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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012113 ID=TCONS_00012113|Name=TCONS_00012113|organism=Clytia hemisphaerica|type=transcript|length=2152bp
cTTTTctcacattttgaaatttcttgttTTCGAGGGTGCTCTTCACGAAA
AAACAGTGCGTTTTGAAAAAGTCTCCACAACTCTCCAGGAGCCTGTGGAG
GTCATGGTTTTATCCGTAGAAAGACAATTTTTTTAGCATAATATTCATTA
TTAAGTAAACTAGATAATTAGAATACCAAAAAGAATGGAGCAAAATCAAA
TTCCAGATGTTTCTAAAGACGCTGTTCTTGTGCAGAGTGTCAAAATGCCC
GATGATGCACCACAAGTGAAAGGCTATGATTTCAACGAAGGATTGAATTA
CGAAAAGTTAATGAAATCGTACTATTCCACTGGTTTTCAAGCGTTACATT
TGGGACAGGCTTTTGAGGAGATCAATAATATGCTAAAATGTAGAGATCTT
CCTCTTGAGAATGTTAGTCAGCATACAGATGAAAAGTTGCGTCCCAAGAC
AAATTGCACCATTTTCTTGGGTTATACATCGAATATGGCCTCAGCAGGGA
TCAGAGATGTGATCCGTTTTTTAGTGCAGCACAAGCTGGTTGATGTAGTT
GTCACTACAGCAGGAGGGATAGAGGAAGATTTCATTAAGTGTATGGCACC
TACATATCTTGGTGATTTTAAATTGAAAGGTGCTACTTTACGTAAACAAG
GCTTGAATCGTACTGGTAATCTGATTGTTCCCAATGATAATTACTGCACT
TTTGAAAATTGGTTTCAACCTATATTGGATCAAATGCTAAAAGAGCAAAA
TGAGAATGGTACTAACTGGACACCGTCAAAAATGATTGCACGAATGGGTA
AAGAAATTGATAATGAAGAGTCCATTTACTATTGGGCATACAAGAACAGT
ATTCCAGTTTTCAGCCCAGCTATAACTGACGGTTCAATTGGTGATAATAT
TTATTTCCATAGTTTCCGTAAACCTGGATTAAGAATTGACATTGCAGAGG
ATATTACCTACATTAATAATTTGTCAGTTAAATCTAAAAATACTGGGCAG
GTCATTATTGGTGGCGGTTTGATCAAACATCATATCTGTAATGCCAATTT
GATGCGTAATGGTGCAGATTACAGTGTTTATGTTAATACAGCGGGAGAAT
TTGATGGCTCAGATGCAGGGGCCGCACCAGATGAGGCTGTTTCttgggga
aaaattaaaatgactGCAAAACCAGTCAAAGTTGTCGCAGACGCTACTCT
TGTATTTCCATTGATTGTAGCGGAGACATTTGCTAAATATCACTATGCAA
AGAAAGAACAACAGATGTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTC
TGTNCAAGGCTTGAATCGTACTGGTAATCTGATTGTTCCCAATGATAATT
ACTGCACTTTTGAAAATTGGTTTCAACCTATATTGGATCAAATGCTAAAA
GAGCAAAATGAGAATGGTACTAACTGGACACCGTCAAAAATGATTGCACG
AATGGGTAAAGAAATTGATAATGAAGAGTCCATTTACTATTGGGCATACA
AGAACAGTATTCCAGTTTTCAGCCCAGCTATAACTGACGGTTCAATTGGT
GATAATATTTATTTCCATAGTTTCCGTAAACCTGGATTAAGAATTGACAT
TGCAGAGGACATTACATACATTAATAATTTGTCTGTCAAATCTAAAAATA
CTGGGCAGGTCATCATTGGTGGAGGTTTGATCAAACATCATATCTGTAAT
GCCAATTTGATGCGTAATGGTGCAGATTACAGTGTTTATGTTAATACAGC
GGGAGAATTTGATGGCTCAGATGCAGGTGCTGCACCAGACGAGGCTGTCT
CttggggaaaaattaaaatgactGCAAAGCCAGTCAAAGTTGTCGCAGAC
GCTACTCTTGTATTTCCATTGATTGTAGCGGAGACATTTGCTAAATATCA
TTATGCAAAGAAAGAACAACAGATGTAAAGCTGGTCGGCTTTTCGATTTT
GTTCTTTCTGTAATATAGGCAGATCCTTGATATAGCGAATGCATAATAGG
TATATGATTTCAAGGgcatttacaaattttttttttattttgatatcatT
TAGGCTATGCCATATCTTTGAAACATGAACATTTCTCTTTTGGATATGTG
TTTTTCTTTCAtgttgtttttatgtttttgatattAAATTAATACACACA
