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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012096 ID=TCONS_00012096|Name=TCONS_00012096|organism=Clytia hemisphaerica|type=transcript|length=2838bpRun BLAST on NCBI protein sequence of TCONS_00012096-protein >TCONS_00012096-protein ID=TCONS_00012096-protein|Name=TCONS_00012096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp MISKALQYVLCYETLFGKGLHQNSKYEKFISTHEDKLKATLDDLQKEEPGRun BLAST on NCBI transcript from alignment at sc0000137:287015..315578+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012096 ID=TCONS_00012096|Name=TCONS_00012096|organism=Clytia hemisphaerica|type=transcript|length=28564bp|location=Sequence derived from alignment at sc0000137:287015..315578+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000137:287015..315578+ >TCONS_00012096 ID=TCONS_00012096|Name=TCONS_00012096|organism=Clytia hemisphaerica|type=CDS|length=14460bp|location=Sequence derived from alignment at sc0000137:287015..315578+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012096 vs. Swiss-Prot (Human)
Match: NSUN5 (Probable 28S rRNA (cytosine-C(5))-methyltransferase OS=Homo sapiens GN=NSUN5 PE=1 SV=2) HSP 1 Score: 290.041 bits (741), Expect = 9.908e-88 Identity = 147/340 (43.24%), Postives = 206/340 (60.59%), Query Frame = 2
Query: 1400 YEKFISTHEDKLKATLDDLQ------KEEPGLFTDTKKNQVV-LPRYVRVNVLKCSMDVAINRFQTDGFNL----VSGKEINEISGDEFVLDKDIPNVLVFPPNTDLHQYSLYKEGKLFLQDKASCLSAYVLNPPERSLVIDGCAAPGNKTTHLACILNNNGSVYSFDLDKKRLRTMEMLVQKAGATCVTPKHQDFLKVRHDDKLFSKVEYILLDPSCSGSGIVGRMDNYVDDDEENATNEVNEKRLKALSGFQTAALSHALTFPNVQKVLYSTCSIHKQENEDVIEKAFKRFEEQFDLCHVMPSWKSRGQGEWELAYKCIRAVPEKDFTNGFFVAMFER 2386
++ + H+ +LKA L L+ + E L ++ LPR+VRVN LK D ++ F+ GF+ S ++ + G F+LD +P +LVFP TDLH++ LY+ G L LQD+ASCL A +L+PP S VID CAAPGNKT+HLA +L N G +++FDLD KRL +M L+ +AG +C +DFL V D + +V YILLDPSCSGSG+ R EE + RL AL+GFQ AL HALTFP++Q+++YSTCS+ ++ENEDV+ A ++ F L +P+W RG + A C+RA PE ++GFFVA+ ER
Sbjct: 91 WKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR------QLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 424 The following BLAST results are available for this feature:
BLAST of TCONS_00012096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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