTGAGAATGTTA
GTCAGCATACAGATGAAAAGTTGCGTCCCAAGACAAATTGCACCATTTTC
TTGGGTTATACATCGAATATGGCCTCAGCAGGGATCAGAGATGTGATCCG
TTTTTTAGTGCAGCACAAGCTGGTTGATGTAGTTGTCACTACAGCAGGAG
GGATAGAGGAAGATTTCATTAAGTGTATGGCACCTACATATCTTGGTGAT
TTTAAATTGAAAGGTGCTACTTTACGTAAACAAGGCTTGAATCGTACTGG
TAATCTGATTGTTCCCAATGATAATTACTGCACTTTTGAAAATTGGTTTC
AACCTATATTGGATCAAATGCTAAAAGAGCAAAATGAGAATGGTACTAAC
TGGACACCGTCAAAAATGATTGCACGAATGGGTAAAGAAATTGATAATGA
AGAGTCCATTTACTATTGGGCATACAAGAACAGTATTCCAGTTTTCAGCC
CAGCTATAACTGACGGTTCAATTGGTGATAATATTTATTTCCATAGTTTC
CGTAAACCTGGATTAAGAATTGACATTGCAGAGGATATTACCTACATTAA
TAATTTGTCAGTTAAATCTAAAAATACTGGGCAGGTCATTATTGGTGGCG
GTTTGATCAAACATCATATCTGTAATGCCAATTTGATGCGTAATGGTGCA
GATTACAGTGTTTATGTTAATACAGCGGGAGAATTTGATGGCTCAGATGC
AGGGGCCGCACCAGATGAGGCTGTCTCttggggaaaaattaaaatgactG
CAAAGCCAGTCAAAGTTGTCGCAGACGCTACTCTTGTATTTCCATTGATT
GTAGCGGAGACATTTGCTAAATATCATTATGCAAAGAAAGAACAACAGAT
GTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTCTGTAATATAGGCAGAT
CCTTGATATAGCGAATGCATAATAGGTATATGATTTCAAGGgcatttaca
aattttttttttattttgatatcatTTAGGCTATGCCATATCTTTGAAAC Run BLAST on NCBI transcript from alignment at sc0000137:101631..103588- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012115 ID=TCONS_00012115|Name=TCONS_00012115|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at sc0000137:101631..103588- (Clytia hemisphaerica)
TAGAAAGACAATTTTTTTAGCATAATATTCATTATTAAGTAAACTAGATA
ATTAGAATACCAAAAAGAATGGAGCAAAATCAAATTCCAGATGTTTCTAA
AGACGCTGTTCTTGTGCAGAGTGTCAAAATGCCCGATGATGCACCACAAG
TGAAAGGCTATGATTTCAACGAAGGATTGAATTACGAAAAGTTAATGAAA
TCGTACTATTCCACTGGTTTTCAAGCGTTACATTTGGGACAGGCTTTTGA
GGAGATCAATAATATGCTAAAATGTAGAGATCTTCCTCTTGAGAATGTTA
GTCAGCATACAGATGAAAAGTTGCGTCCCAAGACAAATTGCACCATTTTC
TTGGGTTATACATCGAATATGGCCTCAGCAGGGATCAGAGATGTGATCCG
TTTTTTAGTGCAGCACAAGCTGGTTGATGTAGTTGTCACTACAGCAGGAG
GGATAGAGGAAGATTTCATTAAGTGTATGGCACCTACATATCTTGGTGAT
TTTAAATTGAAAGGTGCTACTTTACGTAAACAAGGCTTGAATCGTACTGG
TAATCTGATTGTTCCCAATGATAATTACTGCACTTTTGAAAATTGGTTTC
AACCTATATTGGATCAAATGCTAAAAGAGCAAAATGAGAATGGTACTAAC
TGGACACCGTCAAAAATGATTGCACGAATGGGTAAAGAAATTGATAATGA
AGAGTCCATTTACTATTGGGCATACAAGAACAGTATTCCAGTTTTCAGCC
CAGCTATAACTGACGGTTCAATTGGTGATAATATTTATTTCCATAGTTTC
CGTAAACCTGGATTAAGAATTGACATTGCAGAGGATATTACCTACATTAA
TAATTTGTCAGTTAAATCTAAAAATACTGGGCAGGTCATTATTGGTGGCG
GTTTGATCAAACATCATATCTGTAATGCCAATTTGATGCGTAATGGTGCA
GATTACAGTGTTTATGTTAATACAGCGGGAGAATTTGATGGCTCAGATGC
AGGGGCCGCACCAGATGAGGCTGTTTCTTGGGGAAAAATTAAAATGACTG
CAAAACCAGTCAAAGTTGTCGCAGACGCTACTCTTGTATTTCCATTGATT
GTAGCGGAGACATTTGCTAAATATCACTATGCAAAGAAAGAACAACAGAT
GTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTCTGTNCAAGGCTTGAAT
CGTACTGGTAATCTGATTGTTCCCAATGATAATTACTGCACTTTTGAAAA
TTGGTTTCAACCTATATTGGATCAAATGCTAAAAGAGCAAAATGAGAATG
GTACTAACTGGACACCGTCAAAAATGATTGCACGAATGGGTAAAGAAATT
