TCONS_00012112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012112
Unique NameTCONS_00012112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012112 ID=TCONS_00012112|Name=TCONS_00012112|organism=Clytia hemisphaerica|type=transcript|length=1412bp
tttttattttcattcacagataatattatttcaatttaacaaaaaagtta
aaacctAACAATCAATTGAAGAATGTCAACGGCAGCATTGGATTGGTCAG
TTTGTGGGAGCGATGATGAATGGCAACAAGATTTAAAATTACCTGAACCT
ACTGATCCTAAGAAAGGCGTTATGTTAGATATCACCAATGTCCCTGTCAA
GATCGCTCTCATGTTTCGAGAAATCGAGGAAAAAAAAATCCTTCCAATCA
CATGCACATGTCCACGTGTTGGTTCGCTCAAAGACTCGAGCACCATCTCA
ACGCCAGTACAACCAACCTCTAAAGAAGTCGAGTCAGCTGACAGTGGTAC
AGAAAATGAACAGAAGATAGCTGACACAAGcaAAGCATACGAGGCATTTG
ACTTTGATGACGAGAGTGACCCACGTGGTATCGCATCAGCAAAGCGTAAA
ACTCCTGCAAGTGGTGTGAAACGAGTAAAGAAAGAGAAAGCCAGTCTATC
TAACGTAGTCAATGACATTAGACGTCAAAAACTGTTAGATGATATGGAAG
CGGCGAACGGAAGCGTTAGCGGAGTAAACAAACCTGAAATTGTCACCGAA
TCTGCTAAAAATGTTCCGACAACTACCACTACTATTTCAGAGTCACCAAC
AACAAAACCTTCATCGTAGTCTTTTCAACTCTCGTAATCAAGTTTATCTG
TAGAATGGTGGGCCTCCGAGGGTGCATACCGGTAATTTTTTCACGAAATA
TTGGCATACCGGCCAAAAAATCTGAATACCGTTCAAATACGTTCTGACGA
ATACCAGAAAACCGGAAATTACTGAAATATCGGTCAATACAGGATTCTGG
GAAGTTCCCTTCCATGCAGAGTCGGATGTGCtgattttcaaacaattttg
ccCAAATATGGCAAGGTACCTTGATACATTGATGTTCCAATTGGATTCTC
AGGATCATAAAATCAAAGTCAGCTAAGAATGGAGTCGTTTTGTTTCTCTT
CTTCAGTGTTCAGTTCGCCATTTTACATTTGTCCCAAGGGGATTAGTTCA
AAAGAATGTGGAATAATTAAAATGAGAAAACATTTAGCTAGATTTGTCTT
TGCCAAGGACATTGAAAAATGACAACGGTTTTCTGAAGGAATTGGGAGTC
TTTGCGAAAAGGAGCGGGTGGCTATTATAAAGAAAGTAATAGATTTATGA
AAGGAGGGGTAGAACGCTTtcaactcaatttatgataacctgaatttctt
caaaaaaaatttacgcTAAAACTACACTGACTAAGCTTCCTCAATTCTCT
TGTTAGATAAGCTACATGAtatctttttaaaagtttttcaatttcatgta
CCATATAGTTTTTTAATTATTGTAATTATTCCGTCATAGATTGTACATAA
TTTGAACACGAC
Run BLAST on NCBI

protein sequence of TCONS_00012112-protein

>TCONS_00012112-protein ID=TCONS_00012112-protein|Name=TCONS_00012112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MSTAALDWSVCGSDDEWQQDLKLPEPTDPKKGVMLDITNVPVKIALMFRE
IEEKKILPITCTCPRVGSLKDSSTISTPVQPTSKEVESADSGTENEQKIA
DTSKAYEAFDFDDESDPRGIASAKRKTPASGVKRVKKEKASLSNVVNDIR
RQKLLDDMEAANGSVSGVNKPEIVTESAKNVPTTTTTISESPTTKPSS
Run BLAST on NCBI

transcript from alignment at sc0000137:97349..100566-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012112 ID=TCONS_00012112|Name=TCONS_00012112|organism=Clytia hemisphaerica|type=transcript|length=3218bp|location=Sequence derived from alignment at sc0000137:97349..100566- (Clytia hemisphaerica)
TTTTTATTTTCATTCACAGATAATATTATTTCAATTTAACAAAAAAGTTA
AAACCTAACAATCAATTGAAGAATGTCAACGGCAGCATTGGATTGGTCAG
TTTGTGGGAGCGATGATGAATGGCAACAAGATTTAAAATTACCTGAACCT
ACTGATCCTAAGAAAGGTGTGTATCCCTTTGTAAGAAGTTATTCAAAACT
ATTCATTCATTGCTTAGTAATCTTCGTTGTTCTATGTTTTGTATAATAAA