GG Run BLAST on NCBI transcript from alignment at sc0000137:101553..103704- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012113 ID=TCONS_00012113|Name=TCONS_00012113|organism=Clytia hemisphaerica|type=transcript|length=2152bp|location=Sequence derived from alignment at sc0000137:101553..103704- (Clytia hemisphaerica)
CTTTTCTCACATTTTGAAATTTCTTGTTTTCGAGGGTGCTCTTCACGAAA
AAACAGTGCGTTTTGAAAAAGTCTCCACAACTCTCCAGGAGCCTGTGGAG
GTCATGGTTTTATCCGTAGAAAGACAATTTTTTTAGCATAATATTCATTA
TTAAGTAAACTAGATAATTAGAATACCAAAAAGAATGGAGCAAAATCAAA
TTCCAGATGTTTCTAAAGACGCTGTTCTTGTGCAGAGTGTCAAAATGCCC
GATGATGCACCACAAGTGAAAGGCTATGATTTCAACGAAGGATTGAATTA
CGAAAAGTTAATGAAATCGTACTATTCCACTGGTTTTCAAGCGTTACATT
TGGGACAGGCTTTTGAGGAGATCAATAATATGCTAAAATGTAGAGATCTT
CCTCTTGAGAATGTTAGTCAGCATACAGATGAAAAGTTGCGTCCCAAGAC
AAATTGCACCATTTTCTTGGGTTATACATCGAATATGGCCTCAGCAGGGA
TCAGAGATGTGATCCGTTTTTTAGTGCAGCACAAGCTGGTTGATGTAGTT
GTCACTACAGCAGGAGGGATAGAGGAAGATTTCATTAAGTGTATGGCACC
TACATATCTTGGTGATTTTAAATTGAAAGGTGCTACTTTACGTAAACAAG
GCTTGAATCGTACTGGTAATCTGATTGTTCCCAATGATAATTACTGCACT
TTTGAAAATTGGTTTCAACCTATATTGGATCAAATGCTAAAAGAGCAAAA
TGAGAATGGTACTAACTGGACACCGTCAAAAATGATTGCACGAATGGGTA
AAGAAATTGATAATGAAGAGTCCATTTACTATTGGGCATACAAGAACAGT
ATTCCAGTTTTCAGCCCAGCTATAACTGACGGTTCAATTGGTGATAATAT
TTATTTCCATAGTTTCCGTAAACCTGGATTAAGAATTGACATTGCAGAGG
ATATTACCTACATTAATAATTTGTCAGTTAAATCTAAAAATACTGGGCAG
GTCATTATTGGTGGCGGTTTGATCAAACATCATATCTGTAATGCCAATTT
GATGCGTAATGGTGCAGATTACAGTGTTTATGTTAATACAGCGGGAGAAT
TTGATGGCTCAGATGCAGGGGCCGCACCAGATGAGGCTGTTTCTTGGGGA
AAAATTAAAATGACTGCAAAACCAGTCAAAGTTGTCGCAGACGCTACTCT
TGTATTTCCATTGATTGTAGCGGAGACATTTGCTAAATATCACTATGCAA
AGAAAGAACAACAGATGTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTC
TGTNCAAGGCTTGAATCGTACTGGTAATCTGATTGTTCCCAATGATAATT
ACTGCACTTTTGAAAATTGGTTTCAACCTATATTGGATCAAATGCTAAAA
GAGCAAAATGAGAATGGTACTAACTGGACACCGTCAAAAATGATTGCACG
AATGGGTAAAGAAATTGATAATGAAGAGTCCATTTACTATTGGGCATACA
AGAACAGTATTCCAGTTTTCAGCCCAGCTATAACTGACGGTTCAATTGGT
GATAATATTTATTTCCATAGTTTCCGTAAACCTGGATTAAGAATTGACAT
TGCAGAGGACATTACATACATTAATAATTTGTCTGTCAAATCTAAAAATA
CTGGGCAGGTCATCATTGGTGGAGGTTTGATCAAACATCATATCTGTAAT
GCCAATTTGATGCGTAATGGTGCAGATTACAGTGTTTATGTTAATACAGC
GGGAGAATTTGATGGCTCAGATGCAGGTGCTGCACCAGACGAGGCTGTCT
CTTGGGGAAAAATTAAAATGACTGCAAAGCCAGTCAAAGTTGTCGCAGAC
GCTACTCTTGTATTTCCATTGATTGTAGCGGAGACATTTGCTAAATATCA
TTATGCAAAGAAAGAACAACAGATGTAAAGCTGGTCGGCTTTTCGATTTT
GTTCTTTCTGTAATATAGGCAGATCCTTGATATAGCGAATGCATAATAGG