GATAATGAAGAGTCCATTTACTATTGGGCATACAAGAACAGTATTCCAGT
TTTCAGCCCAGCTATAACTGACGGTTCAATTGGTGATAATATTTATTTCC
ATAGTTTCCGTAAACCTGGATTAAGAATTGACATTGCAGAGGACATTACA
TACATTAATAATTTGTCTGTCAAATCTAAAAATACTGGGCAGGTCATCAT
TGGTGGAGGTTTGATCAAACATCATATCTGTAATGCCAATTTGATGCGTA
ATGGTGCAGATTACAGTGTTTATGTTAATACAGCGGGAGAATTTGATGGC
TCAGATGCAGGTGCTGCACCAGACGAGGCTGTCTCTTGGGGAAAAATTAA
AATGACTGCAAAGCCAGTCAAAGTTGTCGCAGACGCTACTCTTGTATTTC
CATTGATTGTAGCGGAGACATTTGCTAAATATCATTATGCAAAGAAAGAA
CAACAGATGTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTCTGTAATAT
AGGCAGATCCTTGATATAGCGAATGCATAATAGGTATATGATTTCAAGGG
CATTTACAAATTTTTTTTTTATTTTGATATCATTTAGGCTATGCCATATC
TTTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012115-exon-sc0000137-1575043694:102570..103588 | TCONS_00012115-exon-sc0000137-1575043694:102570..103588 | Clytia hemisphaerica | exon |
| TCONS_00012115-exon-sc0000137-1575043694:101631..101911 | TCONS_00012115-exon-sc0000137-1575043694:101631..101911 | Clytia hemisphaerica | exon |
| TCONS_00012115-exon-sc0000137-1510915933:102570..103588 | TCONS_00012115-exon-sc0000137-1510915933:102570..103588 | Clytia hemisphaerica | exon |
| TCONS_00012115-exon-sc0000137-1510915933:101631..101911 | TCONS_00012115-exon-sc0000137-1510915933:101631..101911 | Clytia hemisphaerica | exon |
| TCONS_00012115-exon-sc0000137-1491911889:102570..103588 | TCONS_00012115-exon-sc0000137-1491911889:102570..103588 | Clytia hemisphaerica | exon |
| TCONS_00012115-exon-sc0000137-1491911889:101631..101911 | TCONS_00012115-exon-sc0000137-1491911889:101631..101911 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:101631..103588 - |
Blast
BLAST of TCONS_00012115 vs. Swiss-Prot (Human)
Match: DHYS (Deoxyhypusine synthase OS=Homo sapiens GN=DHPS PE=1 SV=1) HSP 1 Score: 480.715 bits (1236), Expect = 5.096e-168 Identity = 217/352 (61.65%), Postives = 284/352 (80.68%), Query Frame = 3
Query: 75 QNQIPDVSKDAVLVQSVKMPDDAPQVKGYDFNEGLNYEKLMKSYYSTGFQALHLGQAFEEINNMLKCRDLPL-ENVSQHTD--EKLRPKTNCTIFLGYTSNMASAGIRDVIRFLVQHKLVDVVVTTAGGIEEDFIKCMAPTYLGDFKLKGATLRKQGLNRTGNLIVPNDNYCTFENWFQPILDQMLKEQNENGTNWTPSKMIARMGKEIDNEESIYYWAYKNSIPVFSPAITDGSIGDNIYFHSFRKPGLRIDIAEDITYINNLSVKSKNTGQVIIGGGLIKHHICNANLMRNGADYSVYVNTAGEFDGSDAGAAPDEAVSWGKIKMTAKPVKVVADATLVFPLIVAETFAK 1121
+ + P + AVL S +P ++ QV+GYDFN G+NY L++++ +TGFQA + G+A +++N M++ + PL ++ QH D + RP T+CTIFLGYTSN+ S+GIR+ IR+LVQH +VDV+VTTAGG+EED IKC+APTYLG+F L+G LR+ G+NR GNL+VPN+NYC FE+W PILDQM+ EQN G WTPSKMIAR+GKEI+N ES+YYWA KN IPVFSPA+TDGS+GD I+FHS++ PGL +DI ED+ IN ++ +K TG +I+GGG++KHHI NANLMRNGADY+VY+NTA EFDGSD+GA PDEAVSWGKI++ A+PVKV ADA+LVFPL+VAETFA+
Sbjct: 6 EREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQ 357
The following BLAST results are available for this feature:
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