TCCCAATAGTGAACATTTGTCAAAACCTTCTTTGTTTCTTAAGTTTTCAA
TACATTTCAAAATACAAATTAAAGGTTTTGTTTTTGAATAAGAATGATAT
CGTTTGCTTACTCATCAATTTTAATTCAATTTAAAGCTTTTTTACATTGG
ATTGACACGGATGTGGAGCAAGATTGGTCAGAAAGAGGAAAAGAAAAACA
TTTTTTGGTTATATCAGCATAATAAATAACAACAGCAAACCACTGTCCTG
ATATGAAATATGTGTCTGATATGATTATGAAACGGAAACACTTATGTAAA
AATAAAGCCTTTAAATAAAAATAGTGATGACTATTCCCCTCATGATATCA
TATATTTGTATTTTCATTCTGCAAACCTTCAGGCGTTATGTTAGATATCA
CCAATGTCCCTGTCAAGATCGCTCTCATGTTTCGAGAAATCGAGGAAAAA
AAAATCCTTCCAATCACATGCACATGTCCACGTGTTGGTTCGCTCAAAGA
CTCGAGCACCATCTCAACGCCAGTACAACCAACCTCTAAAGAAGTCGAGT
CAGCTGACAGTGGTACAGAAAATGAACAGAAGATAGCTGACACAAGGTCC
CATTTGTATTTATTTACAGCAGACTCTCTCTAATTCGAATCTTTTTGTAA
TTCGATCTAAAGTATTTGCTCCCTCAGCGGAAGTTATTTAAATTATTCTC
TTTCATTCGAATCTTTCTCTAATGCAAATAAAATCTTTGGTCTGGCTTGA
AGATTGAATCAGTCAGAGGAAGTCAAATGTAGTTTCATTAAAGGAAGAAA
TTTCGGCGGAAAGAAAATTTGGAGGATTTAGCCAAAATCCGCCAAATTAA
GTTCCCGTCAAAATTTATTTTTTCCTCCATCCGCCAAATTAAATTCCCGC
CAAATTTAATTCATTTTTTGCGTTCCCCAAATTGGTGCTTTTTCAAGCCC
AAAAACAGGTTTCTTTGCTCATTTAATAACGCTTTTGGCCAAAAATATCC
TGCCACGGCCAAATTAAATTTCCACCAAAATTTCTTCCTTTTAAGGTATA
ATAGGACAAACAATTTTCTACCTTCGATCAGCTTCGATACAAAGTTTTTG
CTTATGATCATTTGTTTGGGGGGGGGNCAAAGAAAACAGTAGTTGTTTCT
TGTGAAGTTACTGTTTCGTTTTTATTTTCATAGCAAAGCATACGAGGCAT
TTGACTTTGATGACGAGAGTGACCCACGTGGTATCGCATCAGCAAAGCGT
AAAACTCCTGCAAGTGGTGGTATGTCATTTTTTCCTTGAACGAATTTTCA
AATAACAATTTTTTCTGTTGCAGATCATATTCTCCTATCCATATTGTTTA
GTTAAGGAGTAAAATATATATCTTCTCAGGGTATTTTCCAAGCACTTTTT
TACCACCGTTATTCGGTGTCAAAAACTCAATTTTAAATTGACTTTTCAAA
CTCAATTTTGTGTAAAATATAAATGGAGATTAAATAATGAAAAGTAGAAA
AATGATGCTATAAAACTTGAAGGAAAATGAACTCCATTTGTTAATAATAT
GTCAAACAAGTATCAAAGTTGTTTTTTCAATAAGTTTGAAATTTATTATT
AAACAAATTTAACTTTTGAAATGCATGAAAACACTTATTTAGAGATTTTG
GAAGGCAAAAGTTCTCTTCATAACCCAACCATGGTGGTTGATATTTATTC
AAAACCACTGGTGGTAATAAAAAGTGCTTAGAAAACACCCTGCCTTATAA
AACAACTCATCCAGAAAAGATAAATTATTAAAACACTTTTAGATGTATAT
AAAATCGTCTCGTTTACAAAGTTACGTTGCTAAGGCACTCGAACATCGTT
GTCGGCTAATTGTCCTTGTGAAAGTTTCTCTTTTGTACTAAATTTATAGT
GGATTTGCGAATGCATGGAAATAATCATTCCATATTTGTAAACGAGGCCC
GCAATAATCCCATCATCTTAGAGAGGAATGAGTTTCAGCTTTATTTTATG
ACCCTTTTTCTTCTTCTTACAGTGAAACGAGTAAAGAAAGAGAAAGCCAG
TCTATCTAACGTAGTCAATGACATTAGACGTCAAAAACTGTTAGATGATA
TGGAAGCGGCGAACGGAAGCGTTAGCGGAGTAAACAAACCTGAAATTGTC
ACCGAATCTGCTAAAAATGTTCCGACAACTACCACTACTATTTCAGAGTC
ACCAACAACAAAACCTTCATCGTAGTCTTTTCAACTCTCGTAATCAAGTT
TATCTGTAGAATGGTGGGCCTCCGAGGGTGCATACCGGTAATTTTTTCAC
GAAATATTGGCATACCGGCCAAAAAATCTGAATACCGTTCAAATACGTTC
TGACGAATACCAGAAAACCGGAAATTACTGAAATATCGGTCAATACAGGA
TTCTGGGAAGTTCCCTTCCATGCAGAGTCGGATGTGCTGATTTTCAAACA
ATTTTGCCCAAATATGGCAAGGTACCTTGATACATTGATGTTCCAATTGG
ATTCTCAGGATCATAAAATCAAAGTCAGCTAAGAATGGAGTCGTTTTGTT
TCTCTTCTTCAGTGTTCAGTTCGCCATTTTACATTTGTCCCAAGGGGATT