TATATGATTTCAAGGGCATTTACAAATTTTTTTTTTATTTTGATATCATT
TAGGCTATGCCATATCTTTGAAACATGAACATTTCTCTTTTGGATATGTG
TTTTTCTTTCATGTTGTTTTTATGTTTTTGATATTAAATTAATACACACA
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012113-exon-sc0000137-1575043694:101553..103704 | TCONS_00012113-exon-sc0000137-1575043694:101553..103704 | Clytia hemisphaerica | exon |
| TCONS_00012113-exon-sc0000137-1510915933:101553..103704 | TCONS_00012113-exon-sc0000137-1510915933:101553..103704 | Clytia hemisphaerica | exon |
| TCONS_00012113-exon-sc0000137-1491911889:101553..103704 | TCONS_00012113-exon-sc0000137-1491911889:101553..103704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:101553..103704 - |
Blast
BLAST of TCONS_00012113 vs. Swiss-Prot (Human)
Match: DHYS (Deoxyhypusine synthase OS=Homo sapiens GN=DHPS PE=1 SV=1) HSP 1 Score: 480.715 bits (1236), Expect = 7.698e-164 Identity = 217/352 (61.65%), Postives = 284/352 (80.68%), Query Frame = 2
Query: 191 QNQIPDVSKDAVLVQSVKMPDDAPQVKGYDFNEGLNYEKLMKSYYSTGFQALHLGQAFEEINNMLKCRDLPL-ENVSQHTD--EKLRPKTNCTIFLGYTSNMASAGIRDVIRFLVQHKLVDVVVTTAGGIEEDFIKCMAPTYLGDFKLKGATLRKQGLNRTGNLIVPNDNYCTFENWFQPILDQMLKEQNENGTNWTPSKMIARMGKEIDNEESIYYWAYKNSIPVFSPAITDGSIGDNIYFHSFRKPGLRIDIAEDITYINNLSVKSKNTGQVIIGGGLIKHHICNANLMRNGADYSVYVNTAGEFDGSDAGAAPDEAVSWGKIKMTAKPVKVVADATLVFPLIVAETFAK 1237
+ + P + AVL S +P ++ QV+GYDFN G+NY L++++ +TGFQA + G+A +++N M++ + PL ++ QH D + RP T+CTIFLGYTSN+ S+GIR+ IR+LVQH +VDV+VTTAGG+EED IKC+APTYLG+F L+G LR+ G+NR GNL+VPN+NYC FE+W PILDQM+ EQN G WTPSKMIAR+GKEI+N ES+YYWA KN IPVFSPA+TDGS+GD I+FHS++ PGL +DI ED+ IN ++ +K TG +I+GGG++KHHI NANLMRNGADY+VY+NTA EFDGSD+GA PDEAVSWGKI++ A+PVKV ADA+LVFPL+VAETFA+
Sbjct: 6 EREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQ 357 HSP 2 Score: 311.612 bits (797), Expect = 1.856e-98 Identity = 138/200 (69.00%), Postives = 169/200 (84.50%), Query Frame = 3
Query: 1296 LSVQGLNRTGNLIVPNDNYCTFENWFQPILDQMLKEQNENGTNWTPSKMIARMGKEIDNEESIYYWAYKNSIPVFSPAITDGSIGDNIYFHSFRKPGLRIDIAEDITYINNLSVKSKNTGQVIIGGGLIKHHICNANLMRNGADYSVYVNTAGEFDGSDAGAAPDEAVSWGKIKMTAKPVKVVADATLVFPLIVAETFAK 1895
L G+NR GNL+VPN+NYC FE+W PILDQM+ EQN G WTPSKMIAR+GKEI+N ES+YYWA KN IPVFSPA+TDGS+GD I+FHS++ PGL +DI ED+ IN ++ +K TG +I+GGG++KHHI NANLMRNGADY+VY+NTA EFDGSD+GA PDEAVSWGKI++ A+PVKV ADA+LVFPL+VAETFA+
Sbjct: 158 LRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQ 357
The following BLAST results are available for this feature:
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