AGTTCAAAAGAATGTGGAATAATTAAAATGAGAAAACATTTAGCTAGATT
TGTCTTTGCCAAGGACATTGAAAAATGACAACGGTTTTCTGAAGGAATTG
GGAGTCTTTGCGAAAAGGAGCGGGTGGCTATTATAAAGAAAGTAATAGAT
TTATGAAAGGAGGGGTAGAACGCTTTCAACTCAATTTATGATAACCTGAA
TTTCTTCAAAAAAAATTTACGCTAAAACTACACTGACTAAGCTTCCTCAA
TTCTCTTGTTAGATAAGCTACATGATATCTTTTTAAAAGTTTTTCAATTT
CATGTACCATATAGTTTTTTAATTATTGTAATTATTCCGTCATAGATTGT
ACATAATTTGAACACGAC

Coding sequence (CDS) from alignment at sc0000137:97349..100566-

>TCONS_00012112 ID=TCONS_00012112|Name=TCONS_00012112|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0000137:97349..100566- (Clytia hemisphaerica)
TGAAACGAGTAAAGAAAGAGAAAGCCAGTCTATCTAACGTAGTCAATGAC
ATTAGACGTCAAAAACTGTTAGATGATATGGAAGCGGCGAACGGAAGCGT
TAGCGGAGTAAACAAACCTGAAATTGTCACCGAATCTGCTAAAAATGTTC
CGACAACTACCACTACTATTTCAGAGTCACCAACAACAAAACCTTCATCG
TAGCAAAGCATACGAGGCATTTGACTTTGATGACGAGAGTGACCCACGTG
GTATCGCATCAGCAAAGCGTAAAACTCCTGCAAGTGGTGGCGTTATGTTA
GATATCACCAATGTCCCTGTCAAGATCGCTCTCATGTTTCGAGAAATCGA
GGAAAAAAAAATCCTTCCAATCACATGCACATGTCCACGTGTTGGTTCGC
TCAAAGACTCGAGCACCATCTCAACGCCAGTACAACCAACCTCTAAAGAA
GTCGAGTCAGCTGACAGTGGTACAGAAAATGAACAGAAGATAGCTGACAC
AAGATGTCAACGGCAGCATTGGATTGGTCAGTTTGTGGGAGCGATGATGA
ATGGCAACAAGATTTAAAATTACCTGAACCTACTGATCCTAAGAAAGTGA
AACGAGTAAAGAAAGAGAAAGCCAGTCTATCTAACGTAGTCAATGACATT
AGACGTCAAAAACTGTTAGATGATATGGAAGCGGCGAACGGAAGCGTTAG
CGGAGTAAACAAACCTGAAATTGTCACCGAATCTGCTAAAAATGTTCCGA
CAACTACCACTACTATTTCAGAGTCACCAACAACAAAACCTTCATCGTAG
CAAAGCATACGAGGCATTTGACTTTGATGACGAGAGTGACCCACGTGGTA
TCGCATCAGCAAAGCGTAAAACTCCTGCAAGTGGTGGCGTTATGTTAGAT
ATCACCAATGTCCCTGTCAAGATCGCTCTCATGTTTCGAGAAATCGAGGA
AAAAAAAATCCTTCCAATCACATGCACATGTCCACGTGTTGGTTCGCTCA
AAGACTCGAGCACCATCTCAACGCCAGTACAACCAACCTCTAAAGAAGTC
GAGTCAGCTGACAGTGGTACAGAAAATGAACAGAAGATAGCTGACACAAG
ATGTCAACGGCAGCATTGGATTGGTCAGTTTGTGGGAGCGATGATGAATG
GCAACAAGATTTAAAATTACCTGAACCTACTGATCCTAAGAAAGTGAAAC
GAGTAAAGAAAGAGAAAGCCAGTCTATCTAACGTAGTCAATGACATTAGA
CGTCAAAAACTGTTAGATGATATGGAAGCGGCGAACGGAAGCGTTAGCGG
AGTAAACAAACCTGAAATTGTCACCGAATCTGCTAAAAATGTTCCGACAA
CTACCACTACTATTTCAGAGTCACCAACAACAAAACCTTCATCGTAGCAA
AGCATACGAGGCATTTGACTTTGATGACGAGAGTGACCCACGTGGTATCG
CATCAGCAAAGCGTAAAACTCCTGCAAGTGGTGGCGTTATGTTAGATATC
ACCAATGTCCCTGTCAAGATCGCTCTCATGTTTCGAGAAATCGAGGAAAA
AAAAATCCTTCCAATCACATGCACATGTCCACGTGTTGGTTCGCTCAAAG
ACTCGAGCACCATCTCAACGCCAGTACAACCAACCTCTAAAGAAGTCGAG
TCAGCTGACAGTGGTACAGAAAATGAACAGAAGATAGCTGACACAAGATG
TCAACGGCAGCATTGGATTGGTCAGTTTGTGGGAGCGATGATGAATGGCA
ACAAGATTTAAAATTACCTGAACCTACTGATCCTAAGAAAGTGAAACGAG
TAAAGAAAGAGAAAGCCAGTCTATCTAACGTAGTCAATGACATTAGACGT
CAAAAACTGTTAGATGATATGGAAGCGGCGAACGGAAGCGTTAGCGGAGT
AAACAAACCTGAAATTGTCACCGAATCTGCTAAAAATGTTCCGACAACTA
CCACTACTATTTCAGAGTCACCAACAACAAAACCTTCATCGTAGCAAAGC
ATACGAGGCATTTGACTTTGATGACGAGAGTGACCCACGTGGTATCGCAT
CAGCAAAGCGTAAAACTCCTGCAAGTGGTGGCGTTATGTTAGATATCACC
AATGTCCCTGTCAAGATCGCTCTCATGTTTCGAGAAATCGAGGAAAAAAA
AATCCTTCCAATCACATGCACATGTCCACGTGTTGGTTCGCTCAAAGACT
CGAGCACCATCTCAACGCCAGTACAACCAACCTCTAAAGAAGTCGAGTCA
GCTGACAGTGGTACAGAAAATGAACAGAAGATAGCTGACACAAGATGTCA
ACGGCAGCATTGGATTGGTCAGTTTGTGGGAGCGATGATGAATGGCAACA
AGATTTAAAATTACCTGAACCTACTGATCCTAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006811XLOC_006811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012112-exon-sc0000137-1575043694:100401..100566TCONS_00012112-exon-sc0000137-1575043694:100401..100566Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1575043694:99721..99934TCONS_00012112-exon-sc0000137-1575043694:99721..99934Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1575043694:99048..99133TCONS_00012112-exon-sc0000137-1575043694:99048..99133Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1575043694:97349..98294TCONS_00012112-exon-sc0000137-1575043694:97349..98294Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1510915933:100401..100566TCONS_00012112-exon-sc0000137-1510915933:100401..100566Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1510915933:99721..99934TCONS_00012112-exon-sc0000137-1510915933:99721..99934Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1510915933:99048..99133TCONS_00012112-exon-sc0000137-1510915933:99048..99133Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1510915933:97349..98294TCONS_00012112-exon-sc0000137-1510915933:97349..98294Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1491911889:100401..100566TCONS_00012112-exon-sc0000137-1491911889:100401..100566Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1491911889:99721..99934TCONS_00012112-exon-sc0000137-1491911889:99721..99934Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1491911889:99048..99133TCONS_00012112-exon-sc0000137-1491911889:99048..99133Clytia hemisphaericaexon
TCONS_00012112-exon-sc0000137-1491911889:97349..98294TCONS_00012112-exon-sc0000137-1491911889:97349..98294Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012112-proteinTCONS_00012112-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:97349..100566 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.5799	49.9534	37.5318	28.65	20.442	16.4049	27.9057	30.9525	22.5901	21.3632	18.7935	15.6538	15.1613	15.0119	13.7652	15.1496	20.3899	20.7628	8.49575	12.1379	16.5379	15.7716	52.7496	45.4055	16.5599	17.5486	11.9697	10.4007	26.4481	29.6477
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028213PA1